CsaV3_2G005160 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTTCGCCACCCCCAAACTTGGCCTCTTCCTCTGCAGTCTTGCCCATGGCTTCTTGCTTTTGGCGAGCTTAGTGCACTGTGATGGTTCACTCTCCCTCTTTCTCAATACACACACACACACACACACAAACACAAGAGCTTCGTAGTTCCTAGTTTTTGATGGGTTCTTCTGTGCATTGAGATGGCTCTCTCTGTCTATTTCTCTGCTTCTAAACACTCTTACACACATAGTTCCATAGTTCCATATCTTTGCAGGGTTCTTTTGTAATCTCACAATTATAATTCTCCCTTATCCATAGACGTTATTTCCCTTATTGCTGCCGCACAAAACCTCACACCCAATTATCCATCATTTGCAGTGAATGAAGACACACTTTTCAAAGCCATGAACAAGTACAGAAGTTCCAAAGAACTTACACCCATGCATAGGAACTCAAAAGCAGACTGCCTCGTCAAGCAAATTGCTTGGGACTTAGACGATCAGTCGCCCCTCAGCATCTTCACCAGCGGCTCCCCCATTATTCCAAGCAATTTAACCCAACTCCCCAATCTCCCGGACTACCTAACCAAGTGCAAAATCGAGCTCAACAACACGAGAAAAGGCTTGATTTTGCCCCTTCACATCCCCACGTTGGCGTTGAAACTTGTTCTTCATGGATGTACACATTCCCAGATGGACAATTACTTAAGCAAACCTGAATTCACGTCGATCGGAATTGGGTGTTATGAAGAATGGGCAGTTTTCGCTTTCGCCACCGATTCTCCCACCGGAAGCTTTAATTCTGCCGTGAAATTGTCTAAGTTGGGTCATCAGCATTTCTTCTTGGTGTCGTCCCTGTTGTTTGGGTTGTTTTTTCTTCTCTCCGGCTGA ATGGCCTTCGCCACCCCCAAACTTGGCCTCTTCCTCTGCAGTCTTGCCCATGGCTTCTTGCTTTTGGCGAGCTTAGTGCACTGTGATGACGTTATTTCCCTTATTGCTGCCGCACAAAACCTCACACCCAATTATCCATCATTTGCAGTGAATGAAGACACACTTTTCAAAGCCATGAACAAGTACAGAAGTTCCAAAGAACTTACACCCATGCATAGGAACTCAAAAGCAGACTGCCTCGTCAAGCAAATTGCTTGGGACTTAGACGATCAGTCGCCCCTCAGCATCTTCACCAGCGGCTCCCCCATTATTCCAAGCAATTTAACCCAACTCCCCAATCTCCCGGACTACCTAACCAAGTGCAAAATCGAGCTCAACAACACGAGAAAAGGCTTGATTTTGCCCCTTCACATCCCCACGTTGGCGTTGAAACTTGTTCTTCATGGATGTACACATTCCCAGATGGACAATTACTTAAGCAAACCTGAATTCACGTCGATCGGAATTGGGTGTTATGAAGAATGGGCAGTTTTCGCTTTCGCCACCGATTCTCCCACCGGAAGCTTTAATTCTGCCGTGAAATTGTCTAAGTTGGGTCATCAGCATTTCTTCTTGGTGTCGTCCCTGTTGTTTGGGTTGTTTTTTCTTCTCTCCGGCTGA ATGGCCTTCGCCACCCCCAAACTTGGCCTCTTCCTCTGCAGTCTTGCCCATGGCTTCTTGCTTTTGGCGAGCTTAGTGCACTGTGATGACGTTATTTCCCTTATTGCTGCCGCACAAAACCTCACACCCAATTATCCATCATTTGCAGTGAATGAAGACACACTTTTCAAAGCCATGAACAAGTACAGAAGTTCCAAAGAACTTACACCCATGCATAGGAACTCAAAAGCAGACTGCCTCGTCAAGCAAATTGCTTGGGACTTAGACGATCAGTCGCCCCTCAGCATCTTCACCAGCGGCTCCCCCATTATTCCAAGCAATTTAACCCAACTCCCCAATCTCCCGGACTACCTAACCAAGTGCAAAATCGAGCTCAACAACACGAGAAAAGGCTTGATTTTGCCCCTTCACATCCCCACGTTGGCGTTGAAACTTGTTCTTCATGGATGTACACATTCCCAGATGGACAATTACTTAAGCAAACCTGAATTCACGTCGATCGGAATTGGGTGTTATGAAGAATGGGCAGTTTTCGCTTTCGCCACCGATTCTCCCACCGGAAGCTTTAATTCTGCCGTGAAATTGTCTAAGTTGGGTCATCAGCATTTCTTCTTGGTGTCGTCCCTGTTGTTTGGGTTGTTTTTTCTTCTCTCCGGCTGA MAFATPKLGLFLCSLAHGFLLLASLVHCDDVISLIAAAQNLTPNYPSFAVNEDTLFKAMNKYRSSKELTPMHRNSKADCLVKQIAWDLDDQSPLSIFTSGSPIIPSNLTQLPNLPDYLTKCKIELNNTRKGLILPLHIPTLALKLVLHGCTHSQMDNYLSKPEFTSIGIGCYEEWAVFAFATDSPTGSFNSAVKLSKLGHQHFFLVSSLLFGLFFLLSG
BLAST of CsaV3_2G005160 vs. NCBI nr
Match: ABR67420.1 (GPI-anchored protein-like protein [Cucumis melo subsp. melo]) HSP 1 Score: 337.4 bits (864), Expect = 3.6e-89 Identity = 174/219 (79.45%), Postives = 180/219 (82.19%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. NCBI nr
Match: KGN60894.1 (hypothetical protein Csa_2G021650 [Cucumis sativus]) HSP 1 Score: 331.3 bits (848), Expect = 2.6e-87 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. NCBI nr
Match: XP_016901642.1 (PREDICTED: uncharacterized GPI-anchored protein At5g19250-like isoform X2 [Cucumis melo]) HSP 1 Score: 299.7 bits (766), Expect = 8.3e-78 Identity = 149/170 (87.65%), Postives = 154/170 (90.59%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. NCBI nr
Match: XP_022938133.1 (uncharacterized GPI-anchored protein At5g19250-like [Cucurbita moschata]) HSP 1 Score: 275.4 bits (703), Expect = 1.7e-70 Identity = 146/219 (66.67%), Postives = 166/219 (75.80%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. NCBI nr
Match: XP_022965902.1 (uncharacterized GPI-anchored protein At5g19250-like isoform X3 [Cucurbita maxima]) HSP 1 Score: 274.6 bits (701), Expect = 2.9e-70 Identity = 147/219 (67.12%), Postives = 165/219 (75.34%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. TAIR10
Match: AT1G54860.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 105.5 bits (262), Expect = 4.2e-23 Identity = 55/147 (37.41%), Postives = 82/147 (55.78%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. TAIR10
Match: AT5G19250.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 102.1 bits (253), Expect = 4.6e-22 Identity = 63/167 (37.72%), Postives = 83/167 (49.70%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. TAIR10
Match: AT3G06035.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 97.4 bits (241), Expect = 1.1e-20 Identity = 56/167 (33.53%), Postives = 88/167 (52.69%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. TAIR10
Match: AT5G19240.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14 Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. Swiss-Prot
Match: sp|P59833|UGPI3_ARATH (Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana OX=3702 GN=At5g19250 PE=2 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 8.3e-21 Identity = 63/167 (37.72%), Postives = 83/167 (49.70%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. Swiss-Prot
Match: sp|Q84MC0|UGPI4_ARATH (Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana OX=3702 GN=At3g06035 PE=2 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 2.0e-19 Identity = 56/167 (33.53%), Postives = 88/167 (52.69%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. Swiss-Prot
Match: sp|Q84VZ5|UGPI2_ARATH (Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana OX=3702 GN=At5g19240 PE=2 SV=2) HSP 1 Score: 77.0 bits (188), Expect = 2.9e-13 Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. TrEMBL
Match: tr|A6YTC6|A6YTC6_CUCME (GPI-anchored protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 337.4 bits (864), Expect = 2.4e-89 Identity = 174/219 (79.45%), Postives = 180/219 (82.19%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. TrEMBL
Match: tr|A0A0A0LIM2|A0A0A0LIM2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021650 PE=4 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 1.7e-87 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. TrEMBL
Match: tr|A0A1S4E078|A0A1S4E078_CUCME (uncharacterized GPI-anchored protein At5g19250-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495110 PE=4 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 5.5e-78 Identity = 149/170 (87.65%), Postives = 154/170 (90.59%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. TrEMBL
Match: tr|A0A2I4GD00|A0A2I4GD00_9ROSI (uncharacterized GPI-anchored protein At5g19250-like OS=Juglans regia OX=51240 GN=LOC109006826 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 8.9e-28 Identity = 79/217 (36.41%), Postives = 117/217 (53.92%), Query Frame = 0
BLAST of CsaV3_2G005160 vs. TrEMBL
Match: tr|W9S359|W9S359_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002452 PE=4 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 5.8e-27 Identity = 77/211 (36.49%), Postives = 115/211 (54.50%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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