CsaV3_5G013900.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G013900.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 10691903 .. 10692203 (-)
Sequence length195
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCAGGCCCAACTTCACTGTCTGCCTCTGTACCAATTTCCAAGGTATCACCTCCAATAAACAAATTAAAAATTAATTATAACATCCATATATAGAACCAATGTCCTTATGATATTGGAGAGGATCCAAATTCTCTCTCAAGATGTAAAGGCCACTGTGCTATGCCGGATCAAAGCACTACCGGCTATATCTTCTAATTCCTTCATTTCTAATGATCGCCGTGTTCCGCATGCTGGATCTTCTACTATTCTATTCTATGTTCTTCCCGAAAGCGTGTCAATCCTTCAGACAATATGA

mRNA sequence

ATGGCATCAGGCCCAACTTCACTGTCTGCCTCTGTACCAATTTCCAAGGCCACTGTGCTATGCCGGATCAAAGCACTACCGGCTATATCTTCTAATTCCTTCATTTCTAATGATCGCCGTGTTCCGCATGCTGGATCTTCTACTATTCTATTCTATGTTCTTCCCGAAAGCGTGTCAATCCTTCAGACAATATGA

Coding sequence (CDS)

ATGGCATCAGGCCCAACTTCACTGTCTGCCTCTGTACCAATTTCCAAGGCCACTGTGCTATGCCGGATCAAAGCACTACCGGCTATATCTTCTAATTCCTTCATTTCTAATGATCGCCGTGTTCCGCATGCTGGATCTTCTACTATTCTATTCTATGTTCTTCCCGAAAGCGTGTCAATCCTTCAGACAATATGA

Protein sequence

MASGPTSLSASVPISKATVLCRIKALPAISSNSFISNDRRVPHAGSSTILFYVLPESVSILQTI
Homology
[Close]
BLAST of CsaV3_5G013900.1 vs. NCBI nr
Match: KGN49558.1 (hypothetical protein Csa_5G002040 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MASGPTSLSASVPISKATVLCRIKALPAISSNSFISNDRRVPHAGSSTILFYVLPESVSI 60
          MASGPTSLSASVPISKATVLCRIKALPAISSNSFISNDRRVPHAGSSTILFYVLPESVSI
Sbjct: 1  MASGPTSLSASVPISKATVLCRIKALPAISSNSFISNDRRVPHAGSSTILFYVLPESVSI 60

Query: 61 LQTI 65
          LQTI
Sbjct: 61 LQTI 64

[Close]
BLAST of CsaV3_5G013900.1 vs. TrEMBL
Match: tr|A0A0A0KJ54|A0A0A0KJ54_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G002040 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.9e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MASGPTSLSASVPISKATVLCRIKALPAISSNSFISNDRRVPHAGSSTILFYVLPESVSI 60
          MASGPTSLSASVPISKATVLCRIKALPAISSNSFISNDRRVPHAGSSTILFYVLPESVSI
Sbjct: 1  MASGPTSLSASVPISKATVLCRIKALPAISSNSFISNDRRVPHAGSSTILFYVLPESVSI 60

Query: 61 LQTI 65
          LQTI
Sbjct: 61 LQTI 64

The following BLAST results are available for this feature:
BLAST of CsaV3_5G013900.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49558.11.2e-24100.00hypothetical protein Csa_5G002040 [Cucumis sativus][more]
BLAST of CsaV3_5G013900.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G013900.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G013900.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJ54|A0A0A0KJ54_CUCSA7.9e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G002040 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_5G013900CsaV3_5G013900gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G013900.1.cds2CsaV3_5G013900.1.cds2CDS
CsaV3_5G013900.1.cds1CsaV3_5G013900.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G013900.1.exon2CsaV3_5G013900.1.exon2exon
CsaV3_5G013900.1.exon1CsaV3_5G013900.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_5G013900.1CsaV3_5G013900.1-proteinpolypeptide