MELO3C033254.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C033254.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionzinc finger BED domain-containing protein RICESLEEPER 2-like
Locationchr08 : 15582764 .. 15583792 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGAGATATTTTGGTTATTCCAGTTTCTACTGTAGCATCAGAGTCGGCTTTTAGTACTGGAGGACGTGTTGTTGACTCATCACGCTGCTCATTGGCTCCTAAAACAGTGGAGGCTCTCATATGTACTCAAAATTGGCTAAATTCTGATCCAATACATCTTCAATTTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGGTATTTTCAAATCTTTACATGATATCTTTTGTAGTCGTAATGTGTAACTTTAGTGAAATCTTAAATTATTTAGTAAATTCTTCATATTGATTATATAGGATTCCGGGTGGTTATGGAGAATGAAAAGGAGCTTCAAGACCTTCTAGATTTTGATAAGTTGTCAATTACCGATTAAGCGATTATTAACTAATTCTGATCCAAGACTTGTAATATTTCTATTGACTAGATTATCATAGTGTTTTTGTTTTATACTTTGGTTGTATTTGTGACTCTTAATAGTAATGTGGTGAAGTGAATTGAACTTGGATGTTTCTAACCCTATAATATTTGATATATATTTCATTTTGGTAGTATGTTTAGATTCTTATTTTTATTTTGTTTATTTTATTAATTTGTGTAATACCTATGAACTAAGCATTGAAATTAATAGAACTTGATTTTATTTTTTAATCACAATTATATGATTTTAAGACAATATAGAATATATATCGTAGACTTTTCTATTGAAATTAAAAAGTGAAATAAAACATAATAACGTCATTCTTAGTTTTTAAAATCGTTTGTTTATCAAAAAGAAAGCAAGAAACATAGAAAAGGAAGGAGGAGGAGGAGAAGAAACAGGAAAGAAAGAAAGAAGGAGAGGAAAAAAAAGTAAGAAAACTGATCGACCCGACCCGACCCGACCCGGCTGCCGGTTGGACCGGCTGATTTTGTTAGAACCGGCGGACGAGGCCGGTTTTCCAACTTCCATGCCGACTTGCAGTCGGTTCGGGGCATTTTGGTCGGAAAACCAACCCCGACCACCCAATGCTCACCCCTAA

mRNA sequence

ATGGCTAGAGATATTTTGGTTATTCCAGTTTCTACTGTAGCATCAGAGTCGGCTTTTAGTACTGGAGGACGTGTTGTTGACTCATCACGCTGCTCATTGGCTCCTAAAACAGTGGAGGCTCTCATATGTACTCAAAATTGGCTAAATTCTGATCCAATACATCTTCAATTTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGGATTCCGGGTGAAAGCAAGAAACATAGAAAAGGAAGGAGGAGGAGGAGAAGAAACAGGAAAGAAAGAAAGAAGGAGAGGAAAAAAAAGTAAGAAAACTGATCGACCCGACCCGACCCGACCCGGCTGCCGGTTGGACCGGCTGATTTTGTTAGAACCGGCGGACGAGGCCGGTTTTCCAACTTCCATGCCGACTTGCAGTCGGTTCGGGGCATTTTGGTCGGAAAACCAACCCCGACCACCCAATGCTCACCCCTAA

Coding sequence (CDS)

ATGGCTAGAGATATTTTGGTTATTCCAGTTTCTACTGTAGCATCAGAGTCGGCTTTTAGTACTGGAGGACGTGTTGTTGACTCATCACGCTGCTCATTGGCTCCTAAAACAGTGGAGGCTCTCATATGTACTCAAAATTGGCTAAATTCTGATCCAATACATCTTCAATTTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGGATTCCGGGTGAAAGCAAGAAACATAGAAAAGGAAGGAGGAGGAGGAGAAGAAACAGGAAAGAAAGAAAGAAGGAGAGGAAAAAAAAGTAAGAAAACTGATCGACCCGACCCGACCCGACCCGGCTGCCGGTTGGACCGGCTGATTTTGTTAGAACCGGCGGACGAGGCCGGTTTTCCAACTTCCATGCCGACTTGCAGTCGGTTCGGGGCATTTTGGTCGGAAAACCAACCCCGACCACCCAATGCTCACCCCTAA

Protein sequence

MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHELEEASKFEEGFRVKARNIEKEGGGGEETGKKERRRGKKSKKTDRPDPTRPGCRLDRLILLEPADEAGFPTSMPTCSRFGAFWSENQPRPPNAHP
BLAST of MELO3C033254.2 vs. NCBI nr
Match: ADN33918.1 (transposase [Cucumis melo subsp. melo])

HSP 1 Score: 131.7 bits (330), Expect = 2.1e-27
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHE 60
           MARDIL I VSTVASES FSTGGRVVDSS CSLAPKTVEALICTQNWLN DPIHLQFQHE
Sbjct: 152 MARDILAISVSTVASESTFSTGGRVVDSSHCSLAPKTVEALICTQNWLNFDPIHLQFQHE 211

Query: 61  LEEASKFEEGFRVKARNIEKE 82
           L+EASKFE+ FRV   N EKE
Sbjct: 212 LKEASKFEKAFRVVMEN-EKE 231

BLAST of MELO3C033254.2 vs. NCBI nr
Match: XP_016901224.1 (PREDICTED: uncharacterized protein LOC107991203 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 2.1e-27
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHE 60
           MARDIL I VSTVASES FSTGGRVVDSS CSLAPKTVEALICTQNWLN DPIHLQFQHE
Sbjct: 127 MARDILAISVSTVASESTFSTGGRVVDSSHCSLAPKTVEALICTQNWLNFDPIHLQFQHE 186

Query: 61  LEEASKFEEGFRVKARNIEKE 82
           L+EASKFE+ FRV   N EKE
Sbjct: 187 LKEASKFEKAFRVVMEN-EKE 206

BLAST of MELO3C033254.2 vs. NCBI nr
Match: XP_016901938.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHE 60
           MARDIL IP STVASESAF+TGGRVVDSS CSLAPKTVE LICTQNWLNSDPI LQ Q E
Sbjct: 243 MARDILAIPDSTVASESAFNTGGRVVDSSCCSLAPKTVETLICTQNWLNSDPIDLQIQDE 302

Query: 61  LEEASKFEEGFRVKARNIEKE 82
           LE+ASKF+E FRV   N EKE
Sbjct: 303 LEKASKFKERFRVVMEN-EKE 322

BLAST of MELO3C033254.2 vs. NCBI nr
Match: XP_016903504.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 9.8e-17
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQH- 60
           ++RDIL IPVST++SES F+ GG VV+S+RCS+APK +EALICT+NWLNS PI+L+  + 
Sbjct: 273 ISRDILAIPVSTISSESTFNIGGCVVNSNRCSVAPKMMEALICTRNWLNSSPINLEIHNQ 332

Query: 61  ELEEASKFEEGFR 73
           +LEE  +FEEGFR
Sbjct: 333 DLEEDLRFEEGFR 345

BLAST of MELO3C033254.2 vs. NCBI nr
Match: XP_011652627.1 (PREDICTED: uncharacterized protein LOC105435038 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQH- 60
           ++RDIL IPVSTV+SES F+ GG VV+S+RCS+APK +EALICT NWLN++PI+L+  + 
Sbjct: 126 ISRDILAIPVSTVSSESTFNIGGCVVNSNRCSVAPKMMEALICTHNWLNTNPINLEIHNQ 185

Query: 61  ELEEASKFEEGFR 73
           +LEE  +FEEGFR
Sbjct: 186 DLEEDLRFEEGFR 198

BLAST of MELO3C033254.2 vs. TAIR10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-07
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWL 49
           MARDIL IPVS  A +  F    R +D  + SL P+TVEALIC + WL
Sbjct: 627 MARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWL 674

BLAST of MELO3C033254.2 vs. Swiss-Prot
Match: sp|P08770|TRA1_MAIZE (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWL 49
           +ARD+L I VSTVASESAFS GGRVVD  R  L  + VEALICT++W+
Sbjct: 704 IARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 751

BLAST of MELO3C033254.2 vs. Swiss-Prot
Match: sp|P03010|TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWL 49
           +ARD+L I VSTVASESAFS GGRVVD  R  L  + VEALICT++W+
Sbjct: 673 IARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 720

BLAST of MELO3C033254.2 vs. Swiss-Prot
Match: sp|Q75HY5|RSLE3_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-06
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   MARDILVIPVSTVASE----SAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDP 53
           MARD+L IP+S V+S     SA +TG +++D  R SL P+TVEAL C ++WL   P
Sbjct: 682 MARDVLAIPMSMVSSGSSIFSATATGSQMLDDYRSSLRPETVEALFCAKDWLQYPP 737

BLAST of MELO3C033254.2 vs. Swiss-Prot
Match: sp|Q6AVI0|RSLE2_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.9e-06
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0

Query: 1   MARDILVIPVSTVAS-ESAFS--TGGRVVDSSRCSLAPKTVEALICTQNWLNSDP 53
           MARDIL IP+S V+S  S FS  TG R++D  R SL P+ VEAL+C ++WL   P
Sbjct: 652 MARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDWLQYLP 706

BLAST of MELO3C033254.2 vs. Swiss-Prot
Match: sp|Q9M2N5|DSLE_ARATH (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-05
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWL 49
           MARDIL IPVS  A +  F    R +D  + SL P+TVEALIC + WL
Sbjct: 627 MARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWL 674

BLAST of MELO3C033254.2 vs. TrEMBL
Match: tr|A0A1S4DZ17|A0A1S4DZ17_CUCME (uncharacterized protein LOC107991203 OS=Cucumis melo OX=3656 GN=LOC107991203 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHE 60
           MARDIL I VSTVASES FSTGGRVVDSS CSLAPKTVEALICTQNWLN DPIHLQFQHE
Sbjct: 127 MARDILAISVSTVASESTFSTGGRVVDSSHCSLAPKTVEALICTQNWLNFDPIHLQFQHE 186

Query: 61  LEEASKFEEGFRVKARNIEKE 82
           L+EASKFE+ FRV   N EKE
Sbjct: 187 LKEASKFEKAFRVVMEN-EKE 206

BLAST of MELO3C033254.2 vs. TrEMBL
Match: tr|E5GBS6|E5GBS6_CUCME (Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHE 60
           MARDIL I VSTVASES FSTGGRVVDSS CSLAPKTVEALICTQNWLN DPIHLQFQHE
Sbjct: 152 MARDILAISVSTVASESTFSTGGRVVDSSHCSLAPKTVEALICTQNWLNFDPIHLQFQHE 211

Query: 61  LEEASKFEEGFRVKARNIEKE 82
           L+EASKFE+ FRV   N EKE
Sbjct: 212 LKEASKFEKAFRVVMEN-EKE 231

BLAST of MELO3C033254.2 vs. TrEMBL
Match: tr|A0A1S4E139|A0A1S4E139_CUCME (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo OX=3656 GN=LOC107991479 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHE 60
           MARDIL IP STVASESAF+TGGRVVDSS CSLAPKTVE LICTQNWLNSDPI LQ Q E
Sbjct: 243 MARDILAIPDSTVASESAFNTGGRVVDSSCCSLAPKTVETLICTQNWLNSDPIDLQIQDE 302

Query: 61  LEEASKFEEGFRVKARNIEKE 82
           LE+ASKF+E FRV   N EKE
Sbjct: 303 LEKASKFKERFRVVMEN-EKE 322

BLAST of MELO3C033254.2 vs. TrEMBL
Match: tr|A0A1S4E5K1|A0A1S4E5K1_CUCME (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo OX=3656 GN=LOC107992219 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-17
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQH- 60
           ++RDIL IPVST++SES F+ GG VV+S+RCS+APK +EALICT+NWLNS PI+L+  + 
Sbjct: 273 ISRDILAIPVSTISSESTFNIGGCVVNSNRCSVAPKMMEALICTRNWLNSSPINLEIHNQ 332

Query: 61  ELEEASKFEEGFR 73
           +LEE  +FEEGFR
Sbjct: 333 DLEEDLRFEEGFR 345

BLAST of MELO3C033254.2 vs. TrEMBL
Match: tr|A0A2K3L630|A0A2K3L630_TRIPR (HAT family dimerization domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g029906 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 1   MARDILVIPVSTVASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHE 60
           +ARDIL +P+STVASESAFSTGGRV+   R SL P TVEALIC QNWL S P+ +  +  
Sbjct: 622 IARDILAMPISTVASESAFSTGGRVLSCYRSSLTPHTVEALICAQNWLRSSPLSVDIEEH 681

Query: 61  LEEASKFEE 70
           LE+  K EE
Sbjct: 682 LEDLEKLEE 690

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN33918.12.1e-2785.19transposase [Cucumis melo subsp. melo][more]
XP_016901224.12.1e-2785.19PREDICTED: uncharacterized protein LOC107991203 [Cucumis melo][more]
XP_016901938.11.7e-2481.48PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis... [more]
XP_016903504.19.8e-1764.38PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis... [more]
XP_011652627.11.7e-1664.38PREDICTED: uncharacterized protein LOC105435038 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT3G42170.18.5e-0754.17BED zinc finger ;hAT family dimerisation domain[more]
Match NameE-valueIdentityDescription
sp|P08770|TRA1_MAIZE3.0e-0966.67Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2[more]
sp|P03010|TRAC9_MAIZE3.0e-0966.67Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1[more]
sp|Q75HY5|RSLE3_ORYSJ1.8e-0650.00Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j... [more]
sp|Q6AVI0|RSLE2_ORYSJ6.9e-0654.55Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j... [more]
sp|Q9M2N5|DSLE_ARATH1.5e-0554.17Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=... [more]
Match NameE-valueIdentityDescription
tr|A0A1S4DZ17|A0A1S4DZ17_CUCME1.4e-2785.19uncharacterized protein LOC107991203 OS=Cucumis melo OX=3656 GN=LOC107991203 PE=... [more]
tr|E5GBS6|E5GBS6_CUCME1.4e-2785.19Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4E139|A0A1S4E139_CUCME1.1e-2481.48zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo OX=... [more]
tr|A0A1S4E5K1|A0A1S4E5K1_CUCME6.5e-1764.38zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo OX=... [more]
tr|A0A2K3L630|A0A2K3L630_TRIPR1.8e-1462.32HAT family dimerization domain-containing protein (Fragment) OS=Trifolium praten... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR008906HATC_C_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046983 protein dimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033254.2.1MELO3C033254.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 1..48
e-value: 6.1E-17
score: 61.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..111
NoneNo IPR availablePANTHERPTHR23272BED FINGER-RELATEDcoord: 1..51
NoneNo IPR availablePANTHERPTHR23272:SF54SUBFAMILY NOT NAMEDcoord: 1..51
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 1..51

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None