CsaV3_1G028110.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028110.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 15213735 .. 15214136 (-)
Sequence length238
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTTCATAGCTTATTACCAAACGTTTCCAATTTCCCTATATATCTAACCTCCTTAGTCCTTCTTTCTCCCAAACAAACCAAACAGGACTATTGATTCTTAGAGAAATTAAGAACCTCCTTATTCAATCCTTTCTAATTCATACTCAATTTTAGTACCAACAAATGGCAACATCAGCAATAACCAAGTTACCACTAGTTCTCCTAGTGTGCATTGCCATTTTAGCATCATCCGTAACGGCTCGTCCAGCAGCAGCAGCAACACCCCCATCGTTGGAGGATTTCTCTTTGTTTCCTTGCATATCATTCGTTCCTAAGGCAACAATATGTGTGATTGATGTGCTTAAAAATGCAGTTTCTCCTCATCCTTCATGTTGTGAAGCCATCTCTAAACTTCATGATT

mRNA sequence

ATGGCAACATCAGCAATAACCAAGTTACCACTAGTTCTCCTAGTGTGCATTGCCATTTTAGCATCATCCGTAACGGCTCGTCCAGCAGCAGCAGCAACACCCCCATCGTTGGAGGATTTCTCTTTGTTTCCTTGCATATCATTCGTTCCTAAGGCAACAATATGTGTGATTGATGTGCTTAAAAATGCAGTTTCTCCTCATCCTTCATGTTGTGAAGCCATCTCTAAACTTCATGATT

Coding sequence (CDS)

ATGGCAACATCAGCAATAACCAAGTTACCACTAGTTCTCCTAGTGTGCATTGCCATTTTAGCATCATCCGTAACGGCTCGTCCAGCAGCAGCAGCAACACCCCCATCGTTGGAGGATTTCTCTTTGTTTCCTTGCATATCATTCGTTCCTAAGGCAACAATATGTGTGATTGATGTGCTTAAAAATGCAGTTTCTCCTCATCCTTCATGTTGTGAAGCCATCTCTAAACTTCATGATT

Protein sequence

MATSAITKLPLVLLVCIAILASSVTARPAAAATPPSLEDFSLFPCISFVPKATICVIDVLKNAVSPHPSCCEAISKLHDX
Homology
[Close]
BLAST of CsaV3_1G028110.1 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-09
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 0 

Query: 2  ATSAIT-KLPLVLLVCIAILASSVTARPAAAATPPSL-----EDFSLFPCISFVPKATIC 61
          +TSA T +L +V LVCI ILA SVTAR  A A  P L     +D S   C  F+ +AT+C
Sbjct: 6  STSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMC 65

Query: 62 VIDVLKNAVSPHPSCCEAISKLHD 80
          V+DV+K  V+ HPSCC+AIS L+D
Sbjct: 66 VVDVIKLPVASHPSCCKAISDLND 89

[Close]
BLAST of CsaV3_1G028110.1 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 8  KLPLVLLVCIAILASSVTARPAAAA----TPPSLEDFSLFPCISFVPKATICVIDVLKNA 67
          KL LV + C AI A    A   A A     P   ED S FPC SFVP+AT C+IDV K+ 
Sbjct: 12 KLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFKHP 71

Query: 68 VSPHPSCCEAISKL 78
          ++ HP+CC+AISKL
Sbjct: 72 IAAHPTCCKAISKL 85

[Close]
BLAST of CsaV3_1G028110.1 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 3.3e-08
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 5  AITKLPLVLLVCIAILASSVTARPAAAATPPSLEDFSLFPCISFVPKATICVIDVLKNAV 64
          A  KLP++ LVCIAILA  V  R        S +D +   C  F  +AT C+IDV+KN++
Sbjct: 3  ASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNSM 62

Query: 65 SPHPSCCEAISKLHD 80
           PHPSCC AI KL+D
Sbjct: 63 PPHPSCCRAILKLND 77

[Close]
BLAST of CsaV3_1G028110.1 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-09
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 0 

Query: 2  ATSAIT-KLPLVLLVCIAILASSVTARPAAAATPPSL-----EDFSLFPCISFVPKATIC 61
          +TSA T +L +V LVCI ILA SVTAR  A A  P L     +D S   C  F+ +AT+C
Sbjct: 6  STSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMC 65

Query: 62 VIDVLKNAVSPHPSCCEAISKLHD 80
          V+DV+K  V+ HPSCC+AIS L+D
Sbjct: 66 VVDVIKLPVASHPSCCKAISDLND 89

[Close]
BLAST of CsaV3_1G028110.1 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 8  KLPLVLLVCIAILASSVTARPAAAA----TPPSLEDFSLFPCISFVPKATICVIDVLKNA 67
          KL LV + C AI A    A   A A     P   ED S FPC SFVP+AT C+IDV K+ 
Sbjct: 12 KLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFKHP 71

Query: 68 VSPHPSCCEAISKL 78
          ++ HP+CC+AISKL
Sbjct: 72 IAAHPTCCKAISKL 85

[Close]
BLAST of CsaV3_1G028110.1 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 5  AITKLPLVLLVCIAILASSVTARPAAAATPPSLEDFSLFPCISFVPKATICVIDVLKNAV 64
          A  KLP++ LVCIAILA  V  R        S +D +   C  F  +AT C+IDV+KN++
Sbjct: 3  ASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNSM 62

Query: 65 SPHPSCCEAISKLHD 80
           PHPSCC AI KL+D
Sbjct: 63 PPHPSCCRAILKLND 77

The following BLAST results are available for this feature:
BLAST of CsaV3_1G028110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65190.13.9e-0952.38hypothetical protein Csa_1G263450 [Cucumis sativus][more]
KGN65096.11.9e-0851.35hypothetical protein Csa_1G212820 [Cucumis sativus][more]
KGN65195.13.3e-0849.33hypothetical protein Csa_1G263980 [Cucumis sativus][more]
BLAST of CsaV3_1G028110.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028110.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028110.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA2.6e-0952.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA1.3e-0851.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1[more]
tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA2.2e-0849.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G028110CsaV3_1G028110gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G028110.1.cds1CsaV3_1G028110.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G028110.1.exon1CsaV3_1G028110.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G028110.1CsaV3_1G028110.1-proteinpolypeptide