MELO3C030437.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C030437.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionDisease resistance protein
Locationchr04 : 8245366 .. 8245763 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAATTCCTTTGGACTTTTGCTGTTTAGGAAGTCTTAAAGAAGATCGTGAAATTTGAAGCTCAACAAATTGGGTTAGCATGGGGATTAGAGAAGAAGAAGCTGTCCAATTTGAGAAATTGGTTACTTAAAGCTGAAATAATCTTAGTAGACATTAACAGAAAGAAGTTACAAAACGATTCTATGAGGCTATGGGTGAAAGAACTTCAAGATATTGTCTACGAAGCTGATGATCTACTGAATCAGCTTGTTTATGAAGATCTTCGAACAACTGCGGAACAAACTGAAAATTTGAGAAAGGTACGTGATTTTATTTTCATCCTACTATCTAAAAATCCCTTCTTGTTTCGTTGCTAGAAGGCCAAGAAAATGAAGAACATTACTTAAACTTTATA

mRNA sequence

ATGGTTGAATTCCTTTGGACTTTTGCTGTTTAGGAAGTCTTAAAGAAGATCGTGAAATTTGAAGCTCAACAAATTGGGTTAGCATGGGGATTAGAGAAGAAGAAGCTGTCCAATTTGAGAAATTGGTTACTTAAAGCTGAAATAATCTTAGTAGACATTAACAGAAAGAAGTTACAAAACGATTCTATGAGGCTATGGGTGAAAGAACTTCAAGATATTGTCTACGAAGCTGATGATCTACTGAATCAGCTTGTTTATGAAGATCTTCGAACAACTGCGGAACAAACTGAAAATTTGAGAAAGGTACGTGATTTTATTTTCATCCTACTATCTAAAAATCCCTTCTTGTTTCGTTGCTAGAAGGCCAAGAAAATGAAGAACATTACTTAAACTTTATA

Coding sequence (CDS)

ATGAGGCTATGGGTGAAAGAACTTCAAGATATTGTCTACGAAGCTGATGATCTACTGAATCAGCTTGTTTATGAAGATCTTCGAACAACTGCGGAACAAACTGAAAATTTGAGAAAGGTACGTGATTTTATTTTCATCCTACTATCTAAAAATCCCTTCTTGTTTCGTTGCTAG

Protein sequence

MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFRC
Homology
[Close]
BLAST of MELO3C030437.2 vs. NCBI nr
Match: XP_004140442.1 (PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN50811.1 hypothetical protein Csa_5G266890 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 3   LWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLF 56
           LWV+EL DI+YEADDLL+++VYE +R T EQT  LRKVRD   I  SKN FLF
Sbjct: 64  LWVEELHDIIYEADDLLDEIVYEQIRQTVEQTGKLRKVRD--SISPSKNSFLF 114

[Close]
BLAST of MELO3C030437.2 vs. NCBI nr
Match: XP_022145171.1 (putative disease resistance protein RGA3 [Momordica charantia] >XP_022145172.1 putative disease resistance protein RGA3 [Momordica charantia] >XP_022145173.1 putative disease resistance protein RGA3 [Momordica charantia] >XP_022145174.1 putative disease resistance protein RGA3 [Momordica charantia] >XP_022145175.1 putative disease resistance protein RGA3 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFR 57
           +RLWV++LQ +VY+ADDLL++LVYEDLR   E  E + KVR+  F  L+ NPFLFR
Sbjct: 62  VRLWVEDLQHLVYQADDLLDELVYEDLRRKVE-IEKINKVRN--FFSLTNNPFLFR 114

[Close]
BLAST of MELO3C030437.2 vs. NCBI nr
Match: XP_022145229.1 (putative disease resistance protein RGA4 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 9.9e-07
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFR 57
           +RLWV++LQ +VY+ADDLL+ LVYEDLR   E  E + KVR+  F+  S NPFLFR
Sbjct: 62  VRLWVEDLQHLVYQADDLLDDLVYEDLRQKVEM-EKINKVRN--FLSPSNNPFLFR 114

[Close]
BLAST of MELO3C030437.2 vs. NCBI nr
Match: XP_004136783.2 (PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN59485.1 hypothetical protein Csa_3G822360 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 8.3e-06
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFR 57
           ++ WV++L+DIV+EADDLL++LVYE LR T E TE   KV D   I  S N FLFR
Sbjct: 62  VKRWVEKLEDIVHEADDLLDELVYEHLRRTVEHTEKFSKVSD--SISSSINSFLFR 115

[Close]
BLAST of MELO3C030437.2 vs. NCBI nr
Match: XP_022150842.1 (putative disease resistance protein RGA3 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFR 57
           +RLWV +LQD+V+EA+DLL++LVYEDLR    QT  ++KVR+  F+  S N F+FR
Sbjct: 62  VRLWVDKLQDLVHEAEDLLDELVYEDLRRKV-QTAKMKKVRN--FLSPSNNAFVFR 114

[Close]
BLAST of MELO3C030437.2 vs. TrEMBL
Match: tr|A0A0A0KST5|A0A0A0KST5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266890 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 3   LWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLF 56
           LWV+EL DI+YEADDLL+++VYE +R T EQT  LRKVRD   I  SKN FLF
Sbjct: 64  LWVEELHDIIYEADDLLDEIVYEQIRQTVEQTGKLRKVRD--SISPSKNSFLF 114

[Close]
BLAST of MELO3C030437.2 vs. TrEMBL
Match: tr|A0A0A0LBV0|A0A0A0LBV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822360 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-06
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFR 57
           ++ WV++L+DIV+EADDLL++LVYE LR T E TE   KV D   I  S N FLFR
Sbjct: 62  VKRWVEKLEDIVHEADDLLDELVYEHLRRTVEHTEKFSKVSD--SISSSINSFLFR 115

[Close]
BLAST of MELO3C030437.2 vs. TrEMBL
Match: tr|A0A2P4K1L9|A0A2P4K1L9_QUESU (Putative disease resistance protein rga3 OS=Quercus suber OX=58331 GN=CFP56_24885 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-04
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTEN-LRKVRDFIFILLSKNPFLFR 57
           ++LW+++L+D+ YEADD+L++  YE+LR   E   N  RKVRD   I  + NPFLFR
Sbjct: 54  VKLWLQKLEDVAYEADDVLDEFAYENLRQKIEVGNNRKRKVRD---ICSTSNPFLFR 107

The following BLAST results are available for this feature:
BLAST of MELO3C030437.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140442.12.3e-0866.04PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN50811.1 hy... [more]
XP_022145171.13.4e-0758.93putative disease resistance protein RGA3 [Momordica charantia] >XP_022145172.1 p... [more]
XP_022145229.19.9e-0758.93putative disease resistance protein RGA4 [Momordica charantia][more]
XP_004136783.28.3e-0657.14PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN59485.1 hy... [more]
XP_022150842.11.1e-0555.36putative disease resistance protein RGA3 [Momordica charantia][more]
BLAST of MELO3C030437.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C030437.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C030437.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KST5|A0A0A0KST5_CUCSA1.6e-0866.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266890 PE=3 SV=1[more]
tr|A0A0A0LBV0|A0A0A0LBV0_CUCSA5.5e-0657.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822360 PE=3 SV=1[more]
tr|A0A2P4K1L9|A0A2P4K1L9_QUESU1.4e-0449.12Putative disease resistance protein rga3 OS=Quercus suber OX=58331 GN=CFP56_2488... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0043531 ADP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030437.2.1MELO3C030437.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C030437.2Watermelon (Charleston Gray)medwcgB314
MELO3C030437.2Watermelon (97103) v1medwmB378
MELO3C030437.2Silver-seed gourdcarmedB0321
MELO3C030437.2Silver-seed gourdcarmedB0898
MELO3C030437.2Cucumber (Chinese Long) v3cucmedB212
MELO3C030437.2Watermelon (97103) v2medwmbB310
MELO3C030437.2Wax gourdmedwgoB438
MELO3C030437.2Cucumber (Gy14) v2cgybmedB186
MELO3C030437.2Cucumber (Gy14) v1cgymedB560
MELO3C030437.2Cucurbita maxima (Rimu)cmamedB032
MELO3C030437.2Cucurbita maxima (Rimu)cmamedB491
MELO3C030437.2Cucurbita moschata (Rifu)cmomedB021
MELO3C030437.2Cucurbita moschata (Rifu)cmomedB478
MELO3C030437.2Cucurbita pepo (Zucchini)cpemedB617
MELO3C030437.2Cucurbita pepo (Zucchini)cpemedB860
MELO3C030437.2Wild cucumber (PI 183967)cpimedB209
MELO3C030437.2Cucumber (Chinese Long) v2cumedB208
MELO3C030437.2Bottle gourd (USVL1VR-Ls)lsimedB326