MELO3C035467.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035467.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	girdin-like
Location	chr12 : 16432428 .. 16432828 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTTTGGAATCCAACATATCCAAGGAAGGAGGTTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCGGTGATATATAGATGTGGAGATTTTCACAGTGTGCCTTTATTGGGACCATAGGGAGGTGTTAACTATACACTATTATGTTAGTTTTGCATCAGGTGTGGCTCAAATAGTTTATACCACCAAACTCATAATCTGCAAGAGTCTGACTTTTCATACGATCCTGAAGATTGTCAAGGGAAAAAATATCGAGCAGTATGCACTGGAAATCTGTAAAGAAGATAAAAGACAAAGGACGTTATGAAGGATACGAGGCATGGCAGGCAAACAGAAGGAAGAATATAATAGTTATCTCA

mRNA sequence

ATGAGAGTTTGGAATCCAACATATCCAAGGAAGGAGGTTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCGGTGATATATAGATGTGGAGATTTTCACAGTGTGCCTTTATTGGGACCATAGGGAGGTGTTAACTATACACTATTATGTTAGTTTTGCATCAGGTGTGGCTCAAATAGTTTATACCACCAAACTCATAATCTGCAAGAGTCTGACTTTTCATACGATCCTGAAGATTGTCAAGGGAAAAAATATCGAGCAGTATGCACTGGAAATCTGTAAAGAAGATAAAAGACAAAGGACGTTATGAAGGATACGAGGCATGGCAGGCAAACAGAAGGAAGAATATAATAGTTATCTCA

Coding sequence (CDS)

ATGAGAGTTTGGAATCCAACATATCCAAGGAAGGAGGTTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCGGTGATATATAGATGTGGAGATTTTCACAGTGTGCCTTTATTGGGACCATAG

Protein sequence

MRVWNPTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP

Homology

[Close]

BLAST of MELO3C035467.2 vs. NCBI nr
Match: XP_022150759.1 (uncharacterized protein LOC111018820 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-10
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 4   WNPTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP 54
           W+  +P KE W  FFA L SE+V W+A+WM  K ++YRCG FHS+PLLGP
Sbjct: 188 WSQIHPGKEEWSIFFAGLRSEDVEWRARWMSTKPMMYRCGKFHSLPLLGP 237

[Close]

BLAST of MELO3C035467.2 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 4   WNPTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP 54
           W+  +P KE W  FFA L  E+V W+A+WM  K ++YRCG FHS+ LLGP
Sbjct: 296 WSQIHPGKEEWSIFFAGLRPEDVEWRARWMSTKPMMYRCGKFHSLSLLGP 345

[Close]

BLAST of MELO3C035467.2 vs. NCBI nr
Match: EOY18263.1 (Uncharacterized protein TCM_042849 [Theobroma cacao])

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-06
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 2  RVWNPTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP 54
          R W P Y RKE W++   +L S  V W+A WMP   V+Y+CGD   VPL+GP
Sbjct: 6  REW-PDYKRKEEWVTRLRRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGP 56

[Close]

BLAST of MELO3C035467.2 vs. NCBI nr
Match: EOY24501.1 (Uncharacterized protein TCM_016087 [Theobroma cacao])

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-06
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 6   PTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP 54
           P Y RKE W++   +L S  V W+A WMP   V+Y+CGD   VPL+GP
Sbjct: 238 PDYKRKEEWVARLRRLMSIEVTWRAPWMPRMQVMYKCGDKSWVPLMGP 285

[Close]

BLAST of MELO3C035467.2 vs. NCBI nr
Match: EOX92985.1 (Uncharacterized protein TCM_001845 [Theobroma cacao])

HSP 1 Score: 58.9 bits (141), Expect = 5.9e-06
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 6   PTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP 54
           P Y RKE W++   +L S  V W+A WMP   V+Y+CGD   VPL+GP
Sbjct: 292 PDYKRKEEWVARLQRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGP 339

[Close]

BLAST of MELO3C035467.2 vs. TrEMBL
Match: tr|A0A061FN02|A0A061FN02_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_042849 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 2  RVWNPTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP 54
          R W P Y RKE W++   +L S  V W+A WMP   V+Y+CGD   VPL+GP
Sbjct: 6  REW-PDYKRKEEWVTRLRRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGP 56

[Close]

BLAST of MELO3C035467.2 vs. TrEMBL
Match: tr|A0A061G4J9|A0A061G4J9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_016087 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 6   PTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP 54
           P Y RKE W++   +L S  V W+A WMP   V+Y+CGD   VPL+GP
Sbjct: 238 PDYKRKEEWVARLRRLMSIEVTWRAPWMPRMQVMYKCGDKSWVPLMGP 285

[Close]

BLAST of MELO3C035467.2 vs. TrEMBL
Match: tr|A0A061ENZ4|A0A061ENZ4_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019321 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-06
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 6   PTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP 54
           P Y RKE W++   +L S  V W+A WMP   V+Y+CGD   VPL+GP
Sbjct: 202 PDYKRKEEWVTRLRRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGP 249

[Close]

BLAST of MELO3C035467.2 vs. TrEMBL
Match: tr|A0A061FA16|A0A061FA16_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032599 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-06
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 6   PTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP 54
           P Y +KE W++   +L S  V W+A WMP   VIY+CGD   VPL+GP
Sbjct: 236 PDYKKKEEWVARLRRLMSIEVTWRAPWMPRMQVIYKCGDKPWVPLMGP 283

[Close]

BLAST of MELO3C035467.2 vs. TrEMBL
Match: tr|A0A061DK15|A0A061DK15_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001845 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-06
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 6   PTYPRKEVWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP 54
           P Y RKE W++   +L S  V W+A WMP   V+Y+CGD   VPL+GP
Sbjct: 292 PDYKRKEEWVARLQRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGP 339

The following BLAST results are available for this feature:

BLAST of MELO3C035467.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150759.1	4.0e-10	58.00	uncharacterized protein LOC111018820 [Momordica charantia]	[more]
XP_022147190.1	1.3e-08	54.00	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
EOY18263.1	3.5e-06	50.00	Uncharacterized protein TCM_042849 [Theobroma cacao]	[more]
EOY24501.1	4.6e-06	50.00	Uncharacterized protein TCM_016087 [Theobroma cacao]	[more]
EOX92985.1	5.9e-06	50.00	Uncharacterized protein TCM_001845 [Theobroma cacao]	[more]

BLAST of MELO3C035467.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035467.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035467.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061FN02\|A0A061FN02_THECC	2.3e-06	50.00	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_042849 PE=4 SV=1	[more]
tr\|A0A061G4J9\|A0A061G4J9_THECC	3.0e-06	50.00	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_016087 PE=4 SV=1	[more]
tr\|A0A061ENZ4\|A0A061ENZ4_THECC	3.9e-06	50.00	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019321 PE=4 SV=1	[more]
tr\|A0A061FA16\|A0A061FA16_THECC	3.9e-06	50.00	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032599 PE=4 SV=1	[more]
tr\|A0A061DK15\|A0A061DK15_THECC	3.9e-06	50.00	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001845 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035467.2.1	MELO3C035467.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035467.2	Cucumber (Chinese Long) v3	cucmedB011
MELO3C035467.2	Watermelon (97103) v2	medwmbB131
MELO3C035467.2	Wax gourd	medwgoB167
MELO3C035467.2	Cucumber (Gy14) v2	cgybmedB011
MELO3C035467.2	Cucumber (Gy14) v1	cgymedB544
MELO3C035467.2	Cucurbita maxima (Rimu)	cmamedB213
MELO3C035467.2	Cucurbita maxima (Rimu)	cmamedB423
MELO3C035467.2	Watermelon (97103) v1	medwmB160
MELO3C035467.2	Cucurbita moschata (Rifu)	cmomedB201
MELO3C035467.2	Cucurbita moschata (Rifu)	cmomedB409
MELO3C035467.2	Cucurbita pepo (Zucchini)	cpemedB032
MELO3C035467.2	Cucurbita pepo (Zucchini)	cpemedB562
MELO3C035467.2	Wild cucumber (PI 183967)	cpimedB013
MELO3C035467.2	Wild cucumber (PI 183967)	cpimedB022
MELO3C035467.2	Cucumber (Chinese Long) v2	cumedB012
MELO3C035467.2	Bottle gourd (USVL1VR-Ls)	lsimedB190
MELO3C035467.2	Watermelon (Charleston Gray)	medwcgB132
MELO3C035467.2	Watermelon (97103) v1	medwmB151
MELO3C035467.2	Silver-seed gourd	carmedB0122