CsaV3_6G029630.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G029630.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 16918530 .. 16919420 (+)
Sequence length558
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTTTTTTATATAAATATAGATGCCGATAATAATTAAGTTGTTCACATGAAAATTAAACTTAGGTGAAATAAAAGTATGAAAATGAAGAAAATAATAATAATATTATTTAGAAAATGTTGAAAGGTAAAGGAATGCACAAGTGATGGTATTACAATTATATTATAAAGAATGAGAAAGTTGGAAATTGGAAGAAATTAGACAGATAAGGATGTTGAATTCACCAAAGTCCAGAAAGCGAAAATTGAAGACGCCGCCACAGCCGCCGAGGGCCACCAGAGCCAAGACGATTGAAGTGGAAGAACCCGATGGTTTCGGATATATGGTCGAACAACTCCTCTTCGGCAGCGGATCATCGGGTGGATCCATCACGGACCACCCTTCGTCTTCCTCCAATACCCCGCGGGATGAATATGTGCCTATGGGGATACTCTCACCAACCCCCATTTCTCTCCCGCCTGTTTCTCCAAACGATTTCACATCGACGCCGCTGGCACCCTCGACGTCAGAAGGAGAATTGAGTATTCACGATTACGGCGGCTGGGAAGAGGCGGCAACGGGAATGGTAGCTTACCCTTTTCTTGAATCCTCTTTTATTGATCCCAATAACAATAATAATGGAGGATTATCAAGTTCAAATTCAAGTTCAAGTTCAAACTCGAATTTAGAACCATTCGTATATCCTGAATCAATGTTGTATCCTCTTCCTCCCATTTTCAAGACTCCTCTACCCCCTCTTTACTATAGACCCAAATTTTGTAAACCCTAACTAATTCCATCTTTTCTTCAATTACTACTAATTAATTTTCTCTTAATTACTCAATAATTCTTGCACATTCTGTACCAATTCAAACATTCTTGGACTTGGTGTATATATCCAAAAATTGCTC

mRNA sequence

ATGTTGAATTCACCAAAGTCCAGAAAGCGAAAATTGAAGACGCCGCCACAGCCGCCGAGGGCCACCAGAGCCAAGACGATTGAAGTGGAAGAACCCGATGGTTTCGGATATATGGTCGAACAACTCCTCTTCGGCAGCGGATCATCGGGTGGATCCATCACGGACCACCCTTCGTCTTCCTCCAATACCCCGCGGGATGAATATGTGCCTATGGGGATACTCTCACCAACCCCCATTTCTCTCCCGCCTGTTTCTCCAAACGATTTCACATCGACGCCGCTGGCACCCTCGACGTCAGAAGGAGAATTGAGTATTCACGATTACGGCGGCTGGGAAGAGGCGGCAACGGGAATGGTAGCTTACCCTTTTCTTGAATCCTCTTTTATTGATCCCAATAACAATAATAATGGAGGATTATCAAGTTCAAATTCAAGTTCAAGTTCAAACTCGAATTTAGAACCATTCGTATATCCTGAATCAATGTTGTATCCTCTTCCTCCCATTTTCAAGACTCCTCTACCCCCTCTTTACTATAGACCCAAATTTTGTAAACCCTAA

Coding sequence (CDS)

ATGTTGAATTCACCAAAGTCCAGAAAGCGAAAATTGAAGACGCCGCCACAGCCGCCGAGGGCCACCAGAGCCAAGACGATTGAAGTGGAAGAACCCGATGGTTTCGGATATATGGTCGAACAACTCCTCTTCGGCAGCGGATCATCGGGTGGATCCATCACGGACCACCCTTCGTCTTCCTCCAATACCCCGCGGGATGAATATGTGCCTATGGGGATACTCTCACCAACCCCCATTTCTCTCCCGCCTGTTTCTCCAAACGATTTCACATCGACGCCGCTGGCACCCTCGACGTCAGAAGGAGAATTGAGTATTCACGATTACGGCGGCTGGGAAGAGGCGGCAACGGGAATGGTAGCTTACCCTTTTCTTGAATCCTCTTTTATTGATCCCAATAACAATAATAATGGAGGATTATCAAGTTCAAATTCAAGTTCAAGTTCAAACTCGAATTTAGAACCATTCGTATATCCTGAATCAATGTTGTATCCTCTTCCTCCCATTTTCAAGACTCCTCTACCCCCTCTTTACTATAGACCCAAATTTTGTAAACCCTAA

Protein sequence

MLNSPKSRKRKLKTPPQPPRATRAKTIEVEEPDGFGYMVEQLLFGSGSSGGSITDHPSSSSNTPRDEYVPMGILSPTPISLPPVSPNDFTSTPLAPSTSEGELSIHDYGGWEEAATGMVAYPFLESSFIDPNNNNNGGLSSSNSSSSSNSNLEPFVYPESMLYPLPPIFKTPLPPLYYRPKFCKP
Homology
[Close]
BLAST of CsaV3_6G029630.1 vs. NCBI nr
Match: KGN47474.1 (hypothetical protein Csa_6G338060 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 8.6e-60
Identity = 131/185 (70.81%), Postives = 132/185 (71.35%), Query Frame = 0 

Query: 1   MLNSPKSRKRKLKTPPQPPRATRAKTIEVEEPDGFGYMVEQLLFGSGSSGGSITDHPSSS 60
           MLNSPKSRKRKLKTPPQPPRATRAKTIEVEEPDGFGYMVEQLLFGSGSSGGSITDHPSSS
Sbjct: 1   MLNSPKSRKRKLKTPPQPPRATRAKTIEVEEPDGFGYMVEQLLFGSGSSGGSITDHPSSS 60

Query: 61  SNTPRDEYVPMGILSPTPISLPPVSPNDFTSTPLAPSTSEGELSIHDYGGWEEAATGMVA 120
           SNTPRDEYVPMGILSPTPISLPPVSPNDFTSTPLAPSTSEGELSIHDYGGWEEAATGM  
Sbjct: 61  SNTPRDEYVPMGILSPTPISLPPVSPNDFTSTPLAPSTSEGELSIHDYGGWEEAATGMT- 120

Query: 121 YPFLESSFIDPXXXXXXXXXXXXXXXXXXXNLEPFVYPESMLYPLPPIFKTXXXXXYYRP 180
                                                      PLPP+        YYRP
Sbjct: 121 -------------------------------------------PLPPL--------YYRP 133

Query: 181 KFCKP 186
           KFCKP
Sbjct: 181 KFCKP 133

[Close]
BLAST of CsaV3_6G029630.1 vs. TrEMBL
Match: tr|A0A0A0KF90|A0A0A0KF90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338060 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 5.7e-60
Identity = 131/185 (70.81%), Postives = 132/185 (71.35%), Query Frame = 0 

Query: 1   MLNSPKSRKRKLKTPPQPPRATRAKTIEVEEPDGFGYMVEQLLFGSGSSGGSITDHPSSS 60
           MLNSPKSRKRKLKTPPQPPRATRAKTIEVEEPDGFGYMVEQLLFGSGSSGGSITDHPSSS
Sbjct: 1   MLNSPKSRKRKLKTPPQPPRATRAKTIEVEEPDGFGYMVEQLLFGSGSSGGSITDHPSSS 60

Query: 61  SNTPRDEYVPMGILSPTPISLPPVSPNDFTSTPLAPSTSEGELSIHDYGGWEEAATGMVA 120
           SNTPRDEYVPMGILSPTPISLPPVSPNDFTSTPLAPSTSEGELSIHDYGGWEEAATGM  
Sbjct: 61  SNTPRDEYVPMGILSPTPISLPPVSPNDFTSTPLAPSTSEGELSIHDYGGWEEAATGMT- 120

Query: 121 YPFLESSFIDPXXXXXXXXXXXXXXXXXXXNLEPFVYPESMLYPLPPIFKTXXXXXYYRP 180
                                                      PLPP+        YYRP
Sbjct: 121 -------------------------------------------PLPPL--------YYRP 133

Query: 181 KFCKP 186
           KFCKP
Sbjct: 181 KFCKP 133

The following BLAST results are available for this feature:
BLAST of CsaV3_6G029630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47474.18.6e-6070.81hypothetical protein Csa_6G338060 [Cucumis sativus][more]
BLAST of CsaV3_6G029630.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G029630.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G029630.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KF90|A0A0A0KF90_CUCSA5.7e-6070.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G029630CsaV3_6G029630gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G029630.1.exon1CsaV3_6G029630.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G029630.1.cds1CsaV3_6G029630.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G029630.1CsaV3_6G029630.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..99