CsaV3_4G017560.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATATAAAGATTTCAATTCTATTTGGAAAGGTGAACTTAGCATAAATTTTGTTTATTGGAATAGAAAATCTGAAACACCTTTTAATTATTATATGTGAAAATTATTGAAAATAGTTAGAAATACATCTCAATAATACTTTAATTCATTCTGCTATTTTCGAAACATTTTGTGATTGACGACTTGACGTTCTAAAACTAGAAAATTAGGAAGGTATAAGGAAAAGAAGGAACCCTAATTCATCTGCTTTTTCTCCGACTCACGTTCAACCGCCCAGCCCCTTCCTTGTCTCCGGTAGCATCTCGATGACAGTCCTTTGAGATAAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAACTGATTTGCTGATTAAAAGGAGCGATATGTGTATTATTTGCGGAATCATCTTCTGAACAATTCATCCTAGGGATAAGGTTGAAGATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGGTGCGTATCATTTATTCTGCACTTTAATACTTCGGGGTGGAAAATATGAATGAGTTAGAGTACCTCTTGTTAATAAACTTTCCACGCATTGAAACATCAAGAAAAATATTTGCATTTTCCATTTGAGGAAATTCAGTGTCCTAGATTAACTTTACATGCATTCTGTCTAGTGTCTACTGGGTAAGTAGCCGAGAATGCAGTATCTACTTGAAGCACCCTTGTGTTGAGGTTGGAAGAGAAAGAAAAATCAAGGCAGCAGGTTTCATGCTACTTGTTTGAGATGAGTACATATTCTAATGCTATGATATATGATACAATCCACAAATTTGGTATTGAAAACTTCAGTCTATTTTTCCCATCTAACATCAAATACTACTGAGGTAGGTATGGCTATTCGATCGGCAATAAAACAAAGTACTATGGTTCTTTTTTTTTAGTTATCCTTTTACTTTTTAACTGCTTGTTATGTATATTTAGGCCCACTTTAAGGTGTTCTTTAAGTGTTGATATTTTGGAATCTGATACTCAAACCCTGTATTTGAGCAATTTTGCTGAGAGAGTTTTGATTTTCACAAGTTTCCATCGTCGAACTCAGCAATGCATTTAGGTTTGTTCTTCCGAATAATCTTTTAAGGATTATATAGAATTATAAAATAGACTGATTCTGTCCACGTTAAGTTTGAAAATCTCAGTGTGATAGTATTAAGTAATAGAAACGTACAAAGTTTTCCAACTCTGCTGGACTTTTAATGACTTCTAGATGTGATTCTACAACGAGTTAGATTTGTTCTATATATTCTCTCATTTTCTGTATTTTTTACGTTTACCTCTTGATTGGTATGTTATTTTATTAGTTTTTTGAGGAGTTGCAAGGAGCCAACTGAGGAATTTCTCCTCCATCCACTTTTCTCTCTCGGAGAAATGGCTGTTTTCATAGTAGGTTGGAGTATATGCTAATTTGTGGGGTTTGGGGTGCGAGAGAAATGATAGAATCTTCAAGGGAGAAATAACCGAATCTTGGATCTTGAAGATTCGTTTTTAATAATTAATCGCTTAGTCACATTTCACTTGATTGGAGCCCTTCCCCTTCTTATAGTTAGCTACACTTTCTGTGAACACCATTCTGTATGGTTATGTATTCTTTCACCTTGTTTTTCAACAAAAGTCTAGTTGTACATCAAAAACAAAATTTATCAGCATTTTGAACAAAAGAAAGGGATGGGATCTTGCTTCATTTATTTGCAATTATCCAATTGAACATGTGTACCTTTTCTTAAAAAAATTATTGTCAATATTTTCTAGCACAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTATGAATTCTCATATTCTGATGTTGATATAAGATCAAGAGTTGTTGTGTTGTTTACTTCTCTCAGTATGTATTTCAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGGTGTTATCTCTGTCTTCTTGTTAATCTCTACATTTTCAAACCGTGCCCCGGTGTGGTTACATAAGACTGATGTTGTTTGGCTGGCGACTTACTTTAGTTGAAATAATTCTATTTAATAATTTTAGCCCTAAATGTAAATTTCTCATGTTCACTTCATTCTATTGAACATAAGGATATTTTGCGCAACTAACAATCTTACCCAAACTGTGTTTCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGAAAGAGTGGGGAATTTTCCTATGCTACCAATGTATGGAAATTTTCCGTATCTCCCCGTGCATTTCTGCCGCATGACTTTTTATTTTTATATTACATATATGTAGAAATATACGTGAATCTACAGTTTATGGAATAAAAATACTTTTATCCATTGTATTAATTTTTTTTTATGACGGATTGATATTTTCATCAATATTTCTACGTTTTCAAAACGGTTTTGATATTAATATGAGGAGTGAATGGATATTTTCTGTTAGATTCCTAACTAAGTAAGGAGTAAATTTGACTAAGTGT ATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA ATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
BLAST of CsaV3_4G017560.1 vs. NCBI nr
Match: XP_004149640.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus] >KGN54019.1 hypothetical protein Csa_4G268030 [Cucumis sativus]) HSP 1 Score: 257.3 bits (656), Expect = 3.0e-65 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. NCBI nr
Match: XP_008449895.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]) HSP 1 Score: 253.8 bits (647), Expect = 3.3e-64 Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. NCBI nr
Match: XP_022153730.1 (mediator of RNA polymerase II transcription subunit 21 [Momordica charantia]) HSP 1 Score: 243.8 bits (621), Expect = 3.4e-61 Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. NCBI nr
Match: XP_022958635.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022958636.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022996209.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >XP_022996211.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima]) HSP 1 Score: 241.5 bits (615), Expect = 1.7e-60 Identity = 129/138 (93.48%), Postives = 131/138 (94.93%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. NCBI nr
Match: XP_023532119.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59 Identity = 127/138 (92.03%), Postives = 130/138 (94.20%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. TAIR10
Match: AT4G04780.1 (mediator 21) HSP 1 Score: 203.4 bits (516), Expect = 9.3e-53 Identity = 110/139 (79.14%), Postives = 120/139 (86.33%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. Swiss-Prot
Match: sp|C0LU16|MED21_ARATH (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51 Identity = 110/139 (79.14%), Postives = 120/139 (86.33%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. Swiss-Prot
Match: sp|Q7ZTI5|MED21_DANRE (Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN=med21 PE=2 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.6e-04 Identity = 37/139 (26.62%), Postives = 68/139 (48.92%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. TrEMBL
Match: tr|A0A0A0KZ00|A0A0A0KZ00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=4 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 2.0e-65 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. TrEMBL
Match: tr|A0A1S3BN38|A0A1S3BN38_CUCME (mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 GN=LOC103491637 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 2.2e-64 Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. TrEMBL
Match: tr|A0A1S4BT41|A0A1S4BT41_TOBAC (mediator of RNA polymerase II transcription subunit 21-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107811605 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 2.9e-56 Identity = 121/138 (87.68%), Postives = 125/138 (90.58%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. TrEMBL
Match: tr|A0A1J6IVT0|A0A1J6IVT0_NICAT (Mediator of rna polymerase ii transcription subunit 21 OS=Nicotiana attenuata OX=49451 GN=MED21 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 2.9e-56 Identity = 121/138 (87.68%), Postives = 125/138 (90.58%), Query Frame = 0
BLAST of CsaV3_4G017560.1 vs. TrEMBL
Match: tr|A0A1U7VUH3|A0A1U7VUH3_NICSY (mediator of RNA polymerase II transcription subunit 21-like isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104220774 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 2.9e-56 Identity = 121/138 (87.68%), Postives = 125/138 (90.58%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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