CsaV3_2G012030 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G012030
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 9451100 .. 9452391 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAAGTTAGTATATACAGTAAATATAATGTTTGCTCTCTTTTTTCTCTTAAAAAGTGAATCAATAGAACTTTTTGTGTTTTGATTCTTCTTTCTATTTTTCTACTCTTTTGTGATTTCTTAATTCAAATTTGTTTGCGAAGACGGCTCCTTAGTTAGCCGATATGATTTATCTACTCTCTGGATCAACTTGAAGGCTTTTCTTTAACATCTTTTCTCTTGTATTTTTTTACTTTGAGCTTATGTCCAATTTTTCGTGTAAGTCTTCTTTATTGTTAATTGTTAATGTATCTATTTGACATAATTAATGGAGGTACAATAGGATGTGTCAGTCGAGTTGAGATATTCTAGTATATACTCTAATCCCATTTCTTCTTAACAAAATGCTTGATCATTGAGAATAGTGCAACGCTAATTTGTGTTGATTTTTTTTTCTTCATATCAATTGTTCTAGAGTTGAACTTTTTATACTTTCAAATAACATTTTAGTCCTTATATTTTTAATTAACACGTTTCAATTAGTTCTCGTGCTTTCAATAAAATCTCAAAGTTAGTTCATGTTTAGTTCGTATGTATGCATGTCAATTCATGATTCAAATTATAACTTTTATTTTAAGGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCTTGCCCATGGAAGATTGGTCTCCTAACCAAGTTAGCCTAAATGGAAAACTTTTCTCCATTGAGTCTGAAATGTTTAGCAATATTTTAACAACATTTTCTGTCTACAATGAAGTTGATACAAGTAATGTACCTCTTCTCTTTTCCTTTATCCATTTTTATTTTACTTGAAACCAAAGTTATATATCTTGGTACATAGCTAAAACCCTTCCATCATTTGTCACAGTTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

mRNA sequence

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAATTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

Coding sequence (CDS)

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAATTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

Protein sequence

MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVEYSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFSAVPREEIIIREEVCFVKFV

Homology

[Close]

BLAST of CsaV3_2G012030 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_2G155090 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 9.7e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 AVPREEIIIREEVCFVKFV 140
           AVPREEIIIREEVCFVKFV
Sbjct: 121 AVPREEIIIREEVCFVKFV 139

[Close]

BLAST of CsaV3_2G012030 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_6G002310 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 108
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 107

[Close]

BLAST of CsaV3_2G012030 vs. NCBI nr
Match: KGN45908.1 (hypothetical protein Csa_6G020220 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 3.4e-16
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsaV3_2G012030 vs. NCBI nr
Match: XP_008464344.1 (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS   +   D   LKF+PS F +IA ++ P F A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N ++ +F+ PS  I     ++T 
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsaV3_2G012030 vs. NCBI nr
Match: XP_022156149.1 (uncharacterized protein LOC111023105 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 4.1e-14
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSI+V N+   L ATS  TE I DE+ +K +P  FSMIA ++   F  +L +P   F  
Sbjct: 7   MFSIRVGNIGLLLHATSQLTE-IADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTA 66

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSV   H SRIS+  F  ALL+  +  SM+IH+ +  N  + +FE S     +  ++ FS
Sbjct: 67  YSVLLTHTSRISIHAFHTALLDASTSPSMTIHIHDSINRFILRFENSSHQQEKRHELIFS 126

Query: 121 AVPREE 127
            +P ++
Sbjct: 127 LLPDQD 131

[Close]

BLAST of CsaV3_2G012030 vs. TrEMBL
Match: tr|A0A0A0LIE0|A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 6.4e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 AVPREEIIIREEVCFVKFV 140
           AVPREEIIIREEVCFVKFV
Sbjct: 121 AVPREEIIIREEVCFVKFV 139

[Close]

BLAST of CsaV3_2G012030 vs. TrEMBL
Match: tr|A0A0A0KB76|A0A0A0KB76_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.2e-31
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 108
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 107

[Close]

BLAST of CsaV3_2G012030 vs. TrEMBL
Match: tr|A0A0A0K902|A0A0A0K902_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.2e-16
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsaV3_2G012030 vs. TrEMBL
Match: tr|A0A1S3CL88|A0A1S3CL88_CUCME (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS   +   D   LKF+PS F +IA ++ P F A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N ++ +F+ PS  I     ++T 
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsaV3_2G012030 vs. TrEMBL
Match: tr|A0A1S4E4N8|A0A1S4E4N8_CUCME (uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +++ + DP  DATS   + I  E  +KF+P  FS+IA  + P F A L M H  F+ 
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQ-IAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFIN 62

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           Y VD +H SRISL  F +ALL+G +  SM+IHL      ++ +FE S        +++ +
Sbjct: 63  YKVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSHAPKVHHELSLT 122

Query: 121 AVPREEIIIREEVCFVKF 139
               E++    EV + KF
Sbjct: 123 PSQEEDL---GEVDYAKF 136

The following BLAST results are available for this feature:

BLAST of CsaV3_2G012030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61523.1	9.7e-72	100.00	hypothetical protein Csa_2G155090 [Cucumis sativus]	[more]
KGN45637.1	4.8e-31	66.36	hypothetical protein Csa_6G002310 [Cucumis sativus]	[more]
KGN45908.1	3.4e-16	38.58	hypothetical protein Csa_6G020220 [Cucumis sativus]	[more]
XP_008464344.1	4.4e-16	39.37	PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]	[more]
XP_022156149.1	4.1e-14	38.89	uncharacterized protein LOC111023105 [Momordica charantia]	[more]

BLAST of CsaV3_2G012030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G012030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G012030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIE0\|A0A0A0LIE0_CUCSA	6.4e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
tr\|A0A0A0KB76\|A0A0A0KB76_CUCSA	3.2e-31	66.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
tr\|A0A0A0K902\|A0A0A0K902_CUCSA	2.2e-16	38.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1	[more]
tr\|A0A1S3CL88\|A0A1S3CL88_CUCME	2.9e-16	39.37	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]
tr\|A0A1S4E4N8\|A0A1S4E4N8_CUCME	2.3e-13	36.96	uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G012030.1	CsaV3_2G012030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.70.10.10		coord: 1..138 e-value: 4.9E-11 score: 44.4
None	No IPR available	SUPERFAMILY	SSF55979	DNA clamp	coord: 1..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G012030	CsGy2G009760	Cucumber (Gy14) v2	cgybcucB064

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G012030	Cucumber (Gy14) v1	cgycucB309
CsaV3_2G012030	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G012030	Melon (DHL92) v3.5.1	cucmeB143
CsaV3_2G012030	Melon (DHL92) v3.6.1	cucmedB136