CsaV3_2G010050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G010050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 6733520 .. 6734064 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTGATTCATCCCCTTCAAGGCAAGAACCTAAAAACTTCCTTGCCTTGGTACAATTTGACCCAATTAGCCAAACTGAATTGCCTGGTCAAGAAGATTCAATTCAGAAGGAATTTCAAGACCCTCTAATTGATCTTAACGCGTCCAGTGATGATGCATTCATCAAGCAAAAAAATGGGGCAGATGGCCCAAACCTATTCTCAGAAAGGAATAAAGTTCCTGAGGAGGTAATTAATGATCCATACTTCACATGGAGAAAGAAATAATTGCAGAGGAAGCTGGGAGACACACCTTCCTTCCCTGCCTAGAGAAACTGTAGAAGGTTCAACGCAAAACGATAAGAGTAAAGAAGGAGTGAAGGAAGAGGACAAAGAAGTTGTTGATGAGGATTATATCTTCTATTTCATAAATCACCACGTATTCATTGGTCTAGTGCCAAAGAAATATTCAAGAAATGCATTTGCGAAGTGAAAAGCAGTTGAGTGACTTAGAACTTAAAGTAGACAACGCAAATGAAAAATCTGAGGCACGAATAGAATAA

mRNA sequence

ATGCAAATTGATTCATCCCCTTCAAGGCAAGAACCTAAAAACTTCCTTGCCTTGGTACAATTTGACCCAATTAGCCAAACTGAATTGCCTGGTCAAGAAGATTCAATTCAGAAGGAATTTCAAGACCCTCTAATTGATCTTAACGCGTCCAGTGATGATGCATTCATCAAGCAAAAAAATGGGGCAGATGGCCCAAACCTATTCTCAGAAAGGAATAAAGTTCCTGAGGAGTGCCAAAGAAATATTCAAGAAATGCATTTGCGAAGTGAAAAGCAGTTGAGTGACTTAGAACTTAAAGTAGACAACGCAAATGAAAAATCTGAGGCACGAATAGAATAA

Coding sequence (CDS)

ATGCAAATTGATTCATCCCCTTCAAGGCAAGAACCTAAAAACTTCCTTGCCTTGGTACAATTTGACCCAATTAGCCAAACTGAATTGCCTGGTCAAGAAGATTCAATTCAGAAGGAATTTCAAGACCCTCTAATTGATCTTAACGCGTCCAGTGATGATGCATTCATCAAGCAAAAAAATGGGGCAGATGGCCCAAACCTATTCTCAGAAAGGAATAAAGTTCCTGAGGAGTGCCAAAGAAATATTCAAGAAATGCATTTGCGAAGTGAAAAGCAGTTGAGTGACTTAGAACTTAAAGTAGACAACGCAAATGAAAAATCTGAGGCACGAATAGAATAA

Protein sequence

MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKNGADGPNLFSERNKVPEECQRNIQEMHLRSEKQLSDLELKVDNANEKSEARIE
Homology
[Close]
BLAST of CsaV3_2G010050 vs. NCBI nr
Match: KGN61308.1 (hypothetical protein Csa_2G079110 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 3.8e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN 60
          MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN
Sbjct: 1  MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN 60

Query: 61 GADGPNLFSERNKVPEE 78
          GADGPNLFSERNKVPEE
Sbjct: 61 GADGPNLFSERNKVPEE 77

[Close]
BLAST of CsaV3_2G010050 vs. TrEMBL
Match: tr|A0A0A0LHN2|A0A0A0LHN2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079110 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN 60
          MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN
Sbjct: 1  MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN 60

Query: 61 GADGPNLFSERNKVPEE 78
          GADGPNLFSERNKVPEE
Sbjct: 61 GADGPNLFSERNKVPEE 77

The following BLAST results are available for this feature:
BLAST of CsaV3_2G010050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61308.13.8e-34100.00hypothetical protein Csa_2G079110 [Cucumis sativus][more]
BLAST of CsaV3_2G010050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G010050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G010050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LHN2|A0A0A0LHN2_CUCSA2.5e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079110 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G010050.1CsaV3_2G010050.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 86..106

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G010050CSPI02G07640Wild cucumber (PI 183967)cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G010050Wax gourdcucwgoB146
CsaV3_2G010050Silver-seed gourdcarcucB0519
CsaV3_2G010050Cucumber (Gy14) v2cgybcucB064
CsaV3_2G010050Cucumber (Gy14) v1cgycucB287
CsaV3_2G010050Cucurbita maxima (Rimu)cmacucB0193
CsaV3_2G010050Cucurbita maxima (Rimu)cmacucB0928
CsaV3_2G010050Cucurbita moschata (Rifu)cmocucB0177
CsaV3_2G010050Cucurbita moschata (Rifu)cmocucB0920
CsaV3_2G010050Cucurbita moschata (Rifu)cmocucB0926
CsaV3_2G010050Cucurbita pepo (Zucchini)cpecucB0108
CsaV3_2G010050Cucurbita pepo (Zucchini)cpecucB1005
CsaV3_2G010050Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G010050Melon (DHL92) v3.5.1cucmeB138
CsaV3_2G010050Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G010050Melon (DHL92) v3.5.1cucmeB144
CsaV3_2G010050Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G010050Melon (DHL92) v3.6.1cucmedB131
CsaV3_2G010050Melon (DHL92) v3.6.1cucmedB137
CsaV3_2G010050Watermelon (Charleston Gray)cucwcgB119
CsaV3_2G010050Watermelon (97103) v1cucwmB167
CsaV3_2G010050Watermelon (97103) v2cucwmbB114