CsaV3_1G032280 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G032280
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 19227061 .. 19227276 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

mRNA sequence

AGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

Coding sequence (CDS)

AGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

Protein sequence

SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEAQPILLSFCSFF

Homology

[Close]

BLAST of CsaV3_1G032280 vs. NCBI nr
Match: KGN65522.1 (hypothetical protein Csa_1G434700 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 2.8e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA 60
           SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA
Sbjct: 53  SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA 112

Query: 61  QPILLSFCSFF 72
           QPILLSFCSFF
Sbjct: 113 QPILLSFCSFF 123

[Close]

BLAST of CsaV3_1G032280 vs. TrEMBL
Match: tr|A0A0A0LXJ3|A0A0A0LXJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434700 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA 60
           SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA
Sbjct: 53  SLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEA 112

Query: 61  QPILLSFCSFF 72
           QPILLSFCSFF
Sbjct: 113 QPILLSFCSFF 123

The following BLAST results are available for this feature:

BLAST of CsaV3_1G032280 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65522.1	2.8e-30	100.00	hypothetical protein Csa_1G434700 [Cucumis sativus]	[more]

BLAST of CsaV3_1G032280 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G032280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G032280 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXJ3\|A0A0A0LXJ3_CUCSA	1.8e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434700 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G032280.1	CsaV3_1G032280.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G032280	CsGy1G020710	Cucumber (Gy14) v2	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G032280	Cucumber (Gy14) v1	cgycucB042
CsaV3_1G032280	Wild cucumber (PI 183967)	cpicucB000