CsaV3_1G028140.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028140.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 15259823 .. 15260131 (+)
Sequence length309
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTGAAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGGTGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGTAGTTTTCCAAACGATTCCTTCTGCGGACATGGATGTG

mRNA sequence

ATGGCAGTGAAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGGTGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGTAGTTTTCCAAACGATTCCTTCTGCGGACATGGATGTG

Coding sequence (CDS)

ATGGCAGTGAAGTCACTGAAAGCATCCCCAATGAAGTTAGCCTTAGTATTCATTGTCTCCATAGCCATTTTAGCAGCATCCGCGACGGCCGGCCGCACGGTGGTGTCGTCTACAACACTTGATCCATCAATCTCGCAAGATCTCTCCTTCTTCAGTTGTACTCCGTTTATTTTGGATGCGACACTGTGTTTGGTCGATGTATTCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGTAGTTTTCCAAACGATTCCTTCTGCGGACATGGATGTG

Protein sequence

MAVKSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV
Homology
[Close]
BLAST of CsaV3_1G028140.1 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-17
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 0 

Query: 1   MAVKSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDA 60
           MA KSLK   MKL LVFI   AI A  A A +  ++ T   P  ++D+SFF C  F+ +A
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV 104
           T C++DVFK PIA HP CCKAI KL  C+   F  IPSADM V
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIV 103

[Close]
BLAST of CsaV3_1G028140.1 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 58/104 (55.77%), Postives = 70/104 (67.31%), Query Frame = 0 

Query: 2   AVKSLKASPMKLALVFIVSIAILAASATAGRTVVS--STTLDPSISQDLSFFSCTPFILD 61
           A KS  AS ++LA+VF+V I ILA S TA RT+    S  L      D SF +C PFIL+
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTA-RTMAEAPSPVLVLFDEDDSSFSNCAPFILE 62

Query: 62  ATLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV 104
           AT+C+VDV K P+A HP CCKAI  LNDCAP ++Q IP  DMDV
Sbjct: 63  ATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDV 103

[Close]
BLAST of CsaV3_1G028140.1 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 6.3e-12
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 11  MKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKF 70
           +KL ++F+V IAILA       T    TTLD   ++D++  +CT F  +AT C++DV K 
Sbjct: 5   LKLPIIFLVCIAILALPVMTRTT----TTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 64

Query: 71  PIAPHPFCCKAIFKLNDCAPVVFQTIPSAD 101
            + PHP CC+AI KLNDC P V++ +PS D
Sbjct: 65  SMPPHPSCCRAILKLNDCNPEVYKDVPSTD 90

[Close]
BLAST of CsaV3_1G028140.1 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-17
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 0 

Query: 1   MAVKSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDA 60
           MA KSLK   MKL LVFI   AI A  A A +  ++ T   P  ++D+SFF C  F+ +A
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV 104
           T C++DVFK PIA HP CCKAI KL  C+   F  IPSADM V
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIV 103

[Close]
BLAST of CsaV3_1G028140.1 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.6e-17
Identity = 58/104 (55.77%), Postives = 70/104 (67.31%), Query Frame = 0 

Query: 2   AVKSLKASPMKLALVFIVSIAILAASATAGRTVVS--STTLDPSISQDLSFFSCTPFILD 61
           A KS  AS ++LA+VF+V I ILA S TA RT+    S  L      D SF +C PFIL+
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTA-RTMAEAPSPVLVLFDEDDSSFSNCAPFILE 62

Query: 62  ATLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV 104
           AT+C+VDV K P+A HP CCKAI  LNDCAP ++Q IP  DMDV
Sbjct: 63  ATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDV 103

[Close]
BLAST of CsaV3_1G028140.1 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 11  MKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLCLVDVFKF 70
           +KL ++F+V IAILA       T    TTLD   ++D++  +CT F  +AT C++DV K 
Sbjct: 5   LKLPIIFLVCIAILALPVMTRTT----TTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 64

Query: 71  PIAPHPFCCKAIFKLNDCAPVVFQTIPSAD 101
            + PHP CC+AI KLNDC P V++ +PS D
Sbjct: 65  SMPPHPSCCRAILKLNDCNPEVYKDVPSTD 90

The following BLAST results are available for this feature:
BLAST of CsaV3_1G028140.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65096.16.5e-1752.43hypothetical protein Csa_1G212820 [Cucumis sativus][more]
KGN65190.11.5e-1655.77hypothetical protein Csa_1G263450 [Cucumis sativus][more]
KGN65195.16.3e-1245.56hypothetical protein Csa_1G263980 [Cucumis sativus][more]
BLAST of CsaV3_1G028140.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028140.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028140.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA4.3e-1752.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1[more]
tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA9.6e-1755.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA4.2e-1245.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G028140CsaV3_1G028140gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G028140.1.exon1CsaV3_1G028140.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G028140.1.cds1CsaV3_1G028140.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G028140.1CsaV3_1G028140.1-proteinpolypeptide