MELO3C032488.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C032488.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionBnaC03g17610D protein
Locationchr07 : 4906619 .. 4910368 (-)
Sequence length929
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCTTCTATCTGGGGTCGAGGCTCCCTCTCCTTAAGAGGATCTGATCACTCTTCTCCTTCTACAATCGTACTATTAGGGAAAGCTTGCCTCTTTGATCCTCTCTCGATATTCCACCTTTTCCCAGGTTGGAATAACCCAAGACGCGCAAAAGAATGTTCTGGGACATATATGATAGAGTTAGTTGTCAGCCACTTGCCTTGGGACTCATACCGCTTGTAGGTCTCACTCAATTATATCCCTCCGATCTCAGAATCGCTTTCTCCTTGATTCTTGCTTCCTAAGAACTTGATCATGAAAGATCCGATCGAAGAAGAGAGAAAACTAATGAATTAGGGTATAGTCAGGAAGTCCCAGGTTCGGACTAGTAAGGGATCTCAACAAATAAGTTAATCACCTGGCCAGATATGTTCTTTCGTGGAAGAAAGTAGCTCGACTTAAGAGTCAGTAGCTGTCGATTCTTCCTTTATCCTCCGTTTCTGAAGTAGCTGAGTTTCAAGAGGATAGGTGGGAATCATACCATTTTTGATATCTTCATAGAACTCAATTCCCATATGAGGTTTTATCGGTAACTAAATAAGAAGGGTTGGACCCATCCCACTCCTAGGTGAGGAATAGGCATTCCATCTGTACTTGCTAAGTATGAATAGGGAAAAAGAAGAGCTGTGTCACGGAAATTAAACTACCACGAACAAGAAGAAATGTGCCAAGAGGGAATGTACTCTTGAGGTTGAGGGATGAACTCTATGGAAGACTAACCCCATGAAAAGTCAACACCATCACCGACCAAGGCTTATAGCGAGCCTTATCACGAGTAGGAAAGAAGTTTAAGTTCCATCTTTTCTTTCTTCAGTGGAAGAACAAAGGTCCAGGTAATAGGTCCGGAGGCGCGAAGCGAAACGACTGTTCAGGAGTACATTAATGAAATAACTCGACTCAAAACAATAGGGTTTGAAAAAGCTCGACTAAGAAGAAGAAGAGAGGGGCGAAGCCACTCGACTGAGGTTAGGAAGGAGAGGTTCAAAGAATTTTCAAGTGAATTCGTTATTCTGCCAATGCTAAGGAGTGCAAGTTGACCTACTAAATAAGGAGAGGAGTTGAGAAGAATTTGAGAAGCGACTGGAAAGGAGTCGGATTCAGTCTCAGTTTAGGAAGGGAAGTACTATTCTCATCTCATCGATCTTGCTAGGGGAAGGATAGTTGTCCGAGGGAGCCGGAGATCCAATCTGAAACTACGAGCACCTTCGATCCATATCTTCTCTTAAGGGCTAGTCCCACTTTCTCGGAAAGATCTGATTTAAGATCTGATCAAGTCTAGCCTACCCCACGTAGTAGTCAATCTAGGGGATGGCTTCTTGGATTCTCATCCCCTCTCTGATCTCGACTGATTCATACCTTTCCCGCGTAGTGGAAAACTCATTTTAGAATGACCTTGAACTTTCTTCTGATCGACTACCTTTTCAATAGTAAGGTAGAGTTGATCGAAGAAGACCTCTGCTTCAAGAGTTGAAACAAGAGTTGCTACTTCAACGGAAAGTCAATGAACAAGGGATCGAGCTTAGTAAACTGCAAGGGATGAAACTATTCTCCCCCTCTAAACTCAAAATATCTACCTTGTTCGCGCGCGAATGGTTCTTGTCAAAAACCTTGATTTGGACTCCTCCCATAAGAAGAGATACATCAAAATAGAATATGATCCTCTTTTTAGTAGGTTTAGCAGAATTTAAGTTGAGAATAGACGGAGCCATAGTTAAGCAGGGAAGACTATGCGTTCCGAATATTAGTGAGCTTAAGGATGCTATACTAGAAGAAGCTCACAATTCAGCTTACGCTATACATCTAGGAAGCACCAAGATGTATAGAACTCTGAAGAAGACTTATTGGTGGCCTGGTATGAAGTGAGAGATAGCTGAATATGTCGATAGATGTTTGATCTGTCAACAAGTTAAACCAGTGAGGCAGAGGCCGGGAGGACTCCTTAATCCCTTGCCAGTGCCAGACTGGAAGTGGGAGCATATTACCATGGATTTTCTATTTGGATTACCCCGTACATCTAGAGGATATGATGGTATATGGGTAATAGTAGATAGACCCACCAAGACAGCGCGGTTTATACCGATTAAAGCAACGTCTACACTAGATCAGCTAGCTAAGTTATATGTCGACAGGATTGTGAGTCAACATGGAGTGCCAGTGTCCATAGTTTCAGATAGGGACCTGAGGTTTACTTCTAAGTTTTGGCCTTGTGTTCAAAAAACAATGGGAACAAAGTTGAAGTTCAGTACCGCGTTCCATCCCCAGACAGATGGTCAGTCAGAGAGGACCATCCAGACCTTAGAAGACATGTTGAGAGCATGTGTCCTTCAGTTTAAGGGAAGTTGGGATACCCACTTATCACTTATGGAGTTCGCTTATAATAACAGCTACCAGTCTAGTATCAGCATGGCACCATTCGAGGCTTTGTATGGCAGACCATGCAGGACCCCTGTGTGCTGGATCGAAGTGGGAGAACAAAATTTAGTTGGTCCTAAGTTAGTACAAGTTACGTCAGACAATATTAAGCTGATTAGAGAAAATCTAAAAATAGCTCAGAATCGACAGAAGAGCTATGCAGATAAGCGACGAAGAGACTTAGAGTTCCAAATTGGAGAACAAGTTTTCTTAAAGTTATCTCCGTGGAAAGGTGTTCTTCGTTTTGGGAGGAAAGGTAAGTTGAGTCCTAGATATATTGGTCTGTACCAGATAATAGAACGAGTTGGACCAGCAGCCTATAAACTTGAATTGTCAGCGGAACTCGCTCGAATACATGATGTTTTTCATGTGTCCATGTTGAGGAAATATATTTCAGATCTATCACATGTGTTGCAAGTACAACCAATTGAACTGAAAGAAGACTTGAGTTATAGAGAGAAAGCAGTTCAGATCCTCAACAGGAAGAACCAAGTTTTGAGGAACAAAACGATCCGGCTCGTGAAAGTTCTTTGGAGACATCATGGAATAGAGGATGCAACCTGGGAGTCAGAAGATCAAATAAGGAGGAGTTACCCGACACTCTTCACCTAAGGACTTCTAAATTTCAAGGACGAAATTTCATAAGGGGAGGTAAGTTGTAAACCCGAGATTTCCCTAGGATCATTTTCTCTTTTCATCTATATTTATGATTACTAAGTTAAAAGAAGAAAGAAAAGAAAAGAAAGGAAGTGGAATTGGACAGCACAAAGCCCACCACCGACAAGCTCATTTTTAAGTCCAATTTCATTTCATTTCTCCATCATTTTCCATCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAAAAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTAAAGAAGATAGGAAAAAGTTCATGCAAAGCTAGCCATTGCAGAATCTTGGTGCAACTGTCAACCTCTGGTTTGTTTTGTTGGGTTTGAGCTATCCAGAAGGAACTAAGCGGTAAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTCCAACAAATTTCATGAAGGAAGCTTGAGCTGAATAGTATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAACTAGGAGGATTTCTGGTGTTCTCTGATCCTTTGAGTATTCTGGAAAAGCACAAGTCGAATCAGAAGCTCTATTTGATATGGTTGGAAAGCTTGTTCAATATCCTACAATTTTGCATGAAGATTTTGTGAGCCAAAAATGACTTTAAGTATCTTTTAAAGTA

mRNA sequence

ATGGACGCTTCTATCTGGGGTCGAGGCTCCCTCTCCTTAAGAGGATCTGATCACTCTTCTCCTTCTACAATCGTACTATTAGGGAAAGCTTGCCTCTTTGATCCTCTCTCGATATTCCACCTTTTCCCAGGTTGGAATAACCCAAGACGCGCAAAAGAATGTTCTGGGACATATATGATAGAGTTAGTTGTCAGCCACTTGCCTTGGGACTCATACCGCTTTGGAAGAACAAAGGTCCAGGTAATAGGTCCGGAGGCGCGAAGCGAAACGACTGTTCAGGAGTACATTAATGAAATAACTCGACTCAAAACAATAGGGTTTGAAAAAGCTCGACTAAGAAGAAGAAGAGAGGGGCGAAGCCACTCGACTGAGGGGAAGGATAGTTGTCCGAGGGAGCCGGAGATCCAATCTGAAACTACGAGCACCTTCGATCCATATCTTCTCTTAAGGGCTAGTCCCACTTTCTCGGAAAGATCTGATTTAAGATCTGATCAAAAAGAAAAGAAAAGAAAGGAAGTGGAATTGGACAGCACAAAGCCCACCACCGACAAGCTCATTTTTAAGTCCAATTTCATTTCATTTCTCCATCATTTTCCATCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAAAAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTAAAGAAGATAGGAAAAAGTTCATGCAAAGCTAGCCATTGCAGAATCTTGGTGCAACTGTCAACCTCTGGTTTGTTTTGTTGGAGCACAGGATTTTCGAGCAAACTAGGAGGATTTCTGGTGTTCTCTGATCCTTTGAGTATTCTGGAAAAGCACAAGTCGAATCAGAAGCTCTATTTGATATGGTTGGAAAGCTTGTTCAATATCCTACAATTTTGCATGAAGATTTTGTGAGCCAAAAATGACTTTAAGTATCTTTTAAAGTA

Coding sequence (CDS)

ATGGACGCTTCTATCTGGGGTCGAGGCTCCCTCTCCTTAAGAGGATCTGATCACTCTTCTCCTTCTACAATCGTACTATTAGGGAAAGCTTGCCTCTTTGATCCTCTCTCGATATTCCACCTTTTCCCAGGTTGGAATAACCCAAGACGCGCAAAAGAATGTTCTGGGACATATATGATAGAGTTAGTTGTCAGCCACTTGCCTTGGGACTCATACCGCTTTGGAAGAACAAAGGTCCAGGTAATAGGTCCGGAGGCGCGAAGCGAAACGACTGTTCAGGAGTACATTAATGAAATAACTCGACTCAAAACAATAGGGTTTGAAAAAGCTCGACTAAGAAGAAGAAGAGAGGGGCGAAGCCACTCGACTGAGGGGAAGGATAGTTGTCCGAGGGAGCCGGAGATCCAATCTGAAACTACGAGCACCTTCGATCCATATCTTCTCTTAAGGGCTAGTCCCACTTTCTCGGAAAGATCTGATTTAAGATCTGATCAAAAAGAAAAGAAAAGAAAGGAAGTGGAATTGGACAGCACAAAGCCCACCACCGACAAGCTCATTTTTAAGTCCAATTTCATTTCATTTCTCCATCATTTTCCATCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAAAAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTAAAGAAGATAGGAAAAAGTTCATGCAAAGCTAGCCATTGCAGAATCTTGGTGCAACTGTCAACCTCTGGTTTGTTTTGTTGGAGCACAGGATTTTCGAGCAAACTAGGAGGATTTCTGGTGTTCTCTGATCCTTTGAGTATTCTGGAAAAGCACAAGTCGAATCAGAAGCTCTATTTGATATGGTTGGAAAGCTTGTTCAATATCCTACAATTTTGCATGAAGATTTTGTGA

Protein sequence

MDASIWGRGSLSLRGSDHSSPSTIVLLGKACLFDPLSIFHLFPGWNNPRRAKECSGTYMIELVVSHLPWDSYRFGRTKVQVIGPEARSETTVQEYINEITRLKTIGFEKARLRRRREGRSHSTEGKDSCPREPEIQSETTSTFDPYLLLRASPTFSERSDLRSDQKEKKRKEVELDSTKPTTDKLIFKSNFISFLHHFPSKLSEHFKERVKKEEEEFRGLRLKKIGKSSCKASHCRILVQLSTSGLFCWSTGFSSKLGGFLVFSDPLSILEKHKSNQKLYLIWLESLFNILQFCMKIL
Homology
[Close]
BLAST of MELO3C032488.2.1 vs. NCBI nr
Match: XP_016903070.1 (PREDICTED: uncharacterized protein LOC107992029 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-11
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 250 STGFSSKLGGFLVFSDPLSILEKHKSNQKLYLIWLESLFNILQ 293
           STGFSSK GGFLVFSD LSILE HKSNQKLYLIWLESLFNILQ
Sbjct: 154 STGFSSKPGGFLVFSDALSILEVHKSNQKLYLIWLESLFNILQ 196

[Close]
BLAST of MELO3C032488.2.1 vs. TrEMBL
Match: tr|A0A1S4E520|A0A1S4E520_CUCME (uncharacterized protein LOC107992029 OS=Cucumis melo OX=3656 GN=LOC107992029 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 250 STGFSSKLGGFLVFSDPLSILEKHKSNQKLYLIWLESLFNILQ 293
           STGFSSK GGFLVFSD LSILE HKSNQKLYLIWLESLFNILQ
Sbjct: 154 STGFSSKPGGFLVFSDALSILEVHKSNQKLYLIWLESLFNILQ 196

[Close]
BLAST of MELO3C032488.2.1 vs. TrEMBL
Match: tr|A0A1S3CAP1|A0A1S3CAP1_CUCME (uncharacterized protein LOC103498328 OS=Cucumis melo OX=3656 GN=LOC103498328 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.3e-04
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 250 STGFSSKLGGFLVFSDPLSILEKHKSNQKLYL 282
           STGFSSK GGFLVFS+ LSILE  KSNQKLYL
Sbjct: 217 STGFSSKPGGFLVFSEALSILEVQKSNQKLYL 248

The following BLAST results are available for this feature:
BLAST of MELO3C032488.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903070.12.4e-1193.02PREDICTED: uncharacterized protein LOC107992029 [Cucumis melo][more]
BLAST of MELO3C032488.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032488.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032488.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E520|A0A1S4E520_CUCME1.6e-1193.02uncharacterized protein LOC107992029 OS=Cucumis melo OX=3656 GN=LOC107992029 PE=... [more]
tr|A0A1S3CAP1|A0A1S3CAP1_CUCME9.3e-0484.38uncharacterized protein LOC103498328 OS=Cucumis melo OX=3656 GN=LOC103498328 PE=... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C032488.2MELO3C032488.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C032488.2.1MELO3C032488.2.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032488.2.1.exon.5MELO3C032488.2.1.exon.5exon
MELO3C032488.2.1.exon.4MELO3C032488.2.1.exon.4exon
MELO3C032488.2.1.exon.3MELO3C032488.2.1.exon.3exon
MELO3C032488.2.1.exon.2MELO3C032488.2.1.exon.2exon
MELO3C032488.2.1.exon.1MELO3C032488.2.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032488.2.1.CDS.5MELO3C032488.2.1.CDS.5CDS
MELO3C032488.2.1.CDS.4MELO3C032488.2.1.CDS.4CDS
MELO3C032488.2.1.CDS.3MELO3C032488.2.1.CDS.3CDS
MELO3C032488.2.1.CDS.2MELO3C032488.2.1.CDS.2CDS
MELO3C032488.2.1.CDS.1MELO3C032488.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032488.2.1.three_prime_UTR.1MELO3C032488.2.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..176