MELO3C032469.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032469.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	zinc finger BED domain-containing protein RICESLEEPER 1-like
Location	chr07 : 4314998 .. 4315222 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGAAAAGGCCTCTTTTGAGTAACGGTAGACTATTTGACGTATGCCCGGTTGCACATACCATGAATCCAATTGCTAAAGACGTGACAGAAGCGATGCAAGAGGTTAACAAAAAGATTCAAGGGAGTTTTAAATATATCAGAAGTTCACATGTCACTCAAGGGAGGTTCAATGAGATGGCTCATCAAATTGGGATCACCAGTCAGACGATATTGGTCTGA

mRNA sequence

ATGTCGAAGAAAAGGCCTCTTTTGAGTAACGGTAGACTATTTGACGTATGCCCGGTTGCACATACCATGAATCCAATTGCTAAAGACGTGACAGAAGCGATGCAAGAGGTTAACAAAAAGATTCAAGGGAGTTTTAAATATATCAGAAGTTCACATGTCACTCAAGGGAGGTTCAATGAGATGGCTCATCAAATTGGGATCACCAGTCAGACGATATTGGTCTGA

Coding sequence (CDS)

ATGTCGAAGAAAAGGCCTCTTTTGAGTAACGGTAGACTATTTGACGTATGCCCGGTTGCACATACCATGAATCCAATTGCTAAAGACGTGACAGAAGCGATGCAAGAGGTTAACAAAAAGATTCAAGGGAGTTTTAAATATATCAGAAGTTCACATGTCACTCAAGGGAGGTTCAATGAGATGGCTCATCAAATTGGGATCACCAGTCAGACGATATTGGTCTGA

Protein sequence

MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNEMAHQIGITSQTILV

Homology

[Close]

BLAST of MELO3C032469.2 vs. NCBI nr
Match: XP_022976722.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita maxima] >XP_022976723.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita maxima])

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SKKRPLLSNGRLFD+C  AHTMN IA+DV EA++E+ +KI+ SFKYIRSS V QGRFNE
Sbjct: 284 ISKKRPLLSNGRLFDLCSAAHTMNAIAEDVIEALREITQKIRASFKYIRSSQVIQGRFNE 343

Query: 61  MAHQIGITSQTILV 75
           MAHQ+GITSQ ILV
Sbjct: 344 MAHQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.2 vs. NCBI nr
Match: XP_023536471.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita pepo subsp. pepo] >XP_023536472.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SKKRPLLSNGRLFDVC  AHTMN IA+DV EA++E  +KI+ SFKYIRSS V QGRFNE
Sbjct: 284 ISKKRPLLSNGRLFDVCSAAHTMNAIAEDVIEALRETTQKIRASFKYIRSSQVIQGRFNE 343

Query: 61  MAHQIGITSQTILV 75
           MAHQ+GITSQ ILV
Sbjct: 344 MAHQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.2 vs. NCBI nr
Match: XP_022935970.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-23
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SKKRPLLSNGRLFDVC  AHTMN IA+DV E ++E+ +KI+ SFKYIRSS V QGRFNE
Sbjct: 284 ISKKRPLLSNGRLFDVCSAAHTMNAIAEDVIEVLREITQKIRASFKYIRSSQVIQGRFNE 343

Query: 61  MAHQIGITSQTILV 75
           MAHQ+GITSQ ILV
Sbjct: 344 MAHQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.2 vs. NCBI nr
Match: KGN55034.1 (hypothetical protein Csa_4G624400 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 3.4e-23
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SK+R LLSN RLFDVC  AHT+N IAKDV EAM+EVN+KI+GSFKYIRSS VTQ RFNE
Sbjct: 482 ISKQRSLLSNVRLFDVCSAAHTINAIAKDVIEAMREVNQKIRGSFKYIRSSQVTQARFNE 541

Query: 61  MAHQIGITSQTILV 75
           MAHQ+GITSQ ILV
Sbjct: 542 MAHQVGITSQKILV 555

[Close]

BLAST of MELO3C032469.2 vs. NCBI nr
Match: XP_011654029.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis sativus] >XP_011654030.1 PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 3.4e-23
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SK+R LLSN RLFDVC  AHT+N IAKDV EAM+EVN+KI+GSFKYIRSS VTQ RFNE
Sbjct: 284 ISKQRSLLSNVRLFDVCSAAHTINAIAKDVIEAMREVNQKIRGSFKYIRSSQVTQARFNE 343

Query: 61  MAHQIGITSQTILV 75
           MAHQ+GITSQ ILV
Sbjct: 344 MAHQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.2 vs. Swiss-Prot
Match: sp|Q75HY5|RSLE3_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-04
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 2   SKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNEM 61
           +KK  ++  G+LF V   AH +N +A+DV  ++  V   I+ S K+I++S V + +F E+
Sbjct: 366 NKKDNIMIKGQLFVVRCYAHILNTVAQDVIASVHSVIYHIRESIKFIKASSVHEDKFAEI 425

Query: 62  AHQIGITSQTIL 74
           A Q+ I S   L
Sbjct: 426 ALQLEIPSAKTL 437

[Close]

BLAST of MELO3C032469.2 vs. Swiss-Prot
Match: sp|B9FJG3|RSLE1_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-04
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +S K  L+  G+LF V   AH +N +A+DV  ++  V   I+ S K+I++S   + +F E
Sbjct: 324 LSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSCEEKFAE 383

Query: 61  MAHQIGITSQTIL 74
           +A Q+ I S   L
Sbjct: 384 IALQLEIPSTKTL 396

[Close]

BLAST of MELO3C032469.2 vs. Swiss-Prot
Match: sp|Q6AVI0|RSLE2_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-04
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +S K  L+  G+LF V   AH +N +A+DV  ++  V   I+ S K+I++S   + +F E
Sbjct: 324 LSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSREEKFAE 383

Query: 61  MAHQIGITSQTIL 74
           +A Q+ I S   L
Sbjct: 384 IALQLEIPSTKTL 396

[Close]

BLAST of MELO3C032469.2 vs. TrEMBL
Match: tr|A0A1S4E4C0|A0A1S4E4C0_CUCME (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo OX=3656 GN=LOC107992032 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-23
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 3   KKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNEMA 62
           KKR LLSNG LFDVC  AHT+N IAKDV EAM+EVN+KI+GSFKYIRSS VTQ RFNEMA
Sbjct: 286 KKRSLLSNGSLFDVCSAAHTINAIAKDVIEAMREVNQKIRGSFKYIRSSQVTQRRFNEMA 345

Query: 63  HQIGITSQTILV 75
           HQ+GITSQ ILV
Sbjct: 346 HQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.2 vs. TrEMBL
Match: tr|A0A0A0L1Z7|A0A0A0L1Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G624400 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-23
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SK+R LLSN RLFDVC  AHT+N IAKDV EAM+EVN+KI+GSFKYIRSS VTQ RFNE
Sbjct: 482 ISKQRSLLSNVRLFDVCSAAHTINAIAKDVIEAMREVNQKIRGSFKYIRSSQVTQARFNE 541

Query: 61  MAHQIGITSQTILV 75
           MAHQ+GITSQ ILV
Sbjct: 542 MAHQVGITSQKILV 555

[Close]

BLAST of MELO3C032469.2 vs. TrEMBL
Match: tr|A0A2I4E182|A0A2I4E182_9ROSI (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Juglans regia OX=51240 GN=LOC108985342 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.9e-16
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +S KRPLLSNG+LFDV   AH +N I +D  EA++EV +KI+GS KY+RSS VTQG+FNE
Sbjct: 286 ISHKRPLLSNGQLFDVRSAAHVLNLIVQDALEALREVTQKIRGSVKYVRSSQVTQGKFNE 345

Query: 61  MAHQIGITSQTILV 75
            A Q+GI+S+  L+
Sbjct: 346 FAQQVGISSKKNLL 359

[Close]

BLAST of MELO3C032469.2 vs. TrEMBL
Match: tr|A0A067KRK2|A0A067KRK2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11935 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-16
Identity = 43/74 (58.11%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +S+ RPLLSNG+LFDV   AH +N I +DV EA+QE+ +KI+GS +Y++SS VTQG+FNE
Sbjct: 286 ISQNRPLLSNGQLFDVRSSAHVLNLIVQDVMEALQELTQKIRGSVRYVKSSQVTQGKFNE 345

Query: 61  MAHQIGITSQTILV 75
           ++ Q+GI+SQ  LV
Sbjct: 346 ISQQVGISSQKNLV 359

[Close]

BLAST of MELO3C032469.2 vs. TrEMBL
Match: tr|A0A2C9W709|A0A2C9W709_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G079200 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-15
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +S+ RPLLSNG+LFDV   AH +N I +D  EA++EV +KI+GS +Y++SS VT G+FNE
Sbjct: 285 ISQNRPLLSNGQLFDVRSAAHALNCIVQDAMEALREVTQKIRGSVRYVKSSQVTHGKFNE 344

Query: 61  MAHQIGITSQTILV 75
           ++ Q+GIT Q  LV
Sbjct: 345 ISQQVGITGQKNLV 358

The following BLAST results are available for this feature:

BLAST of MELO3C032469.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976722.1	2.0e-23	75.68	zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita maxima] ...	[more]
XP_023536471.1	2.0e-23	77.03	zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita pepo sub...	[more]
XP_022935970.1	2.6e-23	75.68	zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita moschata...	[more]
KGN55034.1	3.4e-23	78.38	hypothetical protein Csa_4G624400 [Cucumis sativus]	[more]
XP_011654029.1	3.4e-23	78.38	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis...	[more]

BLAST of MELO3C032469.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032469.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q75HY5\|RSLE3_ORYSJ	1.4e-04	36.11	Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j...	[more]
sp\|B9FJG3\|RSLE1_ORYSJ	4.1e-04	35.62	Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j...	[more]
sp\|Q6AVI0\|RSLE2_ORYSJ	4.1e-04	35.62	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]

BLAST of MELO3C032469.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E4C0\|A0A1S4E4C0_CUCME	2.2e-23	80.56	zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo OX=...	[more]
tr\|A0A0A0L1Z7\|A0A0A0L1Z7_CUCSA	2.2e-23	78.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G624400 PE=4 SV=1	[more]
tr\|A0A2I4E182\|A0A2I4E182_9ROSI	5.9e-16	59.46	zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Juglans regia OX...	[more]
tr\|A0A067KRK2\|A0A067KRK2_JATCU	7.6e-16	58.11	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11935 PE=4 SV=1	[more]
tr\|A0A2C9W709\|A0A2C9W709_MANES	6.5e-15	55.41	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G079200 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032469.2.1	MELO3C032469.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23272:SF13	SUBFAMILY NOT NAMED	coord: 1..74
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 1..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C032469.2	Cp4.1LG06g05260	Cucurbita pepo (Zucchini)	cpemedB870

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032469.2	Cucurbita maxima (Rimu)	cmamedB044
MELO3C032469.2	Cucurbita maxima (Rimu)	cmamedB509
MELO3C032469.2	Cucurbita moschata (Rifu)	cmomedB034
MELO3C032469.2	Cucurbita moschata (Rifu)	cmomedB497
MELO3C032469.2	Cucurbita pepo (Zucchini)	cpemedB631
MELO3C032469.2	Wild cucumber (PI 183967)	cpimedB287
MELO3C032469.2	Cucumber (Chinese Long) v2	cumedB283
MELO3C032469.2	Bottle gourd (USVL1VR-Ls)	lsimedB331
MELO3C032469.2	Watermelon (Charleston Gray)	medwcgB450
MELO3C032469.2	Watermelon (97103) v1	medwmB524
MELO3C032469.2	Silver-seed gourd	carmedB0326
MELO3C032469.2	Silver-seed gourd	carmedB0644
MELO3C032469.2	Cucumber (Chinese Long) v3	cucmedB291
MELO3C032469.2	Watermelon (97103) v2	medwmbB460
MELO3C032469.2	Wax gourd	medwgoB609
MELO3C032469.2	Cucumber (Gy14) v2	cgybmedB252
MELO3C032469.2	Cucumber (Gy14) v1	cgymedB042