CsaV3_1G038930 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G038930
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Beta-galactosidase
Location	chr1 : 24516146 .. 24516650 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAACCAAGCATAATTGTAATTTCAAAGATGCTTAACCATCAATGGCTTGTTTTTTCTCTCGTTGTAACTTTAGCTTGTTTTTATTTTTGTAAAGGAGACAATGTCTCTTATGATTCAAATGCAATAATTATCAATGGCGAACGACGTGTGATTTTGTCAGGTTCAATGCATTATCCACGCAGCACTGAAGCAATGTGGCCTGATCTTATTCAAAAAGCTAAAGATGGTGGACTTGATGCAATAGAGACATACATTTTTTGGGATCGTCATGAACCTCAACGACGAAAATATGATTTCACTGGACGACTAGATTTTATCAAATTTTTTCAACTTGTTCAAGATGCTGGATTATATGTCGTGATGAGGATTGGTCCGTATGTGTGTGCAGAATGGAACTACGGAGGCTTTCCATTGTGGTTGCATAATTTGCCAGGAATCCAATTTCGAACGGACAATCAAGTCTACAAGAATGAAATGCAAACTTTTACAACAAAGATAG

mRNA sequence

ATGAATAAACCAAGCATAATTGTAATTTCAAAGATGCTTAACCATCAATGGCTTGTTTTTTCTCTCGTTGTAACTTTAGCTTGTTTTTATTTTTGTAAAGGAGACAATGTCTCTTATGATTCAAATGCAATAATTATCAATGGCGAACGACGTGTGATTTTGTCAGGATTGGTCCGTATGTGTGTGCAGAATGGAACTACGGAGGCTTTCCATTGTGGTTGCATAATTTGCCAGGAATCCAATTTCGAACGGACAATCAAGTCTACAAGAATGAAATGCAAACTTTTACAACAAAGATAG

Coding sequence (CDS)

ATGAATAAACCAAGCATAATTGTAATTTCAAAGATGCTTAACCATCAATGGCTTGTTTTTTCTCTCGTTGTAACTTTAGCTTGTTTTTATTTTTGTAAAGGAGACAATGTCTCTTATGATTCAAATGCAATAATTATCAATGGCGAACGACGTGTGATTTTGTCAGGATTGGTCCGTATGTGTGTGCAGAATGGAACTACGGAGGCTTTCCATTGTGGTTGCATAATTTGCCAGGAATCCAATTTCGAACGGACAATCAAGTCTACAAGAATGAAATGCAAACTTTTACAACAAAGATAG

Protein sequence

MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRMCVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR

Homology

[Close]

BLAST of CsaV3_1G038930 vs. NCBI nr
Match: KGN66078.1 (hypothetical protein Csa_1G569540 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 9.7e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM 60
           MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM
Sbjct: 1   MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM 60

Query: 61  CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR 100
           CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR
Sbjct: 61  CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR 99

[Close]

BLAST of CsaV3_1G038930 vs. NCBI nr
Match: XP_004135782.2 (PREDICTED: beta-galactosidase 15-like [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 7.7e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSG 57
          MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSG
Sbjct: 1  MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSG 56

[Close]

BLAST of CsaV3_1G038930 vs. NCBI nr
Match: XP_008444022.1 (PREDICTED: beta-galactosidase-like [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 12 MLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          M N QW V  +V TLACF FC GDN+SYDSNAIIINGERR+I SG +
Sbjct: 1  MFNFQWHVLIVVATLACFSFCIGDNISYDSNAIIINGERRLIFSGSI 47

[Close]

BLAST of CsaV3_1G038930 vs. NCBI nr
Match: XP_008447673.1 (PREDICTED: beta-galactosidase 15-like [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 8.3e-09
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 16 QWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          QWLV  L+VTLAC   C GDNVSYDSNAIIINGERR+I SG +
Sbjct: 6  QWLVLHLIVTLACLSCCIGDNVSYDSNAIIINGERRIIFSGSI 48

[Close]

BLAST of CsaV3_1G038930 vs. NCBI nr
Match: KGN58141.1 (hypothetical protein Csa_3G550690 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 16 QWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          QWL+  L  TLAC  FC G+NVSYDSNAIIINGERR+I SG +
Sbjct: 6  QWLLLDLAATLACLSFCIGNNVSYDSNAIIINGERRIIFSGSI 48

[Close]

BLAST of CsaV3_1G038930 vs. TrEMBL
Match: tr|A0A0A0LWF5|A0A0A0LWF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569540 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.4e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM 60
           MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM
Sbjct: 1   MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM 60

Query: 61  CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR 100
           CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR
Sbjct: 61  CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR 99

[Close]

BLAST of CsaV3_1G038930 vs. TrEMBL
Match: tr|A0A1S3BA81|A0A1S3BA81_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103487469 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.5e-10
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 12 MLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          M N QW V  +V TLACF FC GDN+SYDSNAIIINGERR+I SG +
Sbjct: 1  MFNFQWHVLIVVATLACFSFCIGDNISYDSNAIIINGERRLIFSGSI 47

[Close]

BLAST of CsaV3_1G038930 vs. TrEMBL
Match: tr|A0A1S3BIK7|A0A1S3BIK7_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103490083 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 16 QWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          QWLV  L+VTLAC   C GDNVSYDSNAIIINGERR+I SG +
Sbjct: 6  QWLVLHLIVTLACLSCCIGDNVSYDSNAIIINGERRIIFSGSI 48

[Close]

BLAST of CsaV3_1G038930 vs. TrEMBL
Match: tr|A0A0A0LDH9|A0A0A0LDH9_CUCSA (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_3G550690 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 16 QWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          QWL+  L  TLAC  FC G+NVSYDSNAIIINGERR+I SG +
Sbjct: 6  QWLLLDLAATLACLSFCIGNNVSYDSNAIIINGERRIIFSGSI 48

[Close]

BLAST of CsaV3_1G038930 vs. TrEMBL
Match: tr|A0A1S3C8Z9|A0A1S3C8Z9_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103498345 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 12 MLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          M N  W V  L+  LAC  FC G+NV+YDSNAIIINGERR+ILSG +
Sbjct: 1  MFNLHWSVLLLIAALACSSFCTGENVTYDSNAIIINGERRIILSGSI 47

The following BLAST results are available for this feature:

BLAST of CsaV3_1G038930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66078.1	9.7e-50	100.00	hypothetical protein Csa_1G569540 [Cucumis sativus]	[more]
XP_004135782.2	7.7e-23	100.00	PREDICTED: beta-galactosidase 15-like [Cucumis sativus]	[more]
XP_008444022.1	1.3e-09	70.21	PREDICTED: beta-galactosidase-like [Cucumis melo]	[more]
XP_008447673.1	8.3e-09	74.42	PREDICTED: beta-galactosidase 15-like [Cucumis melo]	[more]
KGN58141.1	4.1e-08	69.77	hypothetical protein Csa_3G550690 [Cucumis sativus]	[more]

BLAST of CsaV3_1G038930 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G038930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G038930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWF5\|A0A0A0LWF5_CUCSA	6.4e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569540 PE=4 SV=1	[more]
tr\|A0A1S3BA81\|A0A1S3BA81_CUCME	8.5e-10	70.21	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103487469 PE=3 SV=1	[more]
tr\|A0A1S3BIK7\|A0A1S3BIK7_CUCME	5.5e-09	74.42	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103490083 PE=3 SV=1	[more]
tr\|A0A0A0LDH9\|A0A0A0LDH9_CUCSA	2.7e-08	69.77	Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_3G550690 PE=3 SV=1	[more]
tr\|A0A1S3C8Z9\|A0A1S3C8Z9_CUCME	4.6e-08	63.83	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103498345 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G038930.1	CsaV3_1G038930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..28 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G038930	Silver-seed gourd	carcucB0276
CsaV3_1G038930	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G038930	Cucumber (Gy14) v1	cgycucB293
CsaV3_1G038930	Cucurbita maxima (Rimu)	cmacucB0069
CsaV3_1G038930	Cucurbita maxima (Rimu)	cmacucB0114
CsaV3_1G038930	Cucurbita maxima (Rimu)	cmacucB0184
CsaV3_1G038930	Cucurbita maxima (Rimu)	cmacucB0922
CsaV3_1G038930	Cucurbita moschata (Rifu)	cmocucB0062
CsaV3_1G038930	Cucurbita moschata (Rifu)	cmocucB0102
CsaV3_1G038930	Cucurbita moschata (Rifu)	cmocucB0169
CsaV3_1G038930	Cucurbita moschata (Rifu)	cmocucB0914
CsaV3_1G038930	Cucurbita pepo (Zucchini)	cpecucB0100
CsaV3_1G038930	Cucurbita pepo (Zucchini)	cpecucB0432
CsaV3_1G038930	Cucurbita pepo (Zucchini)	cpecucB0817
CsaV3_1G038930	Cucurbita pepo (Zucchini)	cpecucB0998
CsaV3_1G038930	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G038930	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G038930	Melon (DHL92) v3.5.1	cucmeB042
CsaV3_1G038930	Melon (DHL92) v3.6.1	cucmedB039
CsaV3_1G038930	Watermelon (Charleston Gray)	cucwcgB050
CsaV3_1G038930	Watermelon (97103) v1	cucwmB025
CsaV3_1G038930	Watermelon (97103) v2	cucwmbB041
CsaV3_1G038930	Wax gourd	cucwgoB090
CsaV3_1G038930	Wax gourd	cucwgoB116