CsaV3_1G037380.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G037380.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	30-kDa cleavage and polyadenylation specificity factor 30
Location	chr1 : 23280122 .. 23285946 (-)
Sequence length	1575

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGCGATGCTTGTGGATTCCTTCACCAGTATGATAATTCTCGGATGCCCATTTGCCGCTTCTTTCGTCTTTATGGTGAGTGTCGGGAGCAGGATTGCGTGTATAAACATACCAATGAAGATATAAAAGAGTGTAATATGTACGTTTTGGAATTTGGAATTCGATTTGTGTCTTGAATTTAGTAGTTGTTCGTCATATTTACATTTTTGGTTGTTTAATTTTCTTGTATTATTCTTTTATTAGGGGGTGATCAATATATGCTTTCATAGTTTATCTCCCTTTTCTTTGTTCCTAGTAGTTGAATTTATTAGTATCATATGCAGTTCATGGATTACATACTGGGTAATTTCTTTTCATTTCTTTTCATTTTGTTTTTAAATAAGAGGAGACAATTCTTTAATACATGAAAAATCATGAACAAAATTTACTTTCTTCCATTAGGAGTACACAAAAGAGCATCAAAATTGCAAGCGAGTCATTAGACAAACTCTAATTGCACCATGAAGAGAAACTTATCCAAACAAGAAGCGTCCTTTGATCTCTTTCCTTTCTTTGTTATGCTAAAATATCATTTTTAACCATAAAAATCTATAAGATGGCCTTAGCTGCGTAATTCCAACGAGTTTTAAGTCATTTCTTTAAAGTTTTTGCCACTCAACAAGTGTCATTATACTTGTAGTTGAACCATTGTGGACGTATTAAACTATTTCTTACCCAAGGAAAGAAGACCTAAAAGAGAGAGAAAATAATGAAATAGAGTAGTATCCTTTGTCTCTGCTATACGAGCAAAGTAGTAGTAGGTAGTGTTGGGACTTGTTTGAACCTATACTTCTTCCCTTGGGTTTCCCCTCTATCAATGAAATTAATGATTCCCCAAGGATTTCTTCAATCTTTTAGTTTAAGCACGCGTACAGCTTTTGTAAGGTTGATGATATCGTTAGATATATTTATGGTGCTAGAAATTGAGGAATCCTCATTCAGGCTTTTGCGAAATGATTCCCTAGTTTTACTTAGACAAATTGTTTTGCAACAATATGATCTTTTTTTGGTTAAGATGTGCAATGACAGAATCTTGTAAATTAATTTCTACAGTACATCTTTTTGGACAAATTTTTGTTCGCTTGCAATCAATTGATGTTCTTTGTCTAAAGGCTAAACACTGGAACTGCAGGTACAAGTTTGGTTTCTGTCCAAATGGTTCTGATTGTCGATATAGGCATGCAAAGCTACCTGGACCCCCACCTTCCGTGGAAGAAATCCTTCAGAAAATACAGCACTTAGGTTCATACAATTATGGCTCCTCAAACAAATTCTTTTCACAGCGTGGAGTTGGTTTGCCCCAACAGAATGAAAAATCTCAGTTTCCTCAGGGTCCGGCCCCTGTTACTCAAGGAGGGATTGGAAAACCTTCTACAACAGAATCTGCTAATGTCCAACAACAGCAAGTTCAACAACCTGCACAACAAACCAGCCAGACTCAGATACGAAGTGTTTCTAATGGCCAGCCTAATCAGTTAAACAGAACTGCAACATCTTTGCCTCAAGGAATATCTAGGTGTGTCTGAAGAGACCTGAAGTAATTTTTCATGTTACTTTAACTTAACTTTTGTATCATATGGAAACAGTGTTGCAGAGATATGTTATTTTACCTTCCTTGTTCATATCATAATTGTGCTTTCACATACTTTATGCCCCATTAGTCAAAAATATTTTTCTTCATATCAATTTGTAGTCCTTGGAACACAAGAATCTTTAGTTAGAATGAGATTCCTACTCAGTATCTTTTGAGATTTTGAGCAGAGTTCCTCCTTTGGTGAGCACAATACAAGCTGCCTCTTGGGCCTGGTGAATGGTATTGTCTTTCTTTCTTTCTTTGTTTTTTTTTTAACGATCAGAAAACTTGCTTTCAGTGAGAAGAAATGAAACAATACGGAAGGGCCTGAATGGTGTCATCTTAAGGTATTAGTTATTTTACACATTCTTCTTCAAGCTATTAAACTTTATGCCAAAGCTTCGTTACAATATGCTTATGCTTCATTTCATTAGTACCTCATGTCAATTATCAAGTGTCATGTAACTAGTTTTTGCCTACATATTTATGGCACTGTTATTGATTGGCTAGAATCTGTTGACTCGAAGTTCATACTCTGTCATGTTAGGGTCTCTTTTAATCTGTGGACTGGGACTTCATAAATACTTTTTTTGATTTAGTTTGCTTTAATATTTGAAGTTGATGGAGTCTCTCCAGCTTCTATGACTATACTCCCTTTGTCACTTATGCCAAGTACTGGAACTGTTTTCTGTAAAACTCAATCAGCAAGGGGTACCCTTTTTTGGTTCTGTAACCTTTCCCATTCATCTTCCGATAAAGACATGGCTACTCTTTTGTAATATAATTCTGCGAAGCAAATGAAAAAAAGAATTGACTTTCACATGAACCTTTTAAATACTCTAAATGACCTAATTTATTTTTGAAAGATTAGGTACTTTATTGTTAAAAGTTGCAACCGTGAGAATTTGGAGTTCTGTACAACAAGAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAACCGGACTCGACATTTTCAGGTGCTAACCATTCCCTGTGATGCTACTTGGTCATTGATGAACATAGTATGTTTGTTTGAGATAATTATACTGATCTGCTATTGGCTGCTTAGGGTTGTGCAAATATGATGTCCAGGATTGGTGGTTCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTGCACATTATGGTAAAAAAATTTCACTCAAATGGCTTAAGGTTGATATTTCATTTCTTAGATTTATAATTTTATGTAGAAATTTATATAACATTTGTACCTCATCATGCTGTTGCATTGTTGTTAGTTGCAATAATGCTAATGGTTGTTTGCACTCTCAGTCCCTCTAGAACGTCTAATTTACTCTCAGAGTTCATCAACGTAGTGCTCATTAAAATTTAAACTGAATTATTCTTTTTTAATATGTGATAATGAACAGTTTTTCTTTTTCCCATCATTAAAAGATGTATGAAAAAATCAATGGTTCACTGTATCCTAGAAGTAGGAAGAAAACTTGAACAATTTTTCAATCTAAATCCGAAACCCTAGACAAAGTTTTTAAAACTTGATCAAGCTATTTCCAGTATTAATTGGTCTATGAGTTCATTATAATTATTTGATATTCTTATCTAGGATAAATAACAGATTACATTAAAGAAACATTATGAATATATTTGTTTCTTCCCATGGGAGAGTGCATCATACTTCTTGGAGCATTCAATTTTGCTCTCTTTTTTTGTCTTTTTCCCTTTTTAGTTAAAGAAAATATGTACAGTGAAGAATTATGATATGAATTTTTTATGACATCTGGAATCTTGCTAAATTTTCAATTTGACAGATCCACGTTCAAGCTCAAAGTTCAAATTAAATTATGTTATGAAAGATGATTTTGTTCCAACCAATTTGAGTCCTGTATGATGCGTGAATAATTTGACTTTGTTACTTGCAGTTATGTGAACTATCCTTCCAGAAAACACGCCATTTGAGGAATACATATAATGAAAACTTACCCGTAAAGGTATAGTATCTCAAATTTGATGAAGAAAGATTTCTATTTATATTTACATCTGCTGATGTTATGTTGTGTTGTGTTTTTTTCCCCTCACGCTTCTTCGTTTACTGTCGTGAACTTTTGAAAAGATTTTTTACTTCTTTTTTTGTGTGTTTATGATTATTGATTATCATATTGTTATGTACTTTCTGGTGATAATACATTTTACCGGTTTTGTTGAAGTCAAATTATCTGAAAACATACTGAAGAACTTTCAATCTTATCACTTTTGGATGAGTCTTTTTTTTGGTTTGGGAGGGGGGGTCGCTAGAAATTTAACTCCGATCTTTGTTTTACTTATCTTCCCGTAATCATCTCACTTCGAGTACTTACATGGTTGATTCAATTATGAGGGATTGCAATCCCGTTTGACCTCGCTCTCACTCTTCAACTTGAGAGCATGATATTTTTCAATTATGAGAAAAGCACAGTAGGTTGTCCTATAACAGAAATTGACTAACATTTGACTGTCAGAACCGTTACAAGTAATGCGAGCCTTTTCCTAATAAACTAACCACCACTTCACGAATTCTTTCATTGACTGCAATTTGAAAGGTTGGCCCAAACATGACAAGGTAAAAGTTGGATCCAACAGAAACATGAAAGACGGCCAATGGAGTCTTGAAATTTTTCTCTGTTCATTGGTATTGTCATATTGATTAAAGTTATTGATTGAAGTAACCGAGTTTGCCTGTTAGCCCCTGAAAAGCTAGGATAACTGCATTTCACCTAGATTTAATGGAAGGAAAGGGACCAAGTTGTTTGCTGGAGAGTAGCCAGCCTAATCGTTCTAATTAATAAAGAAGACTTTTTTAGACAAATAAATTGATATTTAGAAGGATTAGGAAATACAGCAAAAGGCCAGGATCTTTTGTTGTATAGTGGCATTTGATATAAGTTTTTTTGAGAGCAAACGAGATAATTTTCTGGAACATTGTTAATGTTGATTGTGTATCACACAAGGATGGCTTCACTATGCTTCAACTTTGATTGAGTTGAAAGCCATCCTGTTTATGCTGTAGAATCTTCCAATTGCACCCTGTTTTTGTTCATTTGGCATGAAACCGCTCATTGTCTTGTTTTGTTACCTGCCTACCATTCACATGTACGTGGAGGATGATTGTTCTAAGAGATGATATTTTGTCCTTCATATCTTGTTCTGCAATCAGTGTTAGTATTGGGTACTAATTGAGCCATCATTTTTTTCGTACTTCTTACAAGTGCAGATCAGTAGAGATTGCCAAGAGCTAGAGCCCTCTATTGGTGAGCAGCTGGCTTCTTTGCTTTATCTCGAGCCAGATGGTGAACTCATGGTATGCTTTATTTGTTCATTTTGTTCAAAACAGAAAACTTTGAAATACATTCCCCCTAGTACAAAATAAGGATTACATATGCAAGCAGGAGACGAAGGAAATGGAATTTGAGGAAATGGATTATGGCAGTTTCTGGATTTATTATTGTGTAATGGTGTGGGATAGCTCTTACTGGATTACTCAAGTGTTGTTTTCTTATTTTTGTGATCAGGCTGTCTCAATAGCAGCAGAATCGAAACGGAAAGACGAGAAAGCAAAGGGAGTTAATCCTGATATTGGAAATGAGAACCCAGATATCGTCCTGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAGAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCTGTTGGTCTACCATCGCAGGGCAGAGGGAGGGGCAGGGGAATCATGTGGACCCCACATATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAAAGTTTTCCACCTGGGATGATGGGTCCGGATGGTTTGTCTTATGGGCCTGTTACGGCCGATGGATTTCCCGTGCCTGACATTTTTGGTATGGCTCCTTGTGGTTTTGGTCCATATGGTCCTAGGTTTTCCGGTGATTTCATGGGTCCCTCATCTGCTATGATGTTTCGCGGACGACCTTCTCAACCTGGGGCCATGTTCACCCCTGGTGAGTTTGGGATGATGATGGGACAAGGACGTGGTCCCTTTATGGGTGGGATGGGAGTTACTGGTACTAGCCCAGCTCGACCTGGTCGTCCTGTGGGTGTTTCTCCATTGTATCCACCTCCAACAGGACCCTCAGCTCAGAACATCAATTGA

mRNA sequence

ATGAAGGGCGATGCTTGTGGATTCCTTCACCAGTATGATAATTCTCGGATGCCCATTTGCCGCTTCTTTCGTCTTTATGGTGAGTGTCGGGAGCAGGATTGCGTGTATAAACATACCAATGAAGATATAAAAGAGTGTAATATGTACAAGTTTGGTTTCTGTCCAAATGGTTCTGATTGTCGATATAGGCATGCAAAGCTACCTGGACCCCCACCTTCCGTGGAAGAAATCCTTCAGAAAATACAGCACTTAGGTTCATACAATTATGGCTCCTCAAACAAATTCTTTTCACAGCGTGGAGTTGGTTTGCCCCAACAGAATGAAAAATCTCAGTTTCCTCAGGGTCCGGCCCCTGTTACTCAAGGAGGGATTGGAAAACCTTCTACAACAGAATCTGCTAATGTCCAACAACAGCAAGTTCAACAACCTGCACAACAAACCAGCCAGACTCAGATACGAAGTGTTTCTAATGGCCAGCCTAATCAGTTAAACAGAACTGCAACATCTTTGCCTCAAGGAATATCTAGGTACTTTATTGTTAAAAGTTGCAACCGTGAGAATTTGGAGTTCTGTACAACAAGAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAACCGGACTCGACATTTTCAGGGTTGTGCAAATATGATGTCCAGGATTGGTGGTTCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTGCACATTATGGTAAAAAAATTTCACTCAAATGGCTTAAGTTATGTGAACTATCCTTCCAGAAAACACGCCATTTGAGGAATACATATAATGAAAACTTACCCGTAAAGATCAGTAGAGATTGCCAAGAGCTAGAGCCCTCTATTGGTGAGCAGCTGGCTTCTTTGCTTTATCTCGAGCCAGATGGTGAACTCATGGCTGTCTCAATAGCAGCAGAATCGAAACGGAAAGACGAGAAAGCAAAGGGAGTTAATCCTGATATTGGAAATGAGAACCCAGATATCGTCCTGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAGAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCTGTTGGTCTACCATCGCAGGGCAGAGGGAGGGGCAGGGGAATCATGTGGACCCCACATATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAAAGTTTTCCACCTGGGATGATGGGTCCGGATGGTTTGTCTTATGGGCCTGTTACGGCCGATGGATTTCCCGTGCCTGACATTTTTGGTATGGCTCCTTGTGGTTTTGGTCCATATGGTCCTAGGTTTTCCGGTGATTTCATGGGTCCCTCATCTGCTATGATGTTTCGCGGACGACCTTCTCAACCTGGGGCCATGTTCACCCCTGGTGAGTTTGGGATGATGATGGGACAAGGACGTGGTCCCTTTATGGGTGGGATGGGAGTTACTGGTACTAGCCCAGCTCGACCTGGTCGTCCTGTGGGTGTTTCTCCATTGTATCCACCTCCAACAGGACCCTCAGCTCAGAACATCAATTGA

Coding sequence (CDS)

ATGAAGGGCGATGCTTGTGGATTCCTTCACCAGTATGATAATTCTCGGATGCCCATTTGCCGCTTCTTTCGTCTTTATGGTGAGTGTCGGGAGCAGGATTGCGTGTATAAACATACCAATGAAGATATAAAAGAGTGTAATATGTACAAGTTTGGTTTCTGTCCAAATGGTTCTGATTGTCGATATAGGCATGCAAAGCTACCTGGACCCCCACCTTCCGTGGAAGAAATCCTTCAGAAAATACAGCACTTAGGTTCATACAATTATGGCTCCTCAAACAAATTCTTTTCACAGCGTGGAGTTGGTTTGCCCCAACAGAATGAAAAATCTCAGTTTCCTCAGGGTCCGGCCCCTGTTACTCAAGGAGGGATTGGAAAACCTTCTACAACAGAATCTGCTAATGTCCAACAACAGCAAGTTCAACAACCTGCACAACAAACCAGCCAGACTCAGATACGAAGTGTTTCTAATGGCCAGCCTAATCAGTTAAACAGAACTGCAACATCTTTGCCTCAAGGAATATCTAGGTACTTTATTGTTAAAAGTTGCAACCGTGAGAATTTGGAGTTCTGTACAACAAGAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAACCGGACTCGACATTTTCAGGGTTGTGCAAATATGATGTCCAGGATTGGTGGTTCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTGCACATTATGGTAAAAAAATTTCACTCAAATGGCTTAAGTTATGTGAACTATCCTTCCAGAAAACACGCCATTTGAGGAATACATATAATGAAAACTTACCCGTAAAGATCAGTAGAGATTGCCAAGAGCTAGAGCCCTCTATTGGTGAGCAGCTGGCTTCTTTGCTTTATCTCGAGCCAGATGGTGAACTCATGGCTGTCTCAATAGCAGCAGAATCGAAACGGAAAGACGAGAAAGCAAAGGGAGTTAATCCTGATATTGGAAATGAGAACCCAGATATCGTCCTGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAGAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCTGTTGGTCTACCATCGCAGGGCAGAGGGAGGGGCAGGGGAATCATGTGGACCCCACATATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAAAGTTTTCCACCTGGGATGATGGGTCCGGATGGTTTGTCTTATGGGCCTGTTACGGCCGATGGATTTCCCGTGCCTGACATTTTTGGTATGGCTCCTTGTGGTTTTGGTCCATATGGTCCTAGGTTTTCCGGTGATTTCATGGGTCCCTCATCTGCTATGATGTTTCGCGGACGACCTTCTCAACCTGGGGCCATGTTCACCCCTGGTGAGTTTGGGATGATGATGGGACAAGGACGTGGTCCCTTTATGGGTGGGATGGGAGTTACTGGTACTAGCCCAGCTCGACCTGGTCGTCCTGTGGGTGTTTCTCCATTGTATCCACCTCCAACAGGACCCTCAGCTCAGAACATCAATTGA

Protein sequence

MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDCRYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRIGGSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDNEEEEEEESEEEEEESFGQSVGLPSQGRGRGRGIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPYGPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMMMGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

Homology

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BLAST of CsaV3_1G037380.1 vs. NCBI nr
Match: XP_011648522.1 (PREDICTED: LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucumis sativus])

HSP 1 Score: 1000.0 bits (2584), Expect = 3.1e-288
Identity = 523/524 (99.81%), Postives = 523/524 (99.81%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC
Sbjct: 94  MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 153

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT
Sbjct: 154 RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 213

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV 180
           QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV
Sbjct: 214 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV 273

Query: 181 KSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRIG 240
           KSCNRENLEFCTTRGVWATQRSNEAKLNEA DSADNVILIFSVNRTRHFQGCANMMSRIG
Sbjct: 274 KSCNRENLEFCTTRGVWATQRSNEAKLNEAVDSADNVILIFSVNRTRHFQGCANMMSRIG 333

Query: 241 GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP 300
           GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP
Sbjct: 334 GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP 393

Query: 301 SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX 360
           SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX
Sbjct: 394 SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX 453

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSY 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSY
Sbjct: 454 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSY 513

Query: 421 GPVTADGFPVPDIFGMAPCGFGPYGPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMM 480
           GPVTADGFPVPDIFGMAPCGFGPYGPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMM
Sbjct: 514 GPVTADGFPVPDIFGMAPCGFGPYGPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMM 573

Query: 481 MGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN 525
           MGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
Sbjct: 574 MGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN 617

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BLAST of CsaV3_1G037380.1 vs. NCBI nr
Match: KGN65929.1 (hypothetical protein Csa_1G538270 [Cucumis sativus])

HSP 1 Score: 957.2 bits (2473), Expect = 2.3e-275
Identity = 513/560 (91.61%), Postives = 517/560 (92.32%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC
Sbjct: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT
Sbjct: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGIS----- 180
           QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGIS     
Sbjct: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISSVAEI 180

Query: 181 ----------------RYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVIL 240
                           RYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEA DSADNVIL
Sbjct: 181 LRRNETIRKGLNGVILRYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAVDSADNVIL 240

Query: 241 IFSVNRTRHFQGCANMMSRIGGSVSGGNWKYAHGTAHY---------------GKKISLK 300
           IFSVNRTRHFQGCANMMSRIGGSVSGGNWKYAHGTAHY                  +  +
Sbjct: 241 IFSVNRTRHFQGCANMMSRIGGSVSGGNWKYAHGTAHYVAIMLMVVCTLSPSRTSNLLSE 300

Query: 301 WLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIA 360
           ++ LCELSFQKTRHLRNTYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIA
Sbjct: 301 FINLCELSFQKTRHLRNTYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIA 360

Query: 361 AESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           AESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 AESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPY 480
           XXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPY
Sbjct: 421 XXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPY 480

Query: 481 GPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMMMGQGRGPFMGGMGVTGTSPARPGR 525
           GPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMMMGQGRGPFMGGMGVTGTSPARPGR
Sbjct: 481 GPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMMMGQGRGPFMGGMGVTGTSPARPGR 540

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BLAST of CsaV3_1G037380.1 vs. NCBI nr
Match: XP_008445183.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo])

HSP 1 Score: 921.0 bits (2379), Expect = 1.8e-264
Identity = 488/524 (93.13%), Postives = 494/524 (94.27%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQYD SRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNG DC
Sbjct: 91  MKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGPDC 150

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT
Sbjct: 151 RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 210

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV 180
           QG IGKPST ESANVQQQQV          QI+SVSNGQPNQLNRTATSLPQGISRYFIV
Sbjct: 211 QGVIGKPSTAESANVQQQQVXXXXXXXXXXQIQSVSNGQPNQLNRTATSLPQGISRYFIV 270

Query: 181 KSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRIG 240
           KSCNRENLE    +GVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCA MMSRIG
Sbjct: 271 KSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIG 330

Query: 241 GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP 300
           GSVSGGNWKYAHGTAHYG+  SLKWLKLCELSFQKTRHLRN YNENLPVKISRDCQELEP
Sbjct: 331 GSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEP 390

Query: 301 SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX 360
           SIGEQLASLLYLEPDGELMAVSIAAESKR++EKAKGVNPDIGNENPDIV FEDXXXXXXX
Sbjct: 391 SIGEQLASLLYLEPDGELMAVSIAAESKREEEKAKGVNPDIGNENPDIVPFEDXXXXXXX 450

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSY 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXIMW PHMPMGRGARPFHGMQSFPPGMMGPDGLSY
Sbjct: 451 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWPPHMPMGRGARPFHGMQSFPPGMMGPDGLSY 510

Query: 421 GPVTADGFPVPDIFGMAPCGFGPYGPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMM 480
           GPVT DGFP+PDIFGMAP GFGPYGPRFSGDFMGP SAMMFRGRPSQPGAMFTPG FGMM
Sbjct: 511 GPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPSAMMFRGRPSQPGAMFTPGGFGMM 570

Query: 481 MGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN 525
           MGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPP  PSAQNIN
Sbjct: 571 MGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPAVPSAQNIN 614

[Close]

BLAST of CsaV3_1G037380.1 vs. NCBI nr
Match: XP_004141524.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis sativus] >KGN52613.1 hypothetical protein Csa_5G647360 [Cucumis sativus])

HSP 1 Score: 877.1 bits (2265), Expect = 3.0e-251
Identity = 464/526 (88.21%), Postives = 482/526 (91.63%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQYD SRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNG DC
Sbjct: 89  MKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGPDC 148

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPP +EEILQKIQHLGSYNYG SNKFF+QRGVGL QQNEKSQFPQ PA VT
Sbjct: 149 RYRHAKLPGPPPPLEEILQKIQHLGSYNYGPSNKFFTQRGVGLSQQNEKSQFPQVPALVT 208

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV 180
           QG  GKPS  ES NVQQQQ QQ A Q SQT ++S+SNGQPNQLNR ATSLPQGISRYFIV
Sbjct: 209 QGVTGKPSAAESVNVQQQQGQQSAPQASQTPVQSLSNGQPNQLNRNATSLPQGISRYFIV 268

Query: 181 KSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRIG 240
           KSCNRENLE    +GVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCA MMSRIG
Sbjct: 269 KSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIG 328

Query: 241 GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP 300
           GSVSGGNWKYAHGT HYG+  SLKWLKLCELSFQKTRHLRN YNENLPVKISRDCQELEP
Sbjct: 329 GSVSGGNWKYAHGTPHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEP 388

Query: 301 SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX 360
           S+GEQLASLLYLEPDGELMAVS+AAESKR++EKAKGVNPDIG+ENPDIV FEDXXXXXXX
Sbjct: 389 SVGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDIGSENPDIVPFEDXXXXXXX 448

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSY 420
           XXXXXXXXXXXXXXXXXXXXXXXXXX+MW PHMPMGRGARPFHGMQ FPPGMMGPDGLSY
Sbjct: 449 XXXXXXXXXXXXXXXXXXXXXXXXXXMMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSY 508

Query: 421 GPVTADGFPVPDIFGMAPCGFGPYG--PRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFG 480
           GPVT DGFP+PDIFGM P GFGPYG  PRFSGDFMGP +AMMFRGRPSQP AMF P  FG
Sbjct: 509 GPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSGDFMGPPTAMMFRGRPSQPAAMFPPSGFG 568

Query: 481 MMMGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN 525
           MMMGQGRGPFMGGMGV G +PARPGRPVGVSPLYPPP  PS+QN+N
Sbjct: 569 MMMGQGRGPFMGGMGVAGANPARPGRPVGVSPLYPPPAVPSSQNMN 614

[Close]

BLAST of CsaV3_1G037380.1 vs. NCBI nr
Match: XP_008459517.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo])

HSP 1 Score: 875.2 bits (2260), Expect = 1.1e-250
Identity = 467/527 (88.61%), Postives = 485/527 (92.03%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQYD SRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNG DC
Sbjct: 89  MKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGPDC 148

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPP VEEILQKIQHLGSYNYG SNKFF+QRGVGL QQNEKSQFPQ PA  T
Sbjct: 149 RYRHAKLPGPPPPVEEILQKIQHLGSYNYGPSNKFFTQRGVGLSQQNEKSQFPQVPAITT 208

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV 180
           QG  GKPS  ESANVQQQQ QQ A Q SQT ++++SNGQPNQLNR ATSLPQGISRYFIV
Sbjct: 209 QGVTGKPSAAESANVQQQQGQQSAPQASQTPVQNLSNGQPNQLNRNATSLPQGISRYFIV 268

Query: 181 KSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRIG 240
           KSCNRENLE    +GVWATQRSNEAKLNEAFD+ADNVILIFSVNRTRHFQGCA MMSRIG
Sbjct: 269 KSCNRENLELSVQQGVWATQRSNEAKLNEAFDTADNVILIFSVNRTRHFQGCAKMMSRIG 328

Query: 241 GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP 300
           GSVSGGNWKYAHGTAHYG+  SLKWLKLCELSFQKTRHLRN YNENLPVKISRDCQELEP
Sbjct: 329 GSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEP 388

Query: 301 SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX 360
           SIGEQLASLLYLEPDGELMAVSIAAESKR++EKAKGVNPDIG+ENPDIV FEDXXXXXXX
Sbjct: 389 SIGEQLASLLYLEPDGELMAVSIAAESKREEEKAKGVNPDIGSENPDIVPFEDXXXXXXX 448

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSY 420
           XXXXXXXXXXXXXXXXXXXXXXXXXX+MW P MP+GRGARPFHGMQ FPPGMMGPDGLSY
Sbjct: 449 XXXXXXXXXXXXXXXXXXXXXXXXXXMMWPPQMPIGRGARPFHGMQGFPPGMMGPDGLSY 508

Query: 421 GPVTADGFPVPDIFGMAPCGFGPYG--PRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFG 480
           GPVT DGFP+PDIFGMAP GFGPYG  PRFS DFMGP +AMMFRGRPSQPGAMF PG FG
Sbjct: 509 GPVTPDGFPMPDIFGMAPRGFGPYGPTPRFSSDFMGPPTAMMFRGRPSQPGAMFPPGGFG 568

Query: 481 MMMGQGR-GPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN 525
           MMMGQGR GPFMGGMGVTG +PARPGRPVGVSPLYPPP  PS+QN+N
Sbjct: 569 MMMGQGRGGPFMGGMGVTGANPARPGRPVGVSPLYPPPAVPSSQNMN 615

[Close]

BLAST of CsaV3_1G037380.1 vs. TAIR10
Match: AT1G30460.1 (cleavage and polyadenylation specificity factor 30)

HSP 1 Score: 579.3 bits (1492), Expect = 2.4e-165
Identity = 348/522 (66.67%), Postives = 385/522 (73.75%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQ+D +RMPICRFFRLYGECREQDCVYKHTNEDIKECNMYK GFCPNG DC
Sbjct: 75  MKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDC 134

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPP VEE+LQKIQ L +YNYG +N+ +  R V  PQ  ++   PQG  P+ 
Sbjct: 135 RYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-TNRLYQARNVA-PQLQDR---PQGQVPM- 194

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV 180
           QG                         SQT I + +    +Q NRT+  LPQG++RYF+V
Sbjct: 195 QG--QXXXXXXXXXXXXXXXXXXXXXXSQTLIPNPA----DQTNRTSHPLPQGVNRYFVV 254

Query: 181 KSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRIG 240
           KS NREN E    +GVWATQRSNEAKLNEAFDS +NVILIFSVNRTRHFQGCA M SRIG
Sbjct: 255 KSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIG 314

Query: 241 GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP 300
           G + GGNWK+ HGTA YG+  S+KWLKLCELSF KTR+LRN YNENLPVKISRDCQELEP
Sbjct: 315 GYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRDCQELEP 374

Query: 301 SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX 360
           S+GEQLASLLYLEPD ELMA+SIAAE+KR++EKAKGVNP+   ENPDIV FED   XXXX
Sbjct: 375 SVGEQLASLLYLEPDSELMAISIAAEAKREEEKAKGVNPESRAENPDIVPFED---XXXX 434

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGP-DGLS 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXIMW P MP+GRG RP  GM  FP G+MGP D   
Sbjct: 435 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWPPQMPLGRGIRPMPGMGGFPLGVMGPGDAFP 494

Query: 421 YGPVTADGFPVPDIFGMAPCGFGPYGPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGM 480
           YGP   +G  +PD FGM P  FGPYGPRF GDF GP   MMF GRP Q    F  G +G 
Sbjct: 495 YGPGGYNG--MPDPFGMGPRPFGPYGPRFGGDFRGPVPGMMFPGRPPQ---QFPHGGYG- 554

Query: 481 MMGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQ 522
           MMG GRGP MGGMG           P G  P+Y PP   SA+
Sbjct: 555 MMGGGRGPHMGGMG---------NAPRGGRPMYYPPATSSAR 566

[Close]

BLAST of CsaV3_1G037380.1 vs. TAIR10
Match: AT4G11970.1 (YTH family protein)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-28
Identity = 72/155 (46.45%), Postives = 91/155 (58.71%), Query Frame = 0


Query: 160 PNQL---NRTATSLPQGISRYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADN 219
           P+QL        S P   +RYFI+KS N +N++    +G+WATQ  NE  L  AF  +  
Sbjct: 54  PDQLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR 113

Query: 220 VILIFSVNRTRHFQGCANMMSRIGGSVSGGNWKYAHGTAH-YGKKISLKWLKLCELSFQK 279
           VILIFSVN +  FQG A M+S +G       W    G  + +G+   +KWL+L EL FQK
Sbjct: 114 VILIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQK 173

Query: 280 TRHLRNTYNENLPVKISRDCQELEPSIGEQLASLL 311
           T HL+N  N+  PVKISRDCQEL   IGE L  LL
Sbjct: 174 TLHLKNPLNDYKPVKISRDCQELPEDIGEALCELL 207

[Close]

BLAST of CsaV3_1G037380.1 vs. TAIR10
Match: AT1G27960.1 (evolutionarily conserved C-terminal region 9)

HSP 1 Score: 62.8 bits (151), Expect = 7.4e-10
Identity = 38/130 (29.23%), Postives = 67/130 (51.54%), Query Frame = 0


Query: 175 SRYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAF------DSADNVILIFSVNRTRH 234
           +++F++KS + +N+       VWA+ ++   KL+ A+      D A  V L+FSVN +  
Sbjct: 330 AKFFVIKSYSEDNVHKSIKHCVWASTKNGNKKLDAAYREAKKKDVACPVFLLFSVNASSQ 389

Query: 235 FQGCANMMSRIGGSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLP 294
           F G A M+  +  + S   W+    + H+     ++WL + ++     RH+    N+N P
Sbjct: 390 FCGVAEMVGPVDFNTSVEYWQQDRWSGHF----PVQWLIVKDVPNSLFRHIIIESNDNKP 449

Query: 295 VKISRDCQEL 299
           V  SRD QE+
Sbjct: 450 VTNSRDTQEV 455

[Close]

BLAST of CsaV3_1G037380.1 vs. TAIR10
Match: AT3G03950.3 (evolutionarily conserved C-terminal region 1)

HSP 1 Score: 59.7 bits (143), Expect = 6.3e-09
Identity = 37/141 (26.24%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 175 SRYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADN------VILIFSVNRTRH 234
           +++F++KS + +++  C   G W++  +   KLN A+  A        V L+FSVN +  
Sbjct: 245 AKFFVIKSYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKENSQECPVYLLFSVNASGQ 304

Query: 235 FQGCANMMSRIGGSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLP 294
           F G A M+  +  + +   W+       +     +KW  + ++     RH+    NEN P
Sbjct: 305 FVGLAEMVGPVDFNKTMEYWQQDKWIGCF----PVKWHIIKDIPNSLLRHITLANNENKP 364

Query: 295 VKISRDCQELEPSIGEQLASL 310
           V  SRD QE+    G ++  +
Sbjct: 365 VTNSRDTQEVNLEHGTKIIKI 381

[Close]

BLAST of CsaV3_1G037380.1 vs. TAIR10
Match: AT1G79270.1 (evolutionarily conserved C-terminal region 8)

HSP 1 Score: 56.2 bits (134), Expect = 6.9e-08
Identity = 65/298 (21.81%), Postives = 114/298 (38.26%), Query Frame = 0


Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVG------------------ 120
           RY +      PP  + I     +  +Y Y  S   F+  G+G                  
Sbjct: 169 RYVYGVASYTPPLKQNISSSSHNHNNY-YSKSKNSFTGHGMGDRPKTPRKASQNSYAPPP 228

Query: 121 -LPQQNEKSQFPQGPAPVTQGGIGKPSTTES--------------ANVQQQQVQQPAQQT 180
            L Q+  +  +P  P     G + +  T ++              AN Q        +  
Sbjct: 229 LLNQEKGRIAYPMDPVKKKSGALNRDETEKAKARTKENGTSMNDLANGQDHITNGECESC 288

Query: 181 S-QTQIRSVSNGQPNQLNRTATSLPQGISRY-----FIVKSCNRENLEFCTTRGVWATQR 240
           S   +    SNG  + + R   +LP   ++Y     F++KS + +++       VW++  
Sbjct: 289 SLDAEGNERSNGVGSVIRRDQYNLPSFQTKYEEAIFFVIKSYSEDDIHKSIKYNVWSSTL 348

Query: 241 SNEAKLNEAFDSADN----------VILIFSVNRTRHFQGCANMMSRIGGSVSGGNWKYA 300
           +   KL+ A+  +            V L FSVN +  F G A M+ R+    S   W+  
Sbjct: 349 NGNKKLDSAYQESQKKAADKSGKCPVFLFFSVNASGQFCGVAEMIGRVDYEKSMEFWQQD 408

Query: 301 HGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEPSIGEQLASL 310
             T ++     +KW  + ++   + RH+    NEN PV  SRD QE+    G ++ ++
Sbjct: 409 KWTGYF----PVKWHIIKDVPNPQLRHIILENNENKPVTNSRDTQEVRLPQGNEVLNI 461

[Close]

BLAST of CsaV3_1G037380.1 vs. Swiss-Prot
Match: sp|A9LNK9|CPSF_ARATH (30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana OX=3702 GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 4.2e-164
Identity = 348/522 (66.67%), Postives = 385/522 (73.75%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQ+D +RMPICRFFRLYGECREQDCVYKHTNEDIKECNMYK GFCPNG DC
Sbjct: 75  MKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDC 134

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPP VEE+LQKIQ L +YNYG +N+ +  R V  PQ  ++   PQG  P+ 
Sbjct: 135 RYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-TNRLYQARNVA-PQLQDR---PQGQVPM- 194

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV 180
           QG                         SQT I + +    +Q NRT+  LPQG++RYF+V
Sbjct: 195 QG--QXXXXXXXXXXXXXXXXXXXXXXSQTLIPNPA----DQTNRTSHPLPQGVNRYFVV 254

Query: 181 KSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRIG 240
           KS NREN E    +GVWATQRSNEAKLNEAFDS +NVILIFSVNRTRHFQGCA M SRIG
Sbjct: 255 KSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIG 314

Query: 241 GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP 300
           G + GGNWK+ HGTA YG+  S+KWLKLCELSF KTR+LRN YNENLPVKISRDCQELEP
Sbjct: 315 GYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRDCQELEP 374

Query: 301 SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX 360
           S+GEQLASLLYLEPD ELMA+SIAAE+KR++EKAKGVNP+   ENPDIV FED   XXXX
Sbjct: 375 SVGEQLASLLYLEPDSELMAISIAAEAKREEEKAKGVNPESRAENPDIVPFED---XXXX 434

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGP-DGLS 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXIMW P MP+GRG RP  GM  FP G+MGP D   
Sbjct: 435 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWPPQMPLGRGIRPMPGMGGFPLGVMGPGDAFP 494

Query: 421 YGPVTADGFPVPDIFGMAPCGFGPYGPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGM 480
           YGP   +G  +PD FGM P  FGPYGPRF GDF GP   MMF GRP Q    F  G +G 
Sbjct: 495 YGPGGYNG--MPDPFGMGPRPFGPYGPRFGGDFRGPVPGMMFPGRPPQ---QFPHGGYG- 554

Query: 481 MMGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQ 522
           MMG GRGP MGGMG           P G  P+Y PP   SA+
Sbjct: 555 MMGGGRGPHMGGMG---------NAPRGGRPMYYPPATSSAR 566

[Close]

BLAST of CsaV3_1G037380.1 vs. Swiss-Prot
Match: sp|Q0DA50|C3H45_ORYSJ (Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0677700 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 2.1e-115
Identity = 271/509 (53.24%), Postives = 305/509 (59.92%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKG+ACGFLHQ+D +RMP                           CNMYK GFCPNG +C
Sbjct: 73  MKGEACGFLHQFDKARMPXXXXXXXXXXXXXXXXXXXXXXXXXXXCNMYKMGFCPNGPNC 132

Query: 61  RYRHAKLPGP----------PPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNE-- 120
           RY+H KLPGP                                       G GLP QN   
Sbjct: 133 RYKHVKLPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGLPNQNSID 192

Query: 121 -KSQFPQGPAPVTQGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTA 180
                                                   +  Q++SV NG  NQ  R A
Sbjct: 193 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNDQVQSVPNGSSNQATRIA 252

Query: 181 TSLPQGISRYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTR 240
           T LPQG SRYFIVKSCNRENLE    +G+WATQRSNEAKLNEAF+S +NVILIFS+NRTR
Sbjct: 253 TPLPQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIENVILIFSINRTR 312

Query: 241 HFQGCANMMSRIGGSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENL 300
           +FQGCA M SRIGG + GGNWK AHGTAHYG+  S++WLKLCELSFQKT HLRN YN+NL
Sbjct: 313 NFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCELSFQKTHHLRNPYNDNL 372

Query: 301 PVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPD 360
           PVKISRDCQELEP IGEQLASLLYLEPD EL A+ IAAE+K+++EKAKGV+ D   +N D
Sbjct: 373 PVKISRDCQELEPFIGEQLASLLYLEPDSELTAILIAAEAKKEEEKAKGVSADEAADNQD 432

Query: 361 IVLFEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQS 420
           IVLF+D     XXXXXXXXXXXXXXXXXXXXXXXXXXXX MW P MPM RG  P  G + 
Sbjct: 433 IVLFDD-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWPPQMPMLRGVGPMMGGRG 492

Query: 421 FPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPYGPRFSGDFM--GPSSAMMFRGRP 480
           FPP M+G DG  +                   GF P+GPRF GDF   GP   M+F GRP
Sbjct: 493 FPPNMIG-DGFGF-----XXXXXXXXXXXXXXGFPPFGPRFPGDFARGGPMPGMVFPGRP 552

Query: 481 SQPGAMFTPGEFGMMMGQGRGPFMGGMGV 495
            QPG MF  G   MMMG GRGP MGG+G+
Sbjct: 553 PQPGGMFPMG-LEMMMGPGRGPLMGGLGM 569

[Close]

BLAST of CsaV3_1G037380.1 vs. Swiss-Prot
Match: sp|B2RR83|YTDC2_MOUSE (3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-24
Identity = 66/142 (46.48%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 176  RYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANM 235
            RYFI+KS N  NLE    +G+W+T  SNE KLN AF  +  V L+FSV  + HFQG + M
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1363

Query: 236  MSRIGGSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDC 295
             S IG   S  +W    G+A  G    ++W++   L FQ   HL N +N+N  V+ISRD 
Sbjct: 1364 SSEIGREKS-QDW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDG 1423

Query: 296  QELEPSIGEQLASLLYLEPDGE 318
            QELEP +GEQL  L    P GE
Sbjct: 1424 QELEPQVGEQLLQLWERLPLGE 1440

[Close]

BLAST of CsaV3_1G037380.1 vs. Swiss-Prot
Match: sp|Q5R746|YTDC2_PONAB (3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-24
Identity = 66/142 (46.48%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 176  RYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANM 235
            RYFI+KS N  NLE    +G+W+T  SNE KLN AF  +  V L+FSV  + HFQG + M
Sbjct: 1289 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1348

Query: 236  MSRIGGSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDC 295
             S IG   S  +W    G+A  G    ++W++   L FQ   HL N +N+N  V+ISRD 
Sbjct: 1349 SSEIGREKS-QDW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDG 1408

Query: 296  QELEPSIGEQLASLLYLEPDGE 318
            QELEP +GEQL  L    P GE
Sbjct: 1409 QELEPQVGEQLLQLWERLPLGE 1425

[Close]

BLAST of CsaV3_1G037380.1 vs. Swiss-Prot
Match: sp|Q9H6S0|YTDC2_HUMAN (3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 2.3e-24
Identity = 66/142 (46.48%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 176  RYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANM 235
            RYFI+KS N  NLE    +G+W+T  SNE KLN AF  +  V L+FSV  + HFQG + M
Sbjct: 1289 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRM 1348

Query: 236  MSRIGGSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDC 295
             S IG   S  +W    G+A  G    ++W++   L FQ   HL N +N+N  V+ISRD 
Sbjct: 1349 SSEIGREKS-QDW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDG 1408

Query: 296  QELEPSIGEQLASLLYLEPDGE 318
            QELEP +GEQL  L    P GE
Sbjct: 1409 QELEPLVGEQLLQLWERLPLGE 1425

[Close]

BLAST of CsaV3_1G037380.1 vs. TrEMBL
Match: tr|A0A0A0LY24|A0A0A0LY24_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538270 PE=4 SV=1)

HSP 1 Score: 957.2 bits (2473), Expect = 1.5e-275
Identity = 513/560 (91.61%), Postives = 517/560 (92.32%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC
Sbjct: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT
Sbjct: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGIS----- 180
           QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGIS     
Sbjct: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISSVAEI 180

Query: 181 ----------------RYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVIL 240
                           RYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEA DSADNVIL
Sbjct: 181 LRRNETIRKGLNGVILRYFIVKSCNRENLEFCTTRGVWATQRSNEAKLNEAVDSADNVIL 240

Query: 241 IFSVNRTRHFQGCANMMSRIGGSVSGGNWKYAHGTAHY---------------GKKISLK 300
           IFSVNRTRHFQGCANMMSRIGGSVSGGNWKYAHGTAHY                  +  +
Sbjct: 241 IFSVNRTRHFQGCANMMSRIGGSVSGGNWKYAHGTAHYVAIMLMVVCTLSPSRTSNLLSE 300

Query: 301 WLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIA 360
           ++ LCELSFQKTRHLRNTYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIA
Sbjct: 301 FINLCELSFQKTRHLRNTYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIA 360

Query: 361 AESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           AESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 AESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPY 480
           XXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPY
Sbjct: 421 XXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTADGFPVPDIFGMAPCGFGPY 480

Query: 481 GPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMMMGQGRGPFMGGMGVTGTSPARPGR 525
           GPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMMMGQGRGPFMGGMGVTGTSPARPGR
Sbjct: 481 GPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMMMGQGRGPFMGGMGVTGTSPARPGR 540

[Close]

BLAST of CsaV3_1G037380.1 vs. TrEMBL
Match: tr|A0A1S3BC28|A0A1S3BC28_CUCME (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=3656 GN=LOC103488286 PE=4 SV=1)

HSP 1 Score: 921.0 bits (2379), Expect = 1.2e-264
Identity = 488/524 (93.13%), Postives = 494/524 (94.27%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQYD SRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNG DC
Sbjct: 91  MKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGPDC 150

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT
Sbjct: 151 RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 210

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV 180
           QG IGKPST ESANVQQQQV          QI+SVSNGQPNQLNRTATSLPQGISRYFIV
Sbjct: 211 QGVIGKPSTAESANVQQQQVXXXXXXXXXXQIQSVSNGQPNQLNRTATSLPQGISRYFIV 270

Query: 181 KSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRIG 240
           KSCNRENLE    +GVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCA MMSRIG
Sbjct: 271 KSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIG 330

Query: 241 GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP 300
           GSVSGGNWKYAHGTAHYG+  SLKWLKLCELSFQKTRHLRN YNENLPVKISRDCQELEP
Sbjct: 331 GSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEP 390

Query: 301 SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX 360
           SIGEQLASLLYLEPDGELMAVSIAAESKR++EKAKGVNPDIGNENPDIV FEDXXXXXXX
Sbjct: 391 SIGEQLASLLYLEPDGELMAVSIAAESKREEEKAKGVNPDIGNENPDIVPFEDXXXXXXX 450

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSY 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXIMW PHMPMGRGARPFHGMQSFPPGMMGPDGLSY
Sbjct: 451 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWPPHMPMGRGARPFHGMQSFPPGMMGPDGLSY 510

Query: 421 GPVTADGFPVPDIFGMAPCGFGPYGPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFGMM 480
           GPVT DGFP+PDIFGMAP GFGPYGPRFSGDFMGP SAMMFRGRPSQPGAMFTPG FGMM
Sbjct: 511 GPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPSAMMFRGRPSQPGAMFTPGGFGMM 570

Query: 481 MGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN 525
           MGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPP  PSAQNIN
Sbjct: 571 MGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPAVPSAQNIN 614

[Close]

BLAST of CsaV3_1G037380.1 vs. TrEMBL
Match: tr|A0A0A0KSR6|A0A0A0KSR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647360 PE=4 SV=1)

HSP 1 Score: 877.1 bits (2265), Expect = 2.0e-251
Identity = 464/526 (88.21%), Postives = 482/526 (91.63%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQYD SRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNG DC
Sbjct: 89  MKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGPDC 148

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPP +EEILQKIQHLGSYNYG SNKFF+QRGVGL QQNEKSQFPQ PA VT
Sbjct: 149 RYRHAKLPGPPPPLEEILQKIQHLGSYNYGPSNKFFTQRGVGLSQQNEKSQFPQVPALVT 208

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV 180
           QG  GKPS  ES NVQQQQ QQ A Q SQT ++S+SNGQPNQLNR ATSLPQGISRYFIV
Sbjct: 209 QGVTGKPSAAESVNVQQQQGQQSAPQASQTPVQSLSNGQPNQLNRNATSLPQGISRYFIV 268

Query: 181 KSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRIG 240
           KSCNRENLE    +GVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCA MMSRIG
Sbjct: 269 KSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIG 328

Query: 241 GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP 300
           GSVSGGNWKYAHGT HYG+  SLKWLKLCELSFQKTRHLRN YNENLPVKISRDCQELEP
Sbjct: 329 GSVSGGNWKYAHGTPHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEP 388

Query: 301 SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX 360
           S+GEQLASLLYLEPDGELMAVS+AAESKR++EKAKGVNPDIG+ENPDIV FEDXXXXXXX
Sbjct: 389 SVGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDIGSENPDIVPFEDXXXXXXX 448

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSY 420
           XXXXXXXXXXXXXXXXXXXXXXXXXX+MW PHMPMGRGARPFHGMQ FPPGMMGPDGLSY
Sbjct: 449 XXXXXXXXXXXXXXXXXXXXXXXXXXMMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSY 508

Query: 421 GPVTADGFPVPDIFGMAPCGFGPYG--PRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFG 480
           GPVT DGFP+PDIFGM P GFGPYG  PRFSGDFMGP +AMMFRGRPSQP AMF P  FG
Sbjct: 509 GPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSGDFMGPPTAMMFRGRPSQPAAMFPPSGFG 568

Query: 481 MMMGQGRGPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN 525
           MMMGQGRGPFMGGMGV G +PARPGRPVGVSPLYPPP  PS+QN+N
Sbjct: 569 MMMGQGRGPFMGGMGVAGANPARPGRPVGVSPLYPPPAVPSSQNMN 614

[Close]

BLAST of CsaV3_1G037380.1 vs. TrEMBL
Match: tr|A0A1S3CAV8|A0A1S3CAV8_CUCME (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo OX=3656 GN=LOC103498632 PE=4 SV=1)

HSP 1 Score: 875.2 bits (2260), Expect = 7.6e-251
Identity = 467/527 (88.61%), Postives = 485/527 (92.03%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKGDACGFLHQYD SRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNG DC
Sbjct: 89  MKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGPDC 148

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPP VEEILQKIQHLGSYNYG SNKFF+QRGVGL QQNEKSQFPQ PA  T
Sbjct: 149 RYRHAKLPGPPPPVEEILQKIQHLGSYNYGPSNKFFTQRGVGLSQQNEKSQFPQVPAITT 208

Query: 121 QGGIGKPSTTESANVQQQQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFIV 180
           QG  GKPS  ESANVQQQQ QQ A Q SQT ++++SNGQPNQLNR ATSLPQGISRYFIV
Sbjct: 209 QGVTGKPSAAESANVQQQQGQQSAPQASQTPVQNLSNGQPNQLNRNATSLPQGISRYFIV 268

Query: 181 KSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRIG 240
           KSCNRENLE    +GVWATQRSNEAKLNEAFD+ADNVILIFSVNRTRHFQGCA MMSRIG
Sbjct: 269 KSCNRENLELSVQQGVWATQRSNEAKLNEAFDTADNVILIFSVNRTRHFQGCAKMMSRIG 328

Query: 241 GSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELEP 300
           GSVSGGNWKYAHGTAHYG+  SLKWLKLCELSFQKTRHLRN YNENLPVKISRDCQELEP
Sbjct: 329 GSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEP 388

Query: 301 SIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXXX 360
           SIGEQLASLLYLEPDGELMAVSIAAESKR++EKAKGVNPDIG+ENPDIV FEDXXXXXXX
Sbjct: 389 SIGEQLASLLYLEPDGELMAVSIAAESKREEEKAKGVNPDIGSENPDIVPFEDXXXXXXX 448

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPMGRGARPFHGMQSFPPGMMGPDGLSY 420
           XXXXXXXXXXXXXXXXXXXXXXXXXX+MW P MP+GRGARPFHGMQ FPPGMMGPDGLSY
Sbjct: 449 XXXXXXXXXXXXXXXXXXXXXXXXXXMMWPPQMPIGRGARPFHGMQGFPPGMMGPDGLSY 508

Query: 421 GPVTADGFPVPDIFGMAPCGFGPYG--PRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFG 480
           GPVT DGFP+PDIFGMAP GFGPYG  PRFS DFMGP +AMMFRGRPSQPGAMF PG FG
Sbjct: 509 GPVTPDGFPMPDIFGMAPRGFGPYGPTPRFSSDFMGPPTAMMFRGRPSQPGAMFPPGGFG 568

Query: 481 MMMGQGR-GPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN 525
           MMMGQGR GPFMGGMGVTG +PARPGRPVGVSPLYPPP  PS+QN+N
Sbjct: 569 MMMGQGRGGPFMGGMGVTGANPARPGRPVGVSPLYPPPAVPSSQNMN 615

[Close]

BLAST of CsaV3_1G037380.1 vs. TrEMBL
Match: tr|A0A2P6Q633|A0A2P6Q633_ROSCH (Putative transcription factor C3H family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0015861 PE=4 SV=1)

HSP 1 Score: 746.9 bits (1927), Expect = 3.1e-212
Identity = 403/507 (79.49%), Postives = 430/507 (84.81%), Query Frame = 0


Query: 1   MKGDACGFLHQYDNSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGSDC 60
           MKG+ACGFLHQYD SRMP+CRFFR+YGECREQDCVYKHTNEDIKECNMYK GFCPNG DC
Sbjct: 80  MKGEACGFLHQYDKSRMPVCRFFRMYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDC 139

Query: 61  RYRHAKLPGPPPSVEEILQKIQHLGSYNYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVT 120
           RYRHAKLPGPPP VEE+LQKIQHL SYNY +SNKFF QR  G PQQ ++SQ  Q P    
Sbjct: 140 RYRHAKLPGPPPPVEEVLQKIQHLNSYNYNNSNKFFQQRNGGFPQQPDRSQPAQVPNSFN 199

Query: 121 QGGIGKPSTTESANVQQ-QQVQQPAQQTSQTQIRSVSNGQPNQLNRTATSLPQGISRYFI 180
           Q  I +PS  ESANVQQ QQ QQ  QQ  QTQ +S+ NG P+Q NR A  LPQGISRYFI
Sbjct: 200 QVVI-RPSAAESANVQQPQQFQQTQQQVGQTQAQSIPNGLPSQANRAALPLPQGISRYFI 259

Query: 181 VKSCNRENLEFCTTRGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCANMMSRI 240
           VKSCNRENLE    +GVWATQRSNE+KLNEAFDSA+NVILIFSVNRTRHFQGCA MMSRI
Sbjct: 260 VKSCNRENLELSVQQGVWATQRSNESKLNEAFDSAENVILIFSVNRTRHFQGCAKMMSRI 319

Query: 241 GGSVSGGNWKYAHGTAHYGKKISLKWLKLCELSFQKTRHLRNTYNENLPVKISRDCQELE 300
           GGSVSGGNWKYAHGTAHYG+  S+KWLKLCELSF KTRHLRN YNENLPVKISRDCQELE
Sbjct: 320 GGSVSGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELE 379

Query: 301 PSIGEQLASLLYLEPDGELMAVSIAAESKRKDEKAKGVNPDIGNENPDIVLFEDXXXXXX 360
           PSIGEQLASLLYLEPD ELMA+SIAAESKR++EKAKGVNP+ G ENPDIV FED    XX
Sbjct: 380 PSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPENGGENPDIVPFED----XX 439

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXIMWTPHMPM-GRGARPFHGMQSFPPGMMGPDGL 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXX MW PHMP+ GRG RP  GMQ FPPGMMGPD +
Sbjct: 440 XXXXXXXXXXXXXXXXXXXXXXXXXXXXMWPPHMPLGGRGGRPMPGMQGFPPGMMGPDAM 499

Query: 421 SYGPVTADGFPVPDIFGMAPCGFGPYGPRFSGDFMGPSSAMMFRGRPSQPGAMFTPGEFG 480
            YGPVT DGF +P+ FGM P GF PYGPRFSGDF GP+S MMFRGRPSQPG MF PG +G
Sbjct: 500 PYGPVTPDGFVMPNPFGMGPRGFNPYGPRFSGDFNGPNSGMMFRGRPSQPGGMFPPGPYG 559

Query: 481 MMMGQGRGPFMGGMGVTGTSPARPGRP 506
           MMMG GRGPFMGGMGV G +PAR GRP
Sbjct: 560 MMMGPGRGPFMGGMGVGGANPARGGRP 581

The following BLAST results are available for this feature:

BLAST of CsaV3_1G037380.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648522.1	3.1e-288	99.81	PREDICTED: LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity ...	[more]
KGN65929.1	2.3e-275	91.61	hypothetical protein Csa_1G538270 [Cucumis sativus]	[more]
XP_008445183.1	1.8e-264	93.13	PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis me...	[more]
XP_004141524.1	3.0e-251	88.21	PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucum...	[more]
XP_008459517.1	1.1e-250	88.61	PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucum...	[more]

BLAST of CsaV3_1G037380.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30460.1	2.4e-165	66.67	cleavage and polyadenylation specificity factor 30	[more]
AT4G11970.1	1.2e-28	46.45	YTH family protein	[more]
AT1G27960.1	7.4e-10	29.23	evolutionarily conserved C-terminal region 9	[more]
AT3G03950.3	6.3e-09	26.24	evolutionarily conserved C-terminal region 1	[more]
AT1G79270.1	6.9e-08	21.81	evolutionarily conserved C-terminal region 8	[more]

BLAST of CsaV3_1G037380.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A9LNK9\|CPSF_ARATH	4.2e-164	66.67	30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thalian...	[more]
sp\|Q0DA50\|C3H45_ORYSJ	2.1e-115	53.24	Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|B2RR83\|YTDC2_MOUSE	1.0e-24	46.48	3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1	[more]
sp\|Q5R746\|YTDC2_PONAB	1.0e-24	46.48	3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2	[more]
sp\|Q9H6S0\|YTDC2_HUMAN	2.3e-24	46.48	3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2	[more]

BLAST of CsaV3_1G037380.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY24\|A0A0A0LY24_CUCSA	1.5e-275	91.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538270 PE=4 SV=1	[more]
tr\|A0A1S3BC28\|A0A1S3BC28_CUCME	1.2e-264	93.13	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=365...	[more]
tr\|A0A0A0KSR6\|A0A0A0KSR6_CUCSA	2.0e-251	88.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647360 PE=4 SV=1	[more]
tr\|A0A1S3CAV8\|A0A1S3CAV8_CUCME	7.6e-251	88.61	30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo O...	[more]
tr\|A0A2P6Q633\|A0A2P6Q633_ROSCH	3.1e-212	79.49	Putative transcription factor C3H family OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR007275	YTH_domain
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G037380	CsaV3_1G037380	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G037380.1.cds7	CsaV3_1G037380.1.cds7	CDS
CsaV3_1G037380.1.cds6	CsaV3_1G037380.1.cds6	CDS
CsaV3_1G037380.1.cds5	CsaV3_1G037380.1.cds5	CDS
CsaV3_1G037380.1.cds4	CsaV3_1G037380.1.cds4	CDS
CsaV3_1G037380.1.cds3	CsaV3_1G037380.1.cds3	CDS
CsaV3_1G037380.1.cds2	CsaV3_1G037380.1.cds2	CDS
CsaV3_1G037380.1.cds1	CsaV3_1G037380.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G037380.1.exon7	CsaV3_1G037380.1.exon7	exon
CsaV3_1G037380.1.exon6	CsaV3_1G037380.1.exon6	exon
CsaV3_1G037380.1.exon5	CsaV3_1G037380.1.exon5	exon
CsaV3_1G037380.1.exon4	CsaV3_1G037380.1.exon4	exon
CsaV3_1G037380.1.exon3	CsaV3_1G037380.1.exon3	exon
CsaV3_1G037380.1.exon2	CsaV3_1G037380.1.exon2	exon
CsaV3_1G037380.1.exon1	CsaV3_1G037380.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G037380.1	CsaV3_1G037380.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 348..368
None	No IPR available	GENE3D	G3DSA:3.10.590.10		coord: 175..328 e-value: 5.5E-52 score: 177.5
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 1..44 e-value: 1.9E-11 score: 45.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 494..524
None	No IPR available	PANTHER	PTHR12357:SF59	30-KDA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30	coord: 1..521
None	No IPR available	PANTHER	PTHR12357	YTH YT521-B HOMOLOGY DOMAIN-CONTAINING	coord: 1..521
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 14..40 e-value: 0.045 score: 22.9 coord: 42..66 e-value: 0.099 score: 21.7
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 14..38 score: 8.117
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 40..67 score: 12.08
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 1..13 score: 6.305
IPR007275	YTH domain	PFAM	PF04146	YTH	coord: 175..309 e-value: 1.8E-42 score: 144.3
IPR007275	YTH domain	PROSITE	PS50882	YTH	coord: 175..310 score: 55.406