CsaV3_1G040630 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G040630
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 25862311 .. 25863152 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATGGAAGATAAGGAAGAACCTGAAGGTTAAAGAATGAGTTGAGGAAGAAACTTGTGGGATGAGAGAATCAGATCCTGAAAGGTGAAGTGGAATTTGATTGAGCGCTTGAAAATTGGACAAGTGAGGTTGCGAGTGCGACGGAAATGGCTATTAGGGTTATTTAAAAGTCCATTTTTTTTCTCTCTTTTTCCTGCTTCGATCGATCAAATTCTTCGTTGGAGATGACGATGGGCTTTCGTGAATTGCGAGGCGGGCTTTTGGGCCTTCATCTTTCCCCCCTTTACCACTCCGTAAATTTTAGGGTTTTTCCATTCTAAAATTGTAAAAATGTCTTTCGTAATTCCTCATTTGTTTTCTGTTTTTTGTTTTAAGACTAATTTTAAAAAACGAATGTAAACAATAATTAATACAATTTTTGGTCAATTAAATTAGAAATAGTTAAAAATAAAATAAACCATTTTTTAAAAAAACATTTTGTTTTTAAAAAACAGAAAGCAAAATCAACAAACATACATTATTTTTGTTTTTCGTTTTTAAAATTAAATGTTACATTATAATAATTTTATTATTATTGTTTTTCTTAAACAGAACGTCATGTCGTTTGTTACTTGCCGATTGCTATTCGTCGTTCACCACAAAACGACGACACCGCTCTACTAACAGCGTCGGCTTCACAATTCAGGCAGTTGCTTCACGAAGTTTCTCCGGGGAGCCATCAAAGGCCGTTATCCGATTTTCCGGCGTCATTTTCTGGCAGTCACGCCGCCGCAACTGAGCTGACAGCTTCACTATTGTCGTTTGAAGCAAATATCGAGCGACTGAAAATTGAGCTGTAG

mRNA sequence

ATGAATATGGAAGATAAGGAAGAACCTGAAGAACGTCATGTCGTTTGTTACTTGCCGATTGCTATTCGTCGTTCACCACAAAACGACGACACCGCTCTACTAACAGCGTCGGCTTCACAATTCAGGCAGTTGCTTCACGAAGTTTCTCCGGGGAGCCATCAAAGGCCGTTATCCGATTTTCCGGCGTCATTTTCTGGCAGTCACGCCGCCGCAACTGAGCTGACAGCTTCACTATTGTCGTTTGAAGCAAATATCGAGCGACTGAAAATTGAGCTGTAG

Coding sequence (CDS)

ATGAATATGGAAGATAAGGAAGAACCTGAAGAACGTCATGTCGTTTGTTACTTGCCGATTGCTATTCGTCGTTCACCACAAAACGACGACACCGCTCTACTAACAGCGTCGGCTTCACAATTCAGGCAGTTGCTTCACGAAGTTTCTCCGGGGAGCCATCAAAGGCCGTTATCCGATTTTCCGGCGTCATTTTCTGGCAGTCACGCCGCCGCAACTGAGCTGACAGCTTCACTATTGTCGTTTGAAGCAAATATCGAGCGACTGAAAATTGAGCTGTAG

Protein sequence

MNMEDKEEPEERHVVCYLPIAIRRSPQNDDTALLTASASQFRQLLHEVSPGSHQRPLSDFPASFSGSHAAATELTASLLSFEANIERLKIEL
Homology
[Close]
BLAST of CsaV3_1G040630 vs. NCBI nr
Match: KGN66261.1 (hypothetical protein Csa_1G589680 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 1.8e-42
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MNMEDKEEPEERHVVCYLPIAIRRSPQNDDTALLTASASQFRQLLHEVSPGSHQRPLSDF 60
          MNMEDKEEPEERHVVCYLPIAIRRSPQNDDTALLTASASQFRQLLHEVSPGSHQRPLSDF
Sbjct: 1  MNMEDKEEPEERHVVCYLPIAIRRSPQNDDTALLTASASQFRQLLHEVSPGSHQRPLSDF 60

Query: 61 PASFSGSHAAATELTASLLSFEANIERLKIEL 93
          PASFSGSHAAATELTASLLSFEANIERLKIEL
Sbjct: 61 PASFSGSHAAATELTASLLSFEANIERLKIEL 92

[Close]
BLAST of CsaV3_1G040630 vs. TrEMBL
Match: tr|A0A0A0M209|A0A0A0M209_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G589680 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-42
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MNMEDKEEPEERHVVCYLPIAIRRSPQNDDTALLTASASQFRQLLHEVSPGSHQRPLSDF 60
          MNMEDKEEPEERHVVCYLPIAIRRSPQNDDTALLTASASQFRQLLHEVSPGSHQRPLSDF
Sbjct: 1  MNMEDKEEPEERHVVCYLPIAIRRSPQNDDTALLTASASQFRQLLHEVSPGSHQRPLSDF 60

Query: 61 PASFSGSHAAATELTASLLSFEANIERLKIEL 93
          PASFSGSHAAATELTASLLSFEANIERLKIEL
Sbjct: 61 PASFSGSHAAATELTASLLSFEANIERLKIEL 92

The following BLAST results are available for this feature:
BLAST of CsaV3_1G040630 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66261.11.8e-42100.00hypothetical protein Csa_1G589680 [Cucumis sativus][more]
BLAST of CsaV3_1G040630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G040630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G040630 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M209|A0A0A0M209_CUCSA1.2e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G589680 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G040630.1CsaV3_1G040630.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G040630CSPI01G28340Wild cucumber (PI 183967)cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G040630Cucumber (Gy14) v2cgybcucB001
CsaV3_1G040630Cucumber (Gy14) v2cgybcucB060
CsaV3_1G040630Cucumber (Gy14) v2cgybcucB162
CsaV3_1G040630Cucumber (Gy14) v2cgybcucB315
CsaV3_1G040630Cucumber (Gy14) v1cgycucB154
CsaV3_1G040630Cucumber (Gy14) v1cgycucB234
CsaV3_1G040630Cucumber (Gy14) v1cgycucB545
CsaV3_1G040630Cucurbita maxima (Rimu)cmacucB0059
CsaV3_1G040630Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G040630Cucurbita maxima (Rimu)cmacucB0183
CsaV3_1G040630Cucurbita maxima (Rimu)cmacucB0416
CsaV3_1G040630Cucurbita maxima (Rimu)cmacucB0520
CsaV3_1G040630Cucurbita maxima (Rimu)cmacucB0920
CsaV3_1G040630Cucurbita maxima (Rimu)cmacucB1041
CsaV3_1G040630Cucurbita moschata (Rifu)cmocucB0045
CsaV3_1G040630Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G040630Cucurbita moschata (Rifu)cmocucB0168
CsaV3_1G040630Cucurbita moschata (Rifu)cmocucB0411
CsaV3_1G040630Cucurbita moschata (Rifu)cmocucB0507
CsaV3_1G040630Cucurbita moschata (Rifu)cmocucB1024
CsaV3_1G040630Cucurbita pepo (Zucchini)cpecucB0143
CsaV3_1G040630Cucurbita pepo (Zucchini)cpecucB0443
CsaV3_1G040630Cucurbita pepo (Zucchini)cpecucB0661
CsaV3_1G040630Cucurbita pepo (Zucchini)cpecucB0663
CsaV3_1G040630Cucurbita pepo (Zucchini)cpecucB0813
CsaV3_1G040630Cucurbita pepo (Zucchini)cpecucB0997
CsaV3_1G040630Wild cucumber (PI 183967)cpicucB075
CsaV3_1G040630Wild cucumber (PI 183967)cpicucB199
CsaV3_1G040630Wild cucumber (PI 183967)cpicucB381
CsaV3_1G040630Bottle gourd (USVL1VR-Ls)cuclsiB062
CsaV3_1G040630Bottle gourd (USVL1VR-Ls)cuclsiB011
CsaV3_1G040630Bottle gourd (USVL1VR-Ls)cuclsiB038
CsaV3_1G040630Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G040630Melon (DHL92) v3.5.1cucmeB038
CsaV3_1G040630Melon (DHL92) v3.5.1cucmeB042
CsaV3_1G040630Melon (DHL92) v3.5.1cucmeB073
CsaV3_1G040630Melon (DHL92) v3.5.1cucmeB087
CsaV3_1G040630Melon (DHL92) v3.6.1cucmedB035
CsaV3_1G040630Melon (DHL92) v3.6.1cucmedB039
CsaV3_1G040630Melon (DHL92) v3.6.1cucmedB068
CsaV3_1G040630Melon (DHL92) v3.6.1cucmedB082
CsaV3_1G040630Watermelon (Charleston Gray)cucwcgB010
CsaV3_1G040630Watermelon (Charleston Gray)cucwcgB050
CsaV3_1G040630Watermelon (Charleston Gray)cucwcgB068
CsaV3_1G040630Watermelon (Charleston Gray)cucwcgB094
CsaV3_1G040630Watermelon (97103) v1cucwmB001
CsaV3_1G040630Watermelon (97103) v1cucwmB025
CsaV3_1G040630Watermelon (97103) v1cucwmB039
CsaV3_1G040630Watermelon (97103) v1cucwmB042
CsaV3_1G040630Watermelon (97103) v1cucwmB083
CsaV3_1G040630Watermelon (97103) v2cucwmbB020
CsaV3_1G040630Watermelon (97103) v2cucwmbB041
CsaV3_1G040630Watermelon (97103) v2cucwmbB057
CsaV3_1G040630Watermelon (97103) v2cucwmbB090
CsaV3_1G040630Wax gourdcucwgoB005
CsaV3_1G040630Wax gourdcucwgoB082
CsaV3_1G040630Wax gourdcucwgoB083
CsaV3_1G040630Wax gourdcucwgoB102
CsaV3_1G040630Cucumber (Chinese Long) v3cuccucB011
CsaV3_1G040630Cucumber (Chinese Long) v3cuccucB027
CsaV3_1G040630Cucumber (Chinese Long) v3cuccucB058
CsaV3_1G040630Silver-seed gourdcarcucB0109
CsaV3_1G040630Silver-seed gourdcarcucB0604
CsaV3_1G040630Silver-seed gourdcarcucB0634
CsaV3_1G040630Silver-seed gourdcarcucB0925
CsaV3_1G040630Silver-seed gourdcarcucB0932