CsaV3_1G007280 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G007280
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 4605690 .. 4605923 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTTGTGAAGCGAAGTCTTGTGAATGGACATCACAACAGAGCTCTCATCATAGAAAAAAGAACATCTCAATTTGAACACAGATCAAAAGTTGCATCAGAAGCAAAAGCAAAAGCCAAAAGCCAAAAAGTAAAGGCAAAGGCAGTAATTAATTACATCACCCACCCAACCCAACAACAACAAAATACAACAAGCTATGACAATTTATCATCCACCCCAAGTATTGACTAA

mRNA sequence

ATGAGATTTGTGAAGCGAAGTCTTGTGAATGGACATCACAACAGAGCTCTCATCATAGAAAAAAGAACATCTCAATTTGAACACAGATCAAAAGTTGCATCAGAAGCAAAAGCAAAAGCCAAAAGCCAAAAAGTAAAGGCAAAGGCAGTAATTAATTACATCACCCACCCAACCCAACAACAACAAAATACAACAAGCTATGACAATTTATCATCCACCCCAAGTATTGACTAA

Coding sequence (CDS)

ATGAGATTTGTGAAGCGAAGTCTTGTGAATGGACATCACAACAGAGCTCTCATCATAGAAAAAAGAACATCTCAATTTGAACACAGATCAAAAGTTGCATCAGAAGCAAAAGCAAAAGCCAAAAGCCAAAAAGTAAAGGCAAAGGCAGTAATTAATTACATCACCCACCCAACCCAACAACAACAAAATACAACAAGCTATGACAATTTATCATCCACCCCAAGTATTGACTAA

Protein sequence

MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAKAKAKSQKVKAKAVINYITHPTQQQQNTTSYDNLSSTPSID
BLAST of CsaV3_1G007280 vs. NCBI nr
Match: KGN64186.1 (hypothetical protein Csa_1G042935 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 3.8e-25
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAXXXXXXXXXXXXXVINYITHPTQQ 60
          MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAXXXXXXXXXXXXXVINYITHPTQQ
Sbjct: 1  MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAXXXXXXXXXXXXXVINYITHPTQQ 60

Query: 61 QQNTTSYDNLSSTPSID 78
          QQNTTSYDNLSSTPSID
Sbjct: 61 QQNTTSYDNLSSTPSID 77

BLAST of CsaV3_1G007280 vs. TrEMBL
Match: tr|A0A0A0LVW8|A0A0A0LVW8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042935 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-25
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAXXXXXXXXXXXXXVINYITHPTQQ 60
          MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAXXXXXXXXXXXXXVINYITHPTQQ
Sbjct: 1  MRFVKRSLVNGHHNRALIIEKRTSQFEHRSKVASEAXXXXXXXXXXXXXVINYITHPTQQ 60

Query: 61 QQNTTSYDNLSSTPSID 78
          QQNTTSYDNLSSTPSID
Sbjct: 61 QQNTTSYDNLSSTPSID 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64186.13.8e-25100.00hypothetical protein Csa_1G042935 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LVW8|A0A0A0LVW8_CUCSA2.5e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042935 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G007280.1CsaV3_1G007280.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..77

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None