CsaV3_1G028080.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028080.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 15020486 .. 15020836 (-)
Sequence length351
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGAAATCACTAAAAACACCTACAATGAAGCTAATCCTCGTATTCATATGCTGTACAGCCATTTTCGCACCACCAGCGGCGGCGATGAAGGTCGCAATGGCGCCAACACAACCTCAACCATTCCCAACAGAGGATATCTCTTTTTTCCCCTGCTTTTCGTTTGTTCCAGAGGCGACGAAATGTATGATCGATGTGTTTAAACACCCAATTGCTGCTCACCCCACTTGTTGCAAGGCCATTTCGAAGCTCAAAAGTTGTTCCTCTTCGTTTTTTAATGGAATTCCTTCTGCTGATATGATTGTGATTAAGAGTGTTTGTACTTCGTGGGGCGCTTCAATTTCTTAG

mRNA sequence

ATGGCGGCGAAATCACTAAAAACACCTACAATGAAGCTAATCCTCGTATTCATATGCTGTACAGCCATTTTCGCACCACCAGCGGCGGCGATGAAGGTCGCAATGGCGCCAACACAACCTCAACCATTCCCAACAGAGGATATCTCTTTTTTCCCCTGCTTTTCGTTTGTTCCAGAGGCGACGAAATGTATGATCGATGTGTTTAAACACCCAATTGCTGCTCACCCCACTTGTTGCAAGGCCATTTCGAAGCTCAAAAGTTGTTCCTCTTCGTTTTTTAATGGAATTCCTTCTGCTGATATGATTGTGATTAAGAGTGTTTGTACTTCGTGGGGCGCTTCAATTTCTTAG

Coding sequence (CDS)

ATGGCGGCGAAATCACTAAAAACACCTACAATGAAGCTAATCCTCGTATTCATATGCTGTACAGCCATTTTCGCACCACCAGCGGCGGCGATGAAGGTCGCAATGGCGCCAACACAACCTCAACCATTCCCAACAGAGGATATCTCTTTTTTCCCCTGCTTTTCGTTTGTTCCAGAGGCGACGAAATGTATGATCGATGTGTTTAAACACCCAATTGCTGCTCACCCCACTTGTTGCAAGGCCATTTCGAAGCTCAAAAGTTGTTCCTCTTCGTTTTTTAATGGAATTCCTTCTGCTGATATGATTGTGATTAAGAGTGTTTGTACTTCGTGGGGCGCTTCAATTTCTTAG

Protein sequence

MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS
Homology
[Close]
BLAST of CsaV3_1G028080.1 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 2.3e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60
           MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 117
           TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]
BLAST of CsaV3_1G028080.1 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 4.5e-14
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 0 

Query: 2   AAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQP-FPTEDISFFPCFSFVPEA 61
           A KS    T++L +VF+ C  I AP   A  +A AP+     F  +D SF  C  F+ EA
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEA 62

Query: 62  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 109
           T C++DV K P+A+HP+CCKAIS L  C+   +  IP  DM VIK +C
Sbjct: 63  TMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 108

[Close]
BLAST of CsaV3_1G028080.1 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 8.5e-13
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 0 

Query: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69
           ++KL ++F+ C AI A P     +    T    F T+D++   C  F  EATKCMIDV K
Sbjct: 4   SLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 63

Query: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGA 114
           + +  HP+CC+AI KL  C+   +  +PS D  +IK +C  WGA
Sbjct: 64  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

[Close]
BLAST of CsaV3_1G028080.1 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60
           MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 117
           TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]
BLAST of CsaV3_1G028080.1 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.0e-14
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 0 

Query: 2   AAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQP-FPTEDISFFPCFSFVPEA 61
           A KS    T++L +VF+ C  I AP   A  +A AP+     F  +D SF  C  F+ EA
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEA 62

Query: 62  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 109
           T C++DV K P+A+HP+CCKAIS L  C+   +  IP  DM VIK +C
Sbjct: 63  TMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 108

[Close]
BLAST of CsaV3_1G028080.1 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 0 

Query: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69
           ++KL ++F+ C AI A P     +    T    F T+D++   C  F  EATKCMIDV K
Sbjct: 4   SLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 63

Query: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGA 114
           + +  HP+CC+AI KL  C+   +  +PS D  +IK +C  WGA
Sbjct: 64  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

The following BLAST results are available for this feature:
BLAST of CsaV3_1G028080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65096.12.3e-58100.00hypothetical protein Csa_1G212820 [Cucumis sativus][more]
KGN65190.14.5e-1444.44hypothetical protein Csa_1G263450 [Cucumis sativus][more]
KGN65195.18.5e-1340.38hypothetical protein Csa_1G263980 [Cucumis sativus][more]
BLAST of CsaV3_1G028080.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028080.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028080.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA1.5e-58100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1[more]
tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA3.0e-1444.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA5.6e-1340.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G028080CsaV3_1G028080gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G028080.1.cds1CsaV3_1G028080.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G028080.1.exon1CsaV3_1G028080.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G028080.1CsaV3_1G028080.1-proteinpolypeptide