CsaV3_1G028170.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028170.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 15274501 .. 15274826 (-)
Sequence length324
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGGTGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGTAGTTTTCCAAACGATTCCTTCTGCGGACATGGATGTGGTTAAGAACATTTGTGCATTGTGA

mRNA sequence

AAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGGTGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGTAGTTTTCCAAACGATTCCTTCTGCGGACATGGATGTGGTTAAGAACATTTGTGCATTGTGA

Coding sequence (CDS)

AAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGGTGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGTAGTTTTCCAAACGATTCCTTCTGCGGACATGGATGTGGTTAAGAACATTTGTGCATTGTGA

Protein sequence

KSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNICAL
Homology
[Close]
BLAST of CsaV3_1G028170.1 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 0 

Query: 1   KSLKASPMKLALVFIVSIAILAASATAGRTVVS--STTLDPSISQDLSFFSCTPFILDAT 60
           KS  AS ++LA+VF+V I ILA S TA RT+    S  L      D SF +C PFIL+AT
Sbjct: 5   KSTSASTIRLAIVFLVCIVILAPSVTA-RTMAEAPSPVLVLFDEDDSSFSNCAPFILEAT 64

Query: 61  LCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNICAL 108
           +C+VDV K P+A HP CCKAI  LNDCAP ++Q IP  DMDV+K IC L
Sbjct: 65  MCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]
BLAST of CsaV3_1G028170.1 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 9.6e-19
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 0 

Query: 1   KSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLC 60
           KSLK   MKL LVFI   AI A  A A +  ++ T   P  ++D+SFF C  F+ +AT C
Sbjct: 4   KSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKC 63

Query: 61  LVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNIC 106
           ++DVFK PIA HP CCKAI KL  C+   F  IPSADM V+K++C
Sbjct: 64  MIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of CsaV3_1G028170.1 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 8   MKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKF 67
           +KL ++F+V IAILA       T    TTLD   ++D++  +CT F  +AT C++DV K 
Sbjct: 5   LKLPIIFLVCIAILALPVMTRTT----TTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 64

Query: 68  PIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNICAL 108
            + PHP CC+AI KLNDC P V++ +PS D  ++K IC L
Sbjct: 65  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

[Close]
BLAST of CsaV3_1G028170.1 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 0 

Query: 1   KSLKASPMKLALVFIVSIAILAASATAGRTVVS--STTLDPSISQDLSFFSCTPFILDAT 60
           KS  AS ++LA+VF+V I ILA S TA RT+    S  L      D SF +C PFIL+AT
Sbjct: 5   KSTSASTIRLAIVFLVCIVILAPSVTA-RTMAEAPSPVLVLFDEDDSSFSNCAPFILEAT 64

Query: 61  LCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNICAL 108
           +C+VDV K P+A HP CCKAI  LNDCAP ++Q IP  DMDV+K IC L
Sbjct: 65  MCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]
BLAST of CsaV3_1G028170.1 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.3e-19
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 0 

Query: 1   KSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLC 60
           KSLK   MKL LVFI   AI A  A A +  ++ T   P  ++D+SFF C  F+ +AT C
Sbjct: 4   KSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKC 63

Query: 61  LVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNIC 106
           ++DVFK PIA HP CCKAI KL  C+   F  IPSADM V+K++C
Sbjct: 64  MIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of CsaV3_1G028170.1 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.2e-15
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 8   MKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKF 67
           +KL ++F+V IAILA       T    TTLD   ++D++  +CT F  +AT C++DV K 
Sbjct: 5   LKLPIIFLVCIAILALPVMTRTT----TTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 64

Query: 68  PIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNICAL 108
            + PHP CC+AI KLNDC P V++ +PS D  ++K IC L
Sbjct: 65  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

The following BLAST results are available for this feature:
BLAST of CsaV3_1G028170.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65190.12.5e-1955.96hypothetical protein Csa_1G263450 [Cucumis sativus][more]
KGN65096.19.6e-1951.43hypothetical protein Csa_1G212820 [Cucumis sativus][more]
KGN65195.11.1e-1445.00hypothetical protein Csa_1G263980 [Cucumis sativus][more]
BLAST of CsaV3_1G028170.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028170.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028170.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA1.7e-1955.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA6.3e-1951.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1[more]
tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA7.2e-1545.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G028170CsaV3_1G028170gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G028170.1.cds1CsaV3_1G028170.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G028170.1.exon1CsaV3_1G028170.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G028170.1CsaV3_1G028170.1-proteinpolypeptide