CsaV3_1G013620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 8918617 .. 8918973 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGAAGAAGGAAGAGTCATTTGGAGCAAAGAGATTCTTGATCAAAACTAGAGAAAGAGATAACAAGGAGCCAGAGAGTCTGATACAAAAGAATGTGAAAAAAGGATTTGACAGTAGTGTGCAATGTAATGAAAATGAAGGAGAAATTGAAGGAGTGAGTCCAATTTTGAGAGTACGTGTGAAGATGAAACTTTCTCCTCAAAACCACTTATATATTTGAGACTATACATAAAAAAAGCTTGTTATTAACTAGGTGGAGTTAATCTTAGAGTATTATGTAGTACTACTTCTTTCAATTTATTTTGTAGGACTTGCACTCGTGAAGGAGCAATGTTACTCACATGTAATGTAG

mRNA sequence

ATGGCGATGAAGAAGGAAGAGTCATTTGGAGCAAAGAGATTCTTGATCAAAACTAGAGAAAGAGATAACAAGGAGCCAGAGAGTCTGATACAAAAGAATGTGAAAAAAGGATTTGACAGTAGTGTGCAATGTAATGAAAATGAAGGAGAAATTGAAGGAGTGAGTCCAATTTTGAGAGTACGACTTGCACTCGTGAAGGAGCAATGTTACTCACATGTAATGTAG

Coding sequence (CDS)

ATGGCGATGAAGAAGGAAGAGTCATTTGGAGCAAAGAGATTCTTGATCAAAACTAGAGAAAGAGATAACAAGGAGCCAGAGAGTCTGATACAAAAGAATGTGAAAAAAGGATTTGACAGTAGTGTGCAATGTAATGAAAATGAAGGAGAAATTGAAGGAGTGAGTCCAATTTTGAGAGTACGACTTGCACTCGTGAAGGAGCAATGTTACTCACATGTAATGTAG

Protein sequence

MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRVRLALVKEQCYSHVM
Homology
[Close]
BLAST of CsaV3_1G013620 vs. NCBI nr
Match: KGN64815.1 (hypothetical protein Csa_1G110870 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV 60
          MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV
Sbjct: 1  MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV 60

Query: 61 RLALVKEQCYSHVM 75
          RLALVKEQCYSHVM
Sbjct: 61 RLALVKEQCYSHVM 74

[Close]
BLAST of CsaV3_1G013620 vs. TrEMBL
Match: tr|A0A0A0LSC1|A0A0A0LSC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G110870 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV 60
          MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV
Sbjct: 1  MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV 60

Query: 61 RLALVKEQCYSHVM 75
          RLALVKEQCYSHVM
Sbjct: 61 RLALVKEQCYSHVM 74

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64815.11.8e-32100.00hypothetical protein Csa_1G110870 [Cucumis sativus][more]
BLAST of CsaV3_1G013620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSC1|A0A0A0LSC1_CUCSA1.2e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G110870 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G013620.1CsaV3_1G013620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G013620CsGy1G013530Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G013620Wax gourdcucwgoB017
CsaV3_1G013620Wax gourdcucwgoB051
CsaV3_1G013620Cucumber (Chinese Long) v3cuccucB021
CsaV3_1G013620Silver-seed gourdcarcucB0363
CsaV3_1G013620Silver-seed gourdcarcucB0474
CsaV3_1G013620Silver-seed gourdcarcucB1116
CsaV3_1G013620Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G013620Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G013620Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G013620Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G013620Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G013620Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G013620Wild cucumber (PI 183967)cpicucB001
CsaV3_1G013620Bottle gourd (USVL1VR-Ls)cuclsiB048
CsaV3_1G013620Bottle gourd (USVL1VR-Ls)cuclsiB054
CsaV3_1G013620Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G013620Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G013620Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G013620Watermelon (97103) v1cucwmB015
CsaV3_1G013620Watermelon (97103) v2cucwmbB032