CsaV3_4G017570.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G017570.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	N utilization substance protein like
Location	chr4 : 10979476 .. 10991405 (-)
Sequence length	1137

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACGGCTTACGCACCACCAAACAAGTCGGAGGAGCTTCCTTCTTCTTCCACTAGGAAATGGCTCTGCCTCCAAGTCCTCTGTGAGTAACGAGAGCTGATTTTGGGGCATTTCACAATGTCTTTAGCTCCACCCACCTCCCTTTATCCCTATTCTTCCCACTCTCATCCCCTCCCCAAATCCCATTTATCTTCCTTTACTCAACGTTCCCATCCCAACTTCTTTTCCTTATGCTTTCCCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCACTCCCTTAAATACTCAGCTTTCAAAACCGACACTGGACTCGGAGATTCCCATGATGCTGACCAACCTCATAGTTTGAAATTTGCACCTGGAGCTTCTGCCCACAAGACTCGACTCTTCACCGTTGGGGATAAAGTTATCACTACCAGGTTTCTTTTTCCTTTGCCCTTCCACTTCTTCTGTTCTCTATTCTTTACCTACTCCCCTCTTTCCTTTTTCCATTTAAACTCTGCTTTCTAAATCTTGCTCACCATGTAAGGGGAGTTAAGGAATTAGTGGTAAATCTTGGGTAAATTCATGCTAATCATTTTTTAGTTTCTTATTTGAATTTGAATTCCTTTTTAGTTTCATTTTGGGATTTCATTTTCCATATTCTGGAGTCCTCTCTCGTGTACCTTTACAACTTCGATTCATATTAAGTTTTGAAAGTTGATAATTGTATAATTTTCTCCTTTGGGTCCTTTAGGCTACATCAGTTCACCAACAACAATTGACCTCTCTGTTAATTTCTCACGCTTAGCAATTTGAATTGTGAAATAGAGGCGGTAGGATGTGGCATGCTTCATCACTTCATACTAGTTACTCCTTCTAAATACTTGCATCATCTTTACAACTTTCCAGAATGGTGGATGCAGGGTCAGTGAACATTTGCTTTAAATATCAGTTTTGGATATTTCCTTAGTAGTCTAAAATTGGACTATACCAGATGTGGCACCTGGATGAGCACCGAGATAACACGACCACCATCTTATACTGGTCAACAGTAACGAACTTGGTTTTATGTAATTCAACCTATGGTTACTATGTAGAAAAACACTACTGAAACTAAAACCTTGTTCTTCCTGATACTCTTTCACTTGCGAGCTTCGAGTTGCTCCTGAACTCAACAAGCTTAAGAGGTTAAGGGCTGATTGGGGAGAGGAGTTGGGTGGGGTGGAGTTGTTTGGCCGCAGGAGTTATTAAACACATTGTAGATCACCCGATTCATTAGCATCAATTTCATGATTTATTAACTCCTTACATTGTGGGTCCATAACTAAACAACTTTATTTTTCATTCTCTCGTGGGTTATGGCAAATTTAGTGAGTAATTTATATTATTGACACTCTAGACAATTGGATATTAATTGAGACAACTGCTAGAGGCAAGGAAATTGTCATATTGTTGTTTTGCCTAGTTTTTCTTAAAGAAAGGAAAAAGGGAAAAGAAAAAGAAAAGATATAGGCTCCATGATTACTACATCTTTCCAGAAAACATGACTTAACTTAGCATGCTTAGTTTTCATTCTTGCTCATCCTCTCTTTTCTTCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCAGTTCCCATTTCATGCTAGTTCAATTGTTCCCCACATAAAAGATTCCATGCCACGTTTCTGCTGTCAAGCCTCGCTTCGGGCTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGGTTGACAAGAGCGGCAAATTTTGTAGTCCGAGAGCTGCTAGAGAGCTTGCTTTGTAAGATCCACTACTTCCTTTTCACCTTTTTTTTTCTCCAACATATGAATATCTCCTCTCTACCTTTTACGTATTCAAAAAGTTGGCTTACTTGCCAAGATATGGGCTAAGAATTTGTTTAATTTCTAGACTTGTGATAAATTCTAATTCTACTAGATTATTCAATGGCAGGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTTTTTGAGAAAAGGTTAAATGCCCGACGAGGTAATCTATGGTAGAGACATGATACATGGTTTTCTGTTACCCCATATACTATTTGGTGTGTGTGTTTTAATATAAAAAAGATCGTGCTGGGGAAATAGATGTCACTCAAATATAAAATCCTGCTTGCTTTTTTTTCTTTGTTTGTACAATTCAGAATCAGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCGGTTACCGTTGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTACAATTGGTAAACAATTATTTGACCTTCATATAACACACACACACACACATTATTTCTTCTTCTTAATTCACCCATTACTTTATATTAAAAACATGATTGGCTAGAAGAGACAACTATTCATTGAAAAGATGAAAAGTGTAAAAGAGAGACTAATGCTCAAAAGATACAAAATCTCTCAAAGGAGTAAAAAGGAAAAAGAAAAGCAGAAAAATGTTAAGTTTCCACAAACCATAACAAATGATTGATTTACTTAAAAGCTTAACAAAGAACTAATAGATTAACATCAAGCATCGGTATGAACGTTGAGTTGCCCATAGAAGTTGGAGTAGATCTCGAAATACTGCAAGTGTTGCTGACAAATTACGATCTTTAGTTTGGTTAACTTTATTTGACAAAGAAGTTTCTTCTTCTGAGTGTGAACCAATTCTTTGTCAAGATGAGATATCCACGTTATATCAATACTGTATTAGGTTCCATTTTTTTTTTTTTTTTTTTTTGATGAGAAACATATGTATTCATATAACAAAATAGAACAACCTAAGGGCAAGGGACAAAAGGGCCCTCCCCAGAAGAAACTAAAAAATGATGGCGTTCCAATTGCTGAATATCATTGAAAGACTATAATTACAAAAATGTTTGGTGTAATTCATACTCCACCAAGAAGTTGTGTGTTGCAACACCGTCCAAAAAGAATCAAAAGAATTATAGTCATTCTAAAAAATTCTTCTATTCCTTTCTTTCCAAATGTACCACAAAAGGGACCGAGTAGCACATCTCCATAACATGTTTCTTTTCAGGCTATAACCTCTAATGTTGAGCCCTTCAATCAACCAGCTATCAACCTTACTAGGAAGACAAAGCTCCAAATAAAAAATTCTAAACAAAGTGTTCCAAGCTTTCCTAGTAAAAAGACAGTGCAAAAATATGTGGTCCAAGGTTTCCTCTCCTTTGAAGCAAAGGCAACACATCGAGGGGCTAAGCACAGTGTACTGTATTAGGTTCCATAAGAAAGCTCTATATCATGTGAGAAAAGAGCTAAAGATTTGATTTGAGAAGGGCCATCATCAACTTGATTGTGCAAATTGACTCCCACCTTGATTTTTTGAAACGGGGTTTAGAGACCTGTTTTTTGAGCCATCATTCATCAGTAGCGATCTTCATCAAACTTGGCATTTTTCCTTTTAGACGTGCTCCATCATTTTGTCTCCTTGCTGCCTTTGTACTAGGGCTGATTGATGTAGCCTAAGCAACCTCAAAGAGTAATTATCTAAGCACCAAGATTGTTAATCTTTTTATTAGAATGGATAATGTGCTTCATACAAGAGGATAATACTCCTATTTAAGAGTTTTATTACAAGTGATGGGTAAAAATGGAATTAACCTAGAATATTATCTAATTTCCCAACTAACCCCTATTCTTCTTACATCATTCTACCCTTCCAAAAAGAAAACCTGTTCTCGAGTTTTAAGAAGGAAAAAATTATGAAGCAAATAATTAATGAAATAAACTTGTTCAATGGAATATGACCAAACCAACCTCCGATGTTTTATACAAAAATATTATGATAAATTAGATTAAGTTGAGACAAAAAATCCAATATTTCCACCAAAAGAGGAACCTCTCCATTGACCGTAAAGCCAAAAAAGATCTTTTCCTTCATGCTCATTCAAAACCACATTCAATGGACCAATCACTCAAAGTCTAGAACACCACATTCCAAAGAGAATCGTTCAAGAATCATGTCTTCTCTATCATGCGCTTCAAGTTCTTCAACGATTCGATGATCCATTTCGACTACAATCAATGTGTCATTTTCTTATTTGATTTTTGCTTGGTGTTCGTCCTTTCTTCCAATCTTCTTAGTTGGATTTTTCTTCACTTGAGACTATTTCCAGATCAACATTTTCAAATTCTTGTTTTCCTTCAATTTTATCGTCCAGATTTTCTATTTGAAAATTTTCCAACTATGATTCCTTTGTTTTTTCTTCCGTATGTGAAACCAATTTGTTCTTGAAATCTTGCAAATGAATTGATAGTTGATCGATATGTGAGTCATTTTCCCCAATATGTTGGATTTCTTTTGTTATTTTCTTTATTTCCTCCAGTGCTACGGCCTAAGGGATCAAAGTAGTCATTTTGTTTTTGTTTTTTTTTCTCTCTAATCGTTCTTTGGATAAAAAAAAGAAGAAAAAAGTAGTCATTTTGTTAGGGAATTGAATATGTTTAAATCTCATAGTGGGTATAAGACTCATCCATTGACTTTCTTGAATCAACCTTTCTTGATCGTGTTTCATAACCAAAAGAGTAATTTTGAGTCTTGAGCGTTCTTCTAGGGTTGTAAAAATCCATTCTTGACGATTCTTTAGTTCATTGAACTCCCAAGTTCTACGTTGATTTCTTAAAAAATGGGTTTGATCGAATCATTGGGCCGTTTGTCGATATTTCCGTCTTCTTATTCCATCCCAAGCTTTCTTAGAAATATCATCGGAGTCACTAGAATCACTAGAATCAAATTTCCTTTGTGGATAATGATAGGTTCTTTGAGAAGATTGTTTAGTGATATATAATTAAATTTTCCTTCAACCACTAGCTTAAGCTTTTGGGTGAATTGGTGGTTTAATATCGTATCAGAGCAGGTGGTCCAGGAGGTCCTATGTTTAAGCCTCTACATTGTTGTTTCCTCCCCAATTAAAATTAATTTCCACTTGTTAGGCCTTTCAGATATTTCGAGCCCACAAGTAAGGGGAGTGTTAGTAATTGTAATTAAATTTGCCTTCAACCACTAGCTTAATATTTTGGGTGAATTGGTGGTTTAATAGATTGAACATAGGTAAAAATAGCAAGTTGAAATTCTTCTTCGGAATCACTTTAGTCAAAATTCCAGCACTGTTTTTGGAAGTAAAATTGATTTTCTTGCCTATACAAACTGCTGTGTTTTTCTTGGACATCTTCTTTGATTGGTAATAGTCCTTTCCTCCCCAATTTCTTCTTTCTTTCTTGAAATTTTAAAGGTTCCCCCAAATTAGATGTGTGTTCGACAATAAGCACAACTCATGAAGCTCCTTCTAGTGATTGGCGTCACCAAAAGTTTCTCGATCTTCCATCGTTTGTAGTCAACGTTGGCCCAGGTGGCCGCTCTGAAACTAAAATGATGTAGTCTAAGTAACCTTAAGGAGTAATTATCCAAGAACCAAGACTGTAAATCTTTTTATTAGAATGAATAATGTGTTTCAGACAAGAGGGGAAGGCTCTTATTTATAGAGTTTATTACAAGTGGTGGGTAGAGAGGGAATTAACCTAGAATAGTAACTAATTACCCAATTAACTTCTAGTCTTCTTACATTAGGGGCTCTCTGTTTTTTTTTTTTGTTTTAATCCAACACATTTGGTTGTACTTCTTTTCATTTTGTCTACTTCTTTTTCAGTTGTAATGTTTCCCTCTCTTTTGGGCTTCTTTTTTATTCTTTTCATTTCGTCTACTTCTTTGGATTATTTCATTCATCAATAAATTAATTTTTTATTAAAAAAATCCAACCGAATCCATAATTAGGGACTAAGGGTATTTCAATTTTTCCCATGTTTTTACTATAATTGCTAATTCAGTATTGTCTAGCCTCCAAGTCCTCTTTTATTGCGGTTAGTATTAAAATTCTGTTTTCTGCATGACTTACCTCAGAGGCAGAAATCCTCGCAGCCCCACCAAAGATTGTCTACAGCAAACTGATCTTACGGTAAACTTGGTTTATACTCCCCTACCTTTGGCAGAGGATGATAAGATGAAAATTTTGTATCACTTTCATCTATTTTATCAATATTATTCACTTTAAGAATGAAATAAGGCAAGCGATCTTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTGCGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCGTGAAAAAAGCTTTTTTTTGTTTACTATTTTATTTTGTGATTCTCTTCTTTATGTTGTTATCATGTGGTTAGAATACTCCTCCTGAATTGATAGGTGGAGGATTATGTCCCTCTCCAAAGGGGGTAGGCTAACTCTTATGCAATTGGTTCTCAACAGCCTTCCTTGTTACTTATTTTCCCTTGCACAAGCCCCGGTTGGTGTTATCAATAGACTGGAAAAGATTATTTGAAATTTTGTTTGGATAGGGTTTATTAATTCGGTTTTCCACATTGTCAAATGGGATTGTTCTTCTCGCCTAATCTCTTATGGTGGCCTTGAGATTGGATCATTTAGGCAAAAGAACACTGCTCTTGTCAATAAATGGCTTTGAAGGTTTAGTAAGGAAGAAACCACTTAATGGAGGCGCTTAATTGTGGCCATTTACCGCTTAGAGGAGAGGGTGGTCTACTAAAGCTCCGAACAGAGGAAGGTCTTATAGATTGTGGGCCGTTATTTTGAAGCATAAGGAGACTTATAAATTCACAGCTTTTTTGTTGGGAGAGGGAACAAAAATCAGATTCTGGAAAGATAGTTGGTGTGGCGTGGAACCGCTTGCATAAAAATTCCTCTACCTTGTTCTCCTTGGCACTGAACAAAGATGCTTTTGTGTCTGAATGTTGGTGTAATGTTACTCATTCGTGGAACTTGGGCCTTAGAAGAAATGTGCTCGATAATGAGCTTGACAACGTGGCCTCAATTCTAAAAAATTTCCATCCTTGGCCCCCTCAGATGGTGGTGATAGTCTTAAATGGACTTCTAACGTTAATGGCAGCTTTACTACAAAGTCTACTTTCCGTAATTTTACCAAGAGATCTCCCTCCATGCTGCTCCTCCGATTCACCACATGTGGAAAACTAAAATCTCGAAAAAGGTGAAATTCTTCTTTTGGTCGCTCGCCTATAGAAGTCTAACACTCGTGAGAAAATTTAAAAAAAAAAAAAAAAATCCAACACATATGCTCAGCCCCTCAATGTTCTGTTCTTGTTTCAAAGATGAGGAGACCCTAAACCACTTATTTTTGCACTCTCTTTACTAGGAAAGCTTGGAACAATTTGTTTAGAATTTTGATTTGGAGCTTTGTCTTCCTAGTAAGGTTGATAGTTGGATGCTGGAAGGGCTTAACATTAGAGGTTATAGTTCGAAAGGAAACATCTTATGGAGATGTGCTACCCAGTTTCTTTTGTGGTGCATTTGGAAATAAAGGAATAGTAGAATTTTTTAAGATAGCTATAACTCTTTTGATTCTTTTTGGACTGTGTTGCAACACACAACTTCTTAGTGGAGTACGAATTACACCAAAGACTTCTGTAATTACAGCCTTTCTATGATTTTCAACAATTGGAAGGTGATTATTCTTTAGCTTCTGTTGGGGAGGGCCCTCTTTGTTTCCAAATTTATTTAAAGATTTTGATTGTTCAATCTTTTAAAGTGAAAGTTGCATTTCTGCTAAACATCATCGACCCAAACCTTGTAAGGGTTCCTCGCCTTTTTACTTCATTCACACTAATGTGTGGGGTCCGTCTAGAGTGTTGGCTTATAGTGGTAAGCGTTGAGTTGGGTTGGTTTGTTACCTTGATCACACTTGTTTAACTTGATTTTATCTTTTAACAAAAAAAATGAAGGTAGAAGAGGTTTTTGTTTGGTTTTACAATATGATTGAGACCTAGTCTCAAACTAAAATCCGCATTCTTCACTCTGATAATAGTACTGAATATTTTAACAAACAATTAACTTATTTTTTGCAAGATAAGGGTATTTTTCCATCAAGCTACATGTCAAGATACTCTTTAGCAAAATGACGTCGTTGAGCGAAAAAATAGATATTTACTTGAAGTTGCTTGTGCCCTTATGCTTTCTATGCATGTACCAAAATATTTGTGTGGTGATGCAGTCCTTACTGCTGCATACCTCATAAATCAAATGCCAACCAAGATTTTGAATTTTAAAACTCCTTTGAGTCGCTTCAAAACGGGTTTTTTCCTACTGTTAGATTGTTTTCTGACTTAACAATAAAAGTATTTGGGTGTATTGTTTATGTTCATATTCTTTACCCTATACTAACTAAACTTGATCCTTGAGCCGTTAAATACATTTCTGTATGCTATGTCTCCCATAAGAAGGCTTTCAAATGTTTTGACCCTTCAACCAAAAAGTTTTTGGAGAGTATGGACGTGCCTTTCTGTCTTCAAAGGGAGACATCTAACCTCGAAGATAATTTCTAGGACACTTCACTTACCCCAGACATCATTGGTCCTGAAATTATGAGTTATAATCCCTTGATGCCAAGTGTGGAAAGTTCTTCTTTAGGGAAGAAACACTACAAAAACCTGAACTTCAGATTTATACTAGAAAAACCTTGCCTCAAAGTAATTGAGAATAAACAGTTGATCTATCATAGGACCAATCTAATTCTTCGATGAATGATTCTGCAGATCTAGGTAACATACATCTCCTTCTCATAATTCTCCCAGTACTTCTCATAATTTTCCTAGTTCTCCTTACCCGATGTCTCTAATCTTGACATTCCAATTGCCCATAGGAAAATCACCCGTAAAGGTGCCAAATATCCCATTGCAAACTATCTTTCTTTATCACAGATTATCTAACAGTCATAAAGCCTTCACATCCAAAATAAACCACCTATTTGTTAGAAGGAATACACAGGAGGCCCTAAATGATTTGAATTGGAAAGTGGCAGTAATGGAAGAGATGAATGCACTGAAACAAAACTGCACATGGGACATAGTTGAACTACCTAAAAACAAGAAAACGGTTGGATGTAAGCGAGTGTTCACTGTATAATGTAAAGCTGATGGTAGTATTGAAAGGTACGAGGTCAGATTGGTTGCTAAGAAATTTACTCTGACCTATGGAGTTGATTATCAAGAAATATTTGCTCCAGTTGCTGAAATTAATTCCATAAGAATTTTGCTACATGTTGCAGTTAATTTTGATTGCCACTTTATCAACTGGATGTTAAGAATGACTTTCTCAATTGGATCATGAAGAAGAGGTATTTATACGTTTGCTACCTGGTTTTGAGGTGATCTCAGGATTAACAAAGTGTGAGTTAAAGTAATCATTATATGAGTCTCCTAGAGTCTGGTTTGAACGTTTTAAAAAAGCAGTCACAAGCTATGGATCTAGTCAAAGTCAAGTCAATCGTACTATGCTCTATAAACATACAGGAAATGACAAGGTTATGTTTTTGATAGTTTATGTTCATGATATCATTTTTGATGAGACATGACTTTCTTGAAGAAAAAGTTAGTTGATGATTTTCAAATCAGACACCTAGGAACTATGAAATATTAACCAGGCATGGAGTTTACTAGGTCCAGAAGTGGCATTCTTGTCAACCGAAGGAAGTATATTTTTTATCTACGGAAAGAAATAGGTTTACTTGGCTGTAGGGTGGTTGAAACTCCTATTAAGCAGAACTTGAAATTAGAAGTTGTTGAAAAAGAAATAAAAGAAAAAGAGAAGTATCAGAGATTTGTGGGGAGACTTACATATCTCGATCACACACGTCCTGACATCGCTTTCGCAGTGAATACTTAGTATGGGAAGTCAGTTCATGCATGCTCCTGGACCAGCTCACTTTGATGTTCACAGAATTCTAATATATTTGAAAAGTACTCTAGGAAAAGGCATATTGTTTTAAAAACATGACCACTAAATGTCGAAGTGTACACTGATACAGATTGGTTAGGTAGTACAACTGATAAAAGAGCCACTTCTGGTTATTGCTTTTGTTGGAGGAAATTTAGTTACTTGATGAAGCAAAAAATAGAGCATGGTTGCGAGTAGCGCAGAAGCAGAATTTAAAGCATCAACCCATGGTATTTGTAAGGGCATATGGATAAGAAGACTATTGGAAGAATTGAGATTCTCCCAGAAAATGCCTATGCTCATTTATTGTGATAACAAGGCAACAATTTCCATTGCCCACAGTCCAGTCCTTCATGATAGGACGGAACATAGTGAAGGTGATAAACACTTTATGAAGGAAAAGATTGTTCAAGGGATAATATGCATCCCTTATCTTTTGAGAACAAAACAAATCGCAAATGTGTTAACTAAAGGTCTTCCAAAATAGCTATTCAACAACTTAATTGAAAAGTTGGCTATGGATGATATCTTAACTTGAGGGGGAGTGTTGATTATTTCCTTTATTGTTAATATTTTCATTGTATTAAAGAAACATTTGTGTATTTGTTTTTTCCTATTTTGTATTGGGTATTTCTTCTATTTAATAAAACCCTTTCTTTCGAAGAGAAATAACAGAAAATACATTCTGCACAACATGTTTTATTATTCTATTCCATAAATCATTCCATCTTCAGACATATCAGTTGCACGGATACAAAGCAAGGATCATGCACTTGGACTTGAACTTCTTGAATTTGCAAATTTTTTAGAATGTTTAAGATTTGTAATAGTTAAGGAGATTAAATATCTCATGCATTCGTATATATTTCAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGTAAATATGTCTTAAGATGTTTTACATGAAGGTCAAAACCAACATCTCTTATGTCTGTTTGATATCTGTCTAAGATTACTCCCTTTTCTAACATAAATTATTTTTTTGTTAAAAAAAAATATATCGTTCTTGGTTATTGATGAAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAGATTGATTCAATGCCTGCTCGAGAGAAGTAAGAAGTCCGTGCATGACCCTGAACTTTTGGGGTGCCTCAGAACCTTTGTAAGGATATCGAAGAATTTGACTCAACTCATGCTGTGGTGCAAGTAAGCATTTCTGAAATCTGAACTTTTGGATAGTTTGTTAACGTGCATGGTTGAGAGTGATTTTGAAATGATTAAAATTTCTTTTACCATGTTTAAAATAATTTCGAAACATGGATGGATGTGATCATTCAATCAATTTAATATTTAATTTTATACTTTTAAATACAATTTTATATTATTAGAATTGATTTTGAATGACAAAATATATTTCAAAGTAATTTTCATCATTTCAGAATCACTTTCAAACATGCTCGGAACTTGTTACAGTCAACAGCAGCCAAAGTGAAGTGATTTGAAGAATCCCTTGTGCTTGCCGCAATCCTCAGTTAGAATTTCTCTCCCGTTCTCCATGTTGCGGTGGATTTCTGTTATATTTGATTATCCATAGAGTTGAGTAATGGAGGTGCATGAGTGTGAGAGAATGAGTAGTCAGATTTACCCAGTACTGGGCGACATGTTATTATATGCACAATATTATCAGTGTATGAAGTTTTGATAAAGGTGTGATGTCTCGTTTGTACCAACCTCTGTTTATCATGTTTTCATTATGTGTATTTTACTTTGCATTTATTTTTGTGTGATTCCTCACTACTTTGCATGTGGCTCAAAACGTATTATGGGG

mRNA sequence

ATGTCTTTAGCTCCACCCACCTCCCTTTATCCCTATTCTTCCCACTCTCATCCCCTCCCCAAATCCCATTTATCTTCCTTTACTCAACGTTCCCATCCCAACTTCTTTTCCTTATGCTTTCCCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCACTCCCTTAAATACTCAGCTTTCAAAACCGACACTGGACTCGGAGATTCCCATGATGCTGACCAACCTCATAGTTTGAAATTTGCACCTGGAGCTTCTGCCCACAAGACTCGACTCTTCACCGTTGGGGATAAAGTTATCACTACCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCAGTTCCCATTTCATGCTAGTTCAATTGTTCCCCACATAAAAGATTCCATGCCACGTTTCTGCTGTCAAGCCTCGCTTCGGGCTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGGTTGACAAGAGCGGCAAATTTTGTAGTCCGAGAGCTGCTAGAGAGCTTGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTTTTTGAGAAAAGGTTAAATGCCCGACGAGAATCAGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCGGTTACCGTTGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTGCGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAGATTGATTCAATGCCTGCTCGAGAGAAGTAA

Coding sequence (CDS)

ATGTCTTTAGCTCCACCCACCTCCCTTTATCCCTATTCTTCCCACTCTCATCCCCTCCCCAAATCCCATTTATCTTCCTTTACTCAACGTTCCCATCCCAACTTCTTTTCCTTATGCTTTCCCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCACTCCCTTAAATACTCAGCTTTCAAAACCGACACTGGACTCGGAGATTCCCATGATGCTGACCAACCTCATAGTTTGAAATTTGCACCTGGAGCTTCTGCCCACAAGACTCGACTCTTCACCGTTGGGGATAAAGTTATCACTACCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCAGTTCCCATTTCATGCTAGTTCAATTGTTCCCCACATAAAAGATTCCATGCCACGTTTCTGCTGTCAAGCCTCGCTTCGGGCTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGGTTGACAAGAGCGGCAAATTTTGTAGTCCGAGAGCTGCTAGAGAGCTTGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTTTTTGAGAAAAGGTTAAATGCCCGACGAGAATCAGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCGGTTACCGTTGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTGCGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAGATTGATTCAATGCCTGCTCGAGAGAAGTAA

Protein sequence

MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

Homology

[Close]

BLAST of CsaV3_4G017570.1 vs. NCBI nr
Match: KGN54018.1 (hypothetical protein Csa_4G268020 [Cucumis sativus])

HSP 1 Score: 756.5 bits (1952), Expect = 4.3e-215
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0


Query: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60
           MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA
Sbjct: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60

Query: 61  FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF 120
           FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF
Sbjct: 61  FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF 120

Query: 121 HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP 180
           HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP
Sbjct: 121 HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP 180

Query: 181 RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE 240
           RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE
Sbjct: 181 RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE 240

Query: 241 TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV 300
           TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV
Sbjct: 241 TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV 300

Query: 301 IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 360
           IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
Sbjct: 301 IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 360

Query: 361 RTFVKDIKEIDSMPAREK 379
           RTFVKDIKEIDSMPAREK
Sbjct: 361 RTFVKDIKEIDSMPAREK 378

[Close]

BLAST of CsaV3_4G017570.1 vs. NCBI nr
Match: XP_008449897.1 (PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo])

HSP 1 Score: 691.4 bits (1783), Expect = 1.7e-195
Identity = 351/389 (90.23%), Postives = 360/389 (92.54%), Query Frame = 0


Query: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60
           MSLAPPTSLY YSSHSHPLPKSHLSSFTQRSHPN F + F FHLSFSTSFSTLHS K SA
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKSHLSSFTQRSHPNLFPVRFLFHLSFSTSFSTLHSFKSSA 60

Query: 61  FKTDTGLGDSHDA-----------DQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFS 120
           FK D GLGDSHDA           +QPH LKFAPGASAHKTRLF VGDKVITTRPNFHFS
Sbjct: 61  FKIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVITTRPNFHFS 120

Query: 121 YHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIP 180
            HISGICQFPFHASSIVPH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+SSIE IP
Sbjct: 121 NHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIP 180

Query: 181 KVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNH 240
           K+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNH
Sbjct: 181 KIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNH 240

Query: 241 MSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDG 300
           MSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTRKLLVAV DG
Sbjct: 241 MSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDG 300

Query: 301 WDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCD 360
           WD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCD
Sbjct: 301 WDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCD 360

Query: 361 GAAPRIINGCLRTFVKDIKEIDSMPAREK 379
           GAAPRIINGCLRTFVKDIKE DS PAREK
Sbjct: 361 GAAPRIINGCLRTFVKDIKETDSTPAREK 389

[Close]

BLAST of CsaV3_4G017570.1 vs. NCBI nr
Match: XP_004149639.2 (PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus])

HSP 1 Score: 609.8 bits (1571), Expect = 6.5e-171
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 75  QPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMP 134
           QPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMP
Sbjct: 11  QPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMP 70

Query: 135 RFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAA 194
           RFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAA
Sbjct: 71  RFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAA 130

Query: 195 CLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDER 254
           CLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDER
Sbjct: 131 CLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDER 190

Query: 255 DSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRIL 314
           DSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRIL
Sbjct: 191 DSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRIL 250

Query: 315 ELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMP 374
           ELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMP
Sbjct: 251 ELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMP 310

Query: 375 AREK 379
           AREK
Sbjct: 311 AREK 314

[Close]

BLAST of CsaV3_4G017570.1 vs. NCBI nr
Match: XP_016900769.1 (PREDICTED: uncharacterized protein LOC103491638 isoform X2 [Cucumis melo])

HSP 1 Score: 526.9 bits (1356), Expect = 5.5e-146
Identity = 261/275 (94.91%), Postives = 268/275 (97.45%), Query Frame = 0


Query: 104 PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 163
           PNFHFS HISGICQFPFHASSIVPH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+S
Sbjct: 15  PNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVS 74

Query: 164 SIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 223
           SIE IPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTS
Sbjct: 75  SIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTS 134

Query: 224 LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLL 283
           LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTRKLL
Sbjct: 135 LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLL 194

Query: 284 VAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 343
           VAV DGWD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL
Sbjct: 195 VAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 254

Query: 344 AKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 379
           AKRFCDGAAPRIINGCLRTFVKDIKE DS PAREK
Sbjct: 255 AKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREK 289

[Close]

BLAST of CsaV3_4G017570.1 vs. NCBI nr
Match: XP_023007062.1 (uncharacterized protein LOC111499665 [Cucurbita maxima])

HSP 1 Score: 475.3 bits (1222), Expect = 1.9e-130
Identity = 235/282 (83.33%), Postives = 255/282 (90.43%), Query Frame = 0


Query: 97  DKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEE 156
           D VI TRPNFHFS H+SGIC FPF  S+IVP++K+S+P  C QASLRASTSFS+N V +E
Sbjct: 15  DNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKE 74

Query: 157 RSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESG 216
            SS+ +SSIE IPK+DKSG+FCSPRAARELALSI+YA+CLEGSDPVRLFEKRLNAR E G
Sbjct: 75  SSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPG 134

Query: 217 YEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLIL 276
           YEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLIL
Sbjct: 135 YEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLIL 194

Query: 277 RFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIV 336
           RFTRKLLVAV D WDS  LKI+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIV
Sbjct: 195 RFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIV 254

Query: 337 INEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 379
           INEAVDLAKRFCDGAAPRIINGCLRTFVKDI+E DS  AR K
Sbjct: 255 INEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVK 296

[Close]

BLAST of CsaV3_4G017570.1 vs. TAIR10
Match: AT4G26370.1 (antitermination NusB domain-containing protein)

HSP 1 Score: 318.9 bits (816), Expect = 4.1e-87
Identity = 157/220 (71.36%), Postives = 182/220 (82.73%), Query Frame = 0


Query: 149 SENRVAEERSSISISSIEMI--PKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFE 208
           S  R A    +IS   ++ +  PK+DKSG+  SPRAARELAL I+YAACLEGSDP+RLFE
Sbjct: 64  SPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFE 123

Query: 209 KRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAP 268
           KR+NARRE GYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DE++S IEAE+L+AP
Sbjct: 124 KRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAP 183

Query: 269 PKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEI 328
           PK+VYSKL+LRF +KLL AV D WDS  + IEK+ PP WK+ PAGRILE  ILHLAMSE+
Sbjct: 184 PKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEV 243

Query: 329 TVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD 367
            V+ TRH IVINEAVDLAKRFCDG+APRIINGCLRTFVKD
Sbjct: 244 AVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKD 283

[Close]

BLAST of CsaV3_4G017570.1 vs. Swiss-Prot
Match: sp|Q18B61|NUSB_PEPD6 (Transcription antitermination protein NusB OS=Peptoclostridium difficile (strain 630) OX=272563 GN=nusB PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-06
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 296 KIEKVIPPTWKNKPAGRI--LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAP 355
           KI+++I    KN    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P
Sbjct: 94  KIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSP 153

Query: 356 RIINGCLRTFVKDI 368
           + ING L + V +I
Sbjct: 154 KFINGILGSVVDEI 167

[Close]

BLAST of CsaV3_4G017570.1 vs. Swiss-Prot
Match: sp|A7GWZ7|NUSB_CAMC5 (Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.92) OX=360105 GN=nusB PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.9e-05
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 296 KIEKVIPPTWKNKPAGR--ILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAP 355
           ++++++ P  K K   R  I+EL IL L + E+   GT   ++INEA++LAK     +AP
Sbjct: 58  ELDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIINEAIELAKELGGDSAP 117

Query: 356 RIINGCL 361
           + ING L
Sbjct: 118 KFINGVL 124

[Close]

BLAST of CsaV3_4G017570.1 vs. Swiss-Prot
Match: sp|B1WXY6|NUSB_CYAA5 (Transcription antitermination protein NusB OS=Cyanothece sp. (strain ATCC 51142) OX=43989 GN=nusB PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.9e-05
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 305 WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 364
           W+ K   +I +  IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F 
Sbjct: 145 WQLKRLAKI-DQDILRLAVAEILFLDVPEKVSINEAVELAKRYSDDDGYRFINGVLRRFT 204

Query: 365 KDIK 369
             IK
Sbjct: 205 DHIK 207

[Close]

BLAST of CsaV3_4G017570.1 vs. Swiss-Prot
Match: sp|B1XIZ3|NUSB_SYNP2 (Transcription antitermination protein NusB OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=nusB PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 8.4e-05
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 314 LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSM 373
           L+  IL +A++EI  + T +++ INEAV+LAKR+ D    R ING LR     ++  DS+
Sbjct: 153 LDRDILRIAVAEILFLETPYKVAINEAVELAKRYSDEDGHRFINGVLRRVSDRLRAEDSL 212

[Close]

BLAST of CsaV3_4G017570.1 vs. Swiss-Prot
Match: sp|Q8GIR7|NUSB_SYNE7 (Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=nusB PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.9e-04
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 314 LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 362
           L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Sbjct: 149 LDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGRRFINGVLR 196

[Close]

BLAST of CsaV3_4G017570.1 vs. TrEMBL
Match: tr|A0A0A0KWZ5|A0A0A0KWZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268020 PE=4 SV=1)

HSP 1 Score: 756.5 bits (1952), Expect = 2.8e-215
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0


Query: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60
           MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA
Sbjct: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60

Query: 61  FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF 120
           FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF
Sbjct: 61  FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF 120

Query: 121 HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP 180
           HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP
Sbjct: 121 HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP 180

Query: 181 RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE 240
           RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE
Sbjct: 181 RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE 240

Query: 241 TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV 300
           TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV
Sbjct: 241 TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV 300

Query: 301 IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 360
           IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
Sbjct: 301 IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 360

Query: 361 RTFVKDIKEIDSMPAREK 379
           RTFVKDIKEIDSMPAREK
Sbjct: 361 RTFVKDIKEIDSMPAREK 378

[Close]

BLAST of CsaV3_4G017570.1 vs. TrEMBL
Match: tr|A0A1S3BNR2|A0A1S3BNR2_CUCME (uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=4 SV=1)

HSP 1 Score: 691.4 bits (1783), Expect = 1.1e-195
Identity = 351/389 (90.23%), Postives = 360/389 (92.54%), Query Frame = 0


Query: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60
           MSLAPPTSLY YSSHSHPLPKSHLSSFTQRSHPN F + F FHLSFSTSFSTLHS K SA
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKSHLSSFTQRSHPNLFPVRFLFHLSFSTSFSTLHSFKSSA 60

Query: 61  FKTDTGLGDSHDA-----------DQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFS 120
           FK D GLGDSHDA           +QPH LKFAPGASAHKTRLF VGDKVITTRPNFHFS
Sbjct: 61  FKIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVITTRPNFHFS 120

Query: 121 YHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIP 180
            HISGICQFPFHASSIVPH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+SSIE IP
Sbjct: 121 NHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIP 180

Query: 181 KVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNH 240
           K+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNH
Sbjct: 181 KIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNH 240

Query: 241 MSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDG 300
           MSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTRKLLVAV DG
Sbjct: 241 MSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDG 300

Query: 301 WDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCD 360
           WD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCD
Sbjct: 301 WDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCD 360

Query: 361 GAAPRIINGCLRTFVKDIKEIDSMPAREK 379
           GAAPRIINGCLRTFVKDIKE DS PAREK
Sbjct: 361 GAAPRIINGCLRTFVKDIKETDSTPAREK 389

[Close]

BLAST of CsaV3_4G017570.1 vs. TrEMBL
Match: tr|A0A1S4DXQ5|A0A1S4DXQ5_CUCME (uncharacterized protein LOC103491638 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=4 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 3.6e-146
Identity = 261/275 (94.91%), Postives = 268/275 (97.45%), Query Frame = 0


Query: 104 PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 163
           PNFHFS HISGICQFPFHASSIVPH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+S
Sbjct: 15  PNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVS 74

Query: 164 SIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 223
           SIE IPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTS
Sbjct: 75  SIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTS 134

Query: 224 LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLL 283
           LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTRKLL
Sbjct: 135 LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLL 194

Query: 284 VAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 343
           VAV DGWD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL
Sbjct: 195 VAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 254

Query: 344 AKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 379
           AKRFCDGAAPRIINGCLRTFVKDIKE DS PAREK
Sbjct: 255 AKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREK 289

[Close]

BLAST of CsaV3_4G017570.1 vs. TrEMBL
Match: tr|A0A2N9HGW1|A0A2N9HGW1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39050 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.5e-96
Identity = 174/229 (75.98%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 150 ENRVAEERSSISISSI-EMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKR 209
           E  V + + ++S S++  ++PK+DKSG+FCSPRAARELALSIVYAACLEGSDPVRLFEKR
Sbjct: 77  EQVVEKSKDALSTSTLSSLLPKIDKSGRFCSPRAARELALSIVYAACLEGSDPVRLFEKR 136

Query: 210 LNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK 269
           +NARRE  YEFDK SL+EYNHM+FGGPPVTVET+EEADELLR DE++S IEAE+LAAPPK
Sbjct: 137 MNARREPSYEFDKASLLEYNHMNFGGPPVTVETVEEADELLRNDEKESAIEAEVLAAPPK 196

Query: 270 IVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITV 329
           + Y+KLILRFTRKLLVAVGD WDS    I+ V+P  WKN+PAGRILELCILHLAMSEITV
Sbjct: 197 LAYNKLILRFTRKLLVAVGDRWDSDVHVIDNVVPSNWKNEPAGRILELCILHLAMSEITV 256

Query: 330 IGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPARE 378
           +GTRH IV+NEAVDLAKRFCDGAAPR+INGCLRTFVK ++EI S  A E
Sbjct: 257 LGTRHPIVVNEAVDLAKRFCDGAAPRVINGCLRTFVKGLEEIGSAQASE 305

[Close]

BLAST of CsaV3_4G017570.1 vs. TrEMBL
Match: tr|M5WJ39|M5WJ39_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G001800 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.0e-95
Identity = 187/259 (72.20%), Postives = 213/259 (82.24%), Query Frame = 0


Query: 111 HISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPK 170
           H+ G+ Q P  A+     +  S PR     SLR ST F+ +   E+ +S    S EM+PK
Sbjct: 43  HLLGLIQRPLLAT-----VSLSSPR----TSLRTST-FTLDEALEKPNS---DSREMLPK 102

Query: 171 VDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHM 230
           +DKSG+FCSPRAARELALSIVYAACLEGSDPVRLFEKR+N RRE GYEFD+ SL+EYN M
Sbjct: 103 IDKSGRFCSPRAARELALSIVYAACLEGSDPVRLFEKRMNVRREPGYEFDRASLLEYNPM 162

Query: 231 SFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGW 290
           SFGGPPVTVET+EEADELLR DE++S IEAE+LAAPPK+VYSKLILRFTRKLLVAV D W
Sbjct: 163 SFGGPPVTVETVEEADELLRNDEKESAIEAEVLAAPPKLVYSKLILRFTRKLLVAVMDKW 222

Query: 291 DSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDG 350
           DS  L I+KV PP WK++PAGRILELCILHLAMSEITV+ TRH IVINEAVDLAKRFCDG
Sbjct: 223 DSHVLVIDKVAPPNWKDEPAGRILELCILHLAMSEITVLETRHPIVINEAVDLAKRFCDG 282

Query: 351 AAPRIINGCLRTFVKDIKE 370
           +APR+INGCLRTFVK I+E
Sbjct: 283 SAPRVINGCLRTFVKGIEE 288

The following BLAST results are available for this feature:

BLAST of CsaV3_4G017570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54018.1	4.3e-215	100.00	hypothetical protein Csa_4G268020 [Cucumis sativus]	[more]
XP_008449897.1	1.7e-195	90.23	PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo]	[more]
XP_004149639.2	6.5e-171	100.00	PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus]	[more]
XP_016900769.1	5.5e-146	94.91	PREDICTED: uncharacterized protein LOC103491638 isoform X2 [Cucumis melo]	[more]
XP_023007062.1	1.9e-130	83.33	uncharacterized protein LOC111499665 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G017570.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26370.1	4.1e-87	71.36	antitermination NusB domain-containing protein	[more]

BLAST of CsaV3_4G017570.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q18B61\|NUSB_PEPD6	2.6e-06	39.19	Transcription antitermination protein NusB OS=Peptoclostridium difficile (strain...	[more]
sp\|A7GWZ7\|NUSB_CAMC5	2.9e-05	38.81	Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.9...	[more]
sp\|B1WXY6\|NUSB_CYAA5	4.9e-05	43.75	Transcription antitermination protein NusB OS=Cyanothece sp. (strain ATCC 51142)...	[more]
sp\|B1XIZ3\|NUSB_SYNP2	8.4e-05	41.67	Transcription antitermination protein NusB OS=Synechococcus sp. (strain ATCC 272...	[more]
sp\|Q8GIR7\|NUSB_SYNE7	1.9e-04	52.08	Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PC...	[more]

BLAST of CsaV3_4G017570.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWZ5\|A0A0A0KWZ5_CUCSA	2.8e-215	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268020 PE=4 SV=1	[more]
tr\|A0A1S3BNR2\|A0A1S3BNR2_CUCME	1.1e-195	90.23	uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4DXQ5\|A0A1S4DXQ5_CUCME	3.6e-146	94.91	uncharacterized protein LOC103491638 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2N9HGW1\|A0A2N9HGW1_FAGSY	3.5e-96	75.98	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39050 PE=4 SV=1	[more]
tr\|M5WJ39\|M5WJ39_PRUPE	1.0e-95	72.20	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G001800 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006353	DNA-templated transcription, termination
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011605	NusB_fam
IPR006027	NusB_RsmB_TIM44
IPR035926	NusB-like_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G017570	CsaV3_4G017570	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G017570.1	CsaV3_4G017570.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G017570.1.exon9	CsaV3_4G017570.1.exon9	exon
CsaV3_4G017570.1.exon8	CsaV3_4G017570.1.exon8	exon
CsaV3_4G017570.1.exon7	CsaV3_4G017570.1.exon7	exon
CsaV3_4G017570.1.exon6	CsaV3_4G017570.1.exon6	exon
CsaV3_4G017570.1.exon5	CsaV3_4G017570.1.exon5	exon
CsaV3_4G017570.1.exon4	CsaV3_4G017570.1.exon4	exon
CsaV3_4G017570.1.exon3	CsaV3_4G017570.1.exon3	exon
CsaV3_4G017570.1.exon2	CsaV3_4G017570.1.exon2	exon
CsaV3_4G017570.1.exon1	CsaV3_4G017570.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G017570.1.cds8	CsaV3_4G017570.1.cds8	CDS
CsaV3_4G017570.1.cds7	CsaV3_4G017570.1.cds7	CDS
CsaV3_4G017570.1.cds6	CsaV3_4G017570.1.cds6	CDS
CsaV3_4G017570.1.cds5	CsaV3_4G017570.1.cds5	CDS
CsaV3_4G017570.1.cds4	CsaV3_4G017570.1.cds4	CDS
CsaV3_4G017570.1.cds3	CsaV3_4G017570.1.cds3	CDS
CsaV3_4G017570.1.cds2	CsaV3_4G017570.1.cds2	CDS
CsaV3_4G017570.1.cds1	CsaV3_4G017570.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035926	NusB-like superfamily	GENE3D	G3DSA:1.10.940.10		coord: 249..372 e-value: 2.8E-11 score: 45.5
IPR035926	NusB-like superfamily	SUPERFAMILY	SSF48013	NusB-like	coord: 178..213 coord: 271..368
IPR006027	NusB/RsmB/TIM44	PFAM	PF01029	NusB	coord: 281..365 e-value: 3.4E-10 score: 40.2
IPR011605	NusB antitermination factor	PANTHER	PTHR11078	N UTILIZATION SUBSTANCE PROTEIN B-RELATED	coord: 167..370