CsaV3_3G048270.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G048270.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 39402438 .. 39402835 (+)
Sequence length278
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGGTGCGTCCTTTTCTTCATTTCTTCATTATTTTAAATACCATAATCCAATTTGTTTTCTTATATATACGTTTAACTAATCTTTCCTTCTTCGTCTATTATTCTCTTAACAACCAGAAGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAA

mRNA sequence

GTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTA

Coding sequence (CDS)

GTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTA

Protein sequence

VLFLLLLSSLGEAPILSWLPRSSPPPPSSHSPAPIPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNPX
Homology
[Close]
BLAST of CsaV3_3G048270.1 vs. NCBI nr
Match: KGN60290.1 (hypothetical protein Csa_3G893400 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 36 PAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93
          PAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 37 PAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93

[Close]
BLAST of CsaV3_3G048270.1 vs. NCBI nr
Match: XP_011652602.1 (PREDICTED: uncharacterized protein At5g65660-like isoform X2 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 36  PAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93
           PAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 71  PAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 127

[Close]
BLAST of CsaV3_3G048270.1 vs. NCBI nr
Match: XP_004136243.1 (PREDICTED: uncharacterized protein At5g65660-like isoform X1 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 36  PAPDKVSPIHS-IWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93
           PAPDKVSPIHS IWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 71  PAPDKVSPIHSKIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 128

[Close]
BLAST of CsaV3_3G048270.1 vs. NCBI nr
Match: XP_008466113.1 (PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 7.0e-18
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 38  PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-------ALVEIVVQKPSQSISD 92
           PDK SPIH+IWKENRPQSVSVLMPGDEVPRFIA+ACP       ALVEIVVQKPSQSISD
Sbjct: 72  PDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEIVVQKPSQSISD 131

[Close]
BLAST of CsaV3_3G048270.1 vs. NCBI nr
Match: XP_022936981.1 (uncharacterized protein At5g65660-like [Cucurbita moschata])

HSP 1 Score: 93.2 bits (230), Expect = 5.0e-16
Identity = 50/73 (68.49%), Postives = 55/73 (75.34%), Query Frame = 0 

Query: 22  SSPPXXXXHSPAPIPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-----AL 81
           S PP     SP     PDK SPIH+IWKENRP+S++VLMPGDEVPRFIAMACP      L
Sbjct: 59  SIPPETPAFSP-----PDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPL 118

Query: 82  VEIVVQKPSQSIS 90
           VEIV+QKPSQSIS
Sbjct: 119 VEIVIQKPSQSIS 126

[Close]
BLAST of CsaV3_3G048270.1 vs. TrEMBL
Match: tr|A0A0A0LE40|A0A0A0LE40_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893400 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.3e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 36 PAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93
          PAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 37 PAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93

[Close]
BLAST of CsaV3_3G048270.1 vs. TrEMBL
Match: tr|A0A1S3CQS4|A0A1S3CQS4_CUCME (uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.6e-18
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 38  PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-------ALVEIVVQKPSQSISD 92
           PDK SPIH+IWKENRPQSVSVLMPGDEVPRFIA+ACP       ALVEIVVQKPSQSISD
Sbjct: 72  PDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEIVVQKPSQSISD 131

[Close]
BLAST of CsaV3_3G048270.1 vs. TrEMBL
Match: tr|A0A0B0NX10|A0A0B0NX10_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_23775 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 37  APDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPA------LVEIVVQKP 85
           +P K +P   + K+N+ QS SVLMPGDE+P+FIA+ CP        VE+ V+KP
Sbjct: 64  SPSKSNPHSPVLKKNQSQSFSVLMPGDEIPKFIALPCPCEPPRVDKVEVKVEKP 117

[Close]
BLAST of CsaV3_3G048270.1 vs. TrEMBL
Match: tr|A0A1U8I7R1|A0A1U8I7R1_GOSHI (uncharacterized protein At5g65660-like OS=Gossypium hirsutum OX=3635 GN=LOC107891844 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 37  APDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPA------LVEIVVQKP 85
           +P K +P   + K+N+ QS SVLMPGDE+P+FIA+ CP        VE+ V+KP
Sbjct: 64  SPSKSNPHSPVLKKNQSQSFSVLMPGDEIPKFIALPCPCEPPRVDKVEVKVEKP 117

[Close]
BLAST of CsaV3_3G048270.1 vs. TrEMBL
Match: tr|U5GPZ9|U5GPZ9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G108100v3 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-04
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 38  PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPA------LVEIVVQKP 85
           P K SP H   K N+ QS+ VLMPGD+VP+FIAMACP        + + +QKP
Sbjct: 63  PQKSSPPHVKLKRNQGQSLPVLMPGDQVPKFIAMACPCEPPRTEKITVQIQKP 115

The following BLAST results are available for this feature:
BLAST of CsaV3_3G048270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60290.11.1e-23100.00hypothetical protein Csa_3G893400 [Cucumis sativus][more]
XP_011652602.11.1e-23100.00PREDICTED: uncharacterized protein At5g65660-like isoform X2 [Cucumis sativus][more]
XP_004136243.12.7e-2298.28PREDICTED: uncharacterized protein At5g65660-like isoform X1 [Cucumis sativus][more]
XP_008466113.17.0e-1881.97PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo][more]
XP_022936981.15.0e-1668.49uncharacterized protein At5g65660-like [Cucurbita moschata][more]
BLAST of CsaV3_3G048270.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G048270.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G048270.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LE40|A0A0A0LE40_CUCSA7.3e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893400 PE=4 SV=1[more]
tr|A0A1S3CQS4|A0A1S3CQS4_CUCME4.6e-1881.97uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 P... [more]
tr|A0A0B0NX10|A0A0B0NX10_GOSAR2.9e-0448.15Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_23775 PE=4 SV=1[more]
tr|A0A1U8I7R1|A0A1U8I7R1_GOSHI2.9e-0448.15uncharacterized protein At5g65660-like OS=Gossypium hirsutum OX=3635 GN=LOC10789... [more]
tr|U5GPZ9|U5GPZ9_POPTR2.9e-0450.94Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G108100v3 PE=... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G048270CsaV3_3G048270gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G048270.1.exon1CsaV3_3G048270.1.exon1exon
CsaV3_3G048270.1.exon2CsaV3_3G048270.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G048270.1.cds1CsaV3_3G048270.1.cds1CDS
CsaV3_3G048270.1.cds2CsaV3_3G048270.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G048270.1CsaV3_3G048270.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..42