CsaV3_1G010050.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCACTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAGAGAAGATCTTCTGGTAAGCCATTTGCTCTCTGTCATTCTATTAATTTTTCACCATCTCTAGACTCTAATTTTGACGATATTTAGAATATAGCGGATGATTGAGTCAAGCAATTTGTTGATCATAAGCAGACAGACCTTACAATGCATTTATAAGGATTCAGCAACTTTATCACGGGATAGTCTACTGCATGATCTATTAAAGTGCATATAAAATTGGGAAGCTTGGTATCAATTATCTGATTGGTAATATTGAATTCTTTTTACTTCTTTGTATTGTGTTGTATAGTTAATTAGCAGAGTAGTTTTGTGACATTTGCTGCCATTTCATTTCAAAAGCTAGACCACATAAAGTAATTCCACACAAAAGGATTAGCATTTAAGCTAGTTAAACTATAAGCTAAAAATAAAGGGCAAGCTTCTAAACCATGTCATTCTCCCTCAACAAAGTGTAATTTCTGCATCCTTCTTGCAACTTGAATTGATATAATTGAAAGCTTAAAGCTTAGATAGCATGTAGCTAGAAGGAGAAGAGAAAGAAGAATAACAAAAACAGATATTATGGATTGTTTATGTTTAAGTGAGCATGGATAAGACAGGTTAAAGTTGATGGATTATGATAAATTTGATAGATAAGTAGTGACATTTTCTCTTGTTCAGCTTCAACAAATTTTCAAGTTTACAATGGAGGGAAAATATTTCATAACTCATCAACTTATGCGTATAACATGATTAGCGATTCAATAGCTTTTAAATTTTAGTTACTTTTCTTATATAGCTGGGTGCTAATCTAAGAGTTCAAAATCTTGCAGTATCAGGTTCCTTTCCTGGAGAA ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCACTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAG ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCACTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAG MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRVSELLNRIITNWID
BLAST of CsaV3_1G010050.1 vs. NCBI nr
Match: XP_004154059.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus] >XP_011652353.1 PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus] >KGN64453.1 hypothetical protein Csa_1G051900 [Cucumis sativus]) HSP 1 Score: 497.7 bits (1280), Expect = 2.4e-137 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
BLAST of CsaV3_1G010050.1 vs. NCBI nr
Match: XP_023520260.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 350.9 bits (899), Expect = 3.7e-93 Identity = 189/258 (73.26%), Postives = 216/258 (83.72%), Query Frame = 0
BLAST of CsaV3_1G010050.1 vs. NCBI nr
Match: XP_022923926.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata] >XP_022923927.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata] >XP_022923928.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 347.8 bits (891), Expect = 3.1e-92 Identity = 189/258 (73.26%), Postives = 214/258 (82.95%), Query Frame = 0
BLAST of CsaV3_1G010050.1 vs. NCBI nr
Match: XP_023000755.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima] >XP_023000756.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima] >XP_023000757.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 347.8 bits (891), Expect = 3.1e-92 Identity = 188/258 (72.87%), Postives = 216/258 (83.72%), Query Frame = 0
BLAST of CsaV3_1G010050.1 vs. NCBI nr
Match: XP_022137315.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Momordica charantia]) HSP 1 Score: 329.7 bits (844), Expect = 8.8e-87 Identity = 182/247 (73.68%), Postives = 205/247 (83.00%), Query Frame = 0
BLAST of CsaV3_1G010050.1 vs. TrEMBL
Match: tr|A0A0A0LRQ9|A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051900 PE=4 SV=1) HSP 1 Score: 497.7 bits (1280), Expect = 1.6e-137 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
BLAST of CsaV3_1G010050.1 vs. TrEMBL
Match: tr|M5WIJ3|M5WIJ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G119000 PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 8.5e-54 Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 0
BLAST of CsaV3_1G010050.1 vs. TrEMBL
Match: tr|A0A2N9FI41|A0A2N9FI41_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14657 PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 8.5e-54 Identity = 132/260 (50.77%), Postives = 170/260 (65.38%), Query Frame = 0
BLAST of CsaV3_1G010050.1 vs. TrEMBL
Match: tr|A0A2P6Q7I4|A0A2P6Q7I4_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0021391 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51 Identity = 119/231 (51.52%), Postives = 151/231 (65.37%), Query Frame = 0
BLAST of CsaV3_1G010050.1 vs. TrEMBL
Match: tr|A0A1Q3C446|A0A1Q3C446_CEPFO (PPR domain-containing protein/PPR_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18526 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.8e-51 Identity = 117/226 (51.77%), Postives = 155/226 (68.58%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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