CsaV3_4G011830 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTGCACGAGAGTTTTATGAACCTGTAAGAGAAAAATCATCAATAAGTGTTGCGTCACTGCAATCAATAATCAAGGAAAAGTTTGGCTACCATGTTTCTTACCATAAGGCTTGGGATGGTAGGAGAAAAGTAGTGGCCAAAGTGTTTGACGATTGGGATGAGTCGTACAAATTATTACCAAGATGGTTGTACATTGTGAAGCACCCCAATCCTGAAACACTTGTTGAATGGAGG ATGCTTGCACGAGAGTTTTATGAACCTGTAAGAGAAAAATCATCAATAAGTGTTGCGTCACTGCAATCAATAATCAAGGAAAAGTTTGGCTACCATGTTTCTTACCATAAGGCTTGGGATGGTAGGAGAAAAGTAGTGGCCAAAGTGTTTGACGATTGGGATGAGTCGTACAAATTATTACCAAGATGGTTGTACATTGTGAAGCACCCCAATCCTGAAACACTTGTTGAATGGAGG ATGCTTGCACGAGAGTTTTATGAACCTGTAAGAGAAAAATCATCAATAAGTGTTGCGTCACTGCAATCAATAATCAAGGAAAAGTTTGGCTACCATGTTTCTTACCATAAGGCTTGGGATGGTAGGAGAAAAGTAGTGGCCAAAGTGTTTGACGATTGGGATGAGTCGTACAAATTATTACCAAGATGGTTGTACATTGTGAAGCACCCCAATCCTGAAACACTTGTTGAATGGAGG MLAREFYEPVREKSSISVASLQSIIKEKFGYHVSYHKAWDGRRKVVAKVFDDWDESYKLLPRWLYIVKHPNPETLVEWR
BLAST of CsaV3_4G011830 vs. NCBI nr
Match: XP_008456454.1 (PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo]) HSP 1 Score: 140.2 bits (352), Expect = 3.0e-30 Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. NCBI nr
Match: XP_022151714.1 (uncharacterized protein LOC111019626 [Momordica charantia]) HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22 Identity = 46/79 (58.23%), Postives = 64/79 (81.01%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. NCBI nr
Match: XP_022153527.1 (uncharacterized protein LOC111021011 [Momordica charantia]) HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22 Identity = 44/79 (55.70%), Postives = 63/79 (79.75%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. NCBI nr
Match: XP_022154586.1 (uncharacterized protein LOC111021813 [Momordica charantia]) HSP 1 Score: 108.6 bits (270), Expect = 9.8e-21 Identity = 43/79 (54.43%), Postives = 62/79 (78.48%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. NCBI nr
Match: XP_022143566.1 (uncharacterized protein LOC111013435 [Momordica charantia]) HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20 Identity = 40/79 (50.63%), Postives = 63/79 (79.75%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. TAIR10
Match: AT1G64260.1 (MuDR family transposase) HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07 Identity = 27/77 (35.06%), Postives = 46/77 (59.74%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. TAIR10
Match: AT1G49920.1 (MuDR family transposase) HSP 1 Score: 47.0 bits (110), Expect = 6.3e-06 Identity = 25/77 (32.47%), Postives = 42/77 (54.55%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. TAIR10
Match: AT1G64255.1 (MuDR family transposase) HSP 1 Score: 40.4 bits (93), Expect = 5.9e-04 Identity = 20/75 (26.67%), Postives = 38/75 (50.67%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. TrEMBL
Match: tr|A0A1S3C4J7|A0A1S3C4J7_CUCME (uncharacterized protein LOC103496397 OS=Cucumis melo OX=3656 GN=LOC103496397 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30 Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. TrEMBL
Match: tr|A5BD12|A5BD12_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_040275 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 9.6e-17 Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. TrEMBL
Match: tr|A5AJI6|A5AJI6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_038144 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 6.9e-15 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. TrEMBL
Match: tr|A5BJW1|A5BJW1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008825 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0
BLAST of CsaV3_4G011830 vs. TrEMBL
Match: tr|A5B5G3|A5B5G3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019818 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |