CsaV3_1G032280.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G032280.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 19227061 .. 19227276 (-)
Sequence length216
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

mRNA sequence

AGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

Coding sequence (CDS)

AGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

Protein sequence

SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEAQPILLSFCSFF
Homology
[Close]
BLAST of CsaV3_1G032280.1 vs. NCBI nr
Match: KGN65522.1 (hypothetical protein Csa_1G434700 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 2.8e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1   SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA 60
           SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA
Sbjct: 53  SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA 112

Query: 61  QPILLSFCSFF 72
           QPILLSFCSFF
Sbjct: 113 QPILLSFCSFF 123

[Close]
BLAST of CsaV3_1G032280.1 vs. TrEMBL
Match: tr|A0A0A0LXJ3|A0A0A0LXJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434700 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1   SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA 60
           SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA
Sbjct: 53  SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA 112

Query: 61  QPILLSFCSFF 72
           QPILLSFCSFF
Sbjct: 113 QPILLSFCSFF 123

The following BLAST results are available for this feature:
BLAST of CsaV3_1G032280.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65522.12.8e-30100.00hypothetical protein Csa_1G434700 [Cucumis sativus][more]
BLAST of CsaV3_1G032280.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G032280.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G032280.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXJ3|A0A0A0LXJ3_CUCSA1.8e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G032280CsaV3_1G032280gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G032280.1.cds1CsaV3_1G032280.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G032280.1.exon1CsaV3_1G032280.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G032280.1CsaV3_1G032280.1-proteinpolypeptide