MELO3C029916.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029916.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Locationchr03 : 10809240 .. 10810216 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACTGAATATAGGTTCTTCTTTTTCTGTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTCTGATTTGAAGGAAAAAAGTTTATTTGAAAGTAAACAAGTGCTTTCAAAGTGTTTTTGCATAATAGCAATGAAGGACCAACTTTCAATTTAGGACTACAGTATCAAATTTGAGGTCTCTTGAATTTAGATGTCTGCAAGAAGGCTGCAAAAAATATGTTAGGGCTTCTCGTTATCAGAAGAGTGATTTGTGGATGCTACGAAAATACACTTCTGACCATGATTGTTCATTGAGTACTACCCAAAGTTCTCACATGCAAGCATCTTAAACAGTAATTGACAATTGTTTGGTAGATGATTTTAGATTCATGTCTACTTATTGTTCCATTCCTAAAGTGATTGTGCATAAAGCTCGTACAAATCTTAGAGTTAATATAAGTTACCAAAAAGCATAGAAGACGAAAGAACATATGGTAAAGATACTACAAGGTGACGCAGTTGAATTGTATGCATTAATTCCAAGTTTCTTTGATAAATTGGTTGAATCTAACTCCGGTATGATCAGTTTATATATCAAATTTAAATTTATTTGCAAATAGATGTGGATAGACTAATATCATAGTCTATATAGATAGACAAATATTAGAATCTATCACATTCTTTCTGTTCTTTTTTGTTTGTGCTTATAGAAGTGTATTTTTAATTATTATCGGTACATGCATTGCTTTATAAATGGATGATAGTGGTCATTTCAAGTTTTTCTTTATGGCTTTTTGTGCATCAATTCAGGGGTGGAAATACTATAGGCCTATTATTTTTATTGATGGGACATTTTTGAAGTGTAAGTTTGGTAGCATCCTATTAATAGCCTCATCACAAGATGGTAACAATCAAACCTTCCCTTTTGCTTTTGCCATTATAGATTCTGAAAATGATGTATCATGAACATGGTCTTTTTAGAAGATACGA

mRNA sequence

ATGTCACTGAATATAGGTTCTTCTTTTTCTGTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTCTGATTTGAAGGAAAAAAGTTTATTTGAAAGTAAACAAGTGCTTTCAAAGTGTTTTTGCATAATAGCAATGAAGGACCAACTTTCAATTTAGGACTACAGTATCAAATTTGAGGTCTCTTGAATTTAGATGTCTGCAAGAAGGCTGCAAAAAATATGTTAGGGCTTCTCGTTATCAGAAGAGTGATTTGTGGATGCTACGAAAATACACTTCTGACCATGATTGTTCATTGAGTACTACCCAAAGTTCTCACATATTCATGTCTACTTATTGTTCCATTCCTAAAGTGATTGTGCATAAAGCTCGTACAAATCTTAGAGTTAATATAAGTTACCAAAAAGCATAGAAGACGAAAGAACATATGGTAAAGATACTACAAGGTGACGCAGTTGAATTGTATGCATTAATTCCAAGTTTCTTTGATAAATTGGTTGAATCTAACTCCGGTACATGCATTGCTTTATAAATGGATGATAGTGGTCATTTCAAGTTTTTCTTTATGGCTTTTTGTGCATCAATTCAGGGGTGGAAATACTATAGGCCTATTATTTTTATTGATGGGACATTTTTGAAGTGTAAGTTTGGTAGCATCCTATTAATAGCCTCATCACAAGATGGTAACAATCAAACCTTCCCTTTTGCTTTTGCCATTATAGATTCTGAAAATGATGTATCATGAACATGGTCTTTTTAGAAGATACGA

Coding sequence (CDS)

ATGGATGATAGTGGTCATTTCAAGTTTTTCTTTATGGCTTTTTGTGCATCAATTCAGGGGTGGAAATACTATAGGCCTATTATTTTTATTGATGGGACATTTTTGAAGTGTAAGTTTGGTAGCATCCTATTAATAGCCTCATCACAAGATGGTAACAATCAAACCTTCCCTTTTGCTTTTGCCATTATAGATTCTGAAAATGATGTATCATGA

Protein sequence

MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAIIDSENDVS
Homology
[Close]
BLAST of MELO3C029916.2 vs. NCBI nr
Match: XP_009114424.1 (PREDICTED: uncharacterized protein LOC103839683 [Brassica rapa])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           +D S  FK+ F+AF ASI+G+ + R ++ +DGTFL+ K+   LLIASSQDGN Q FP AF
Sbjct: 372 VDSSDRFKYLFLAFGASIKGFPFMRKVVVVDGTFLQGKYKGTLLIASSQDGNFQIFPIAF 431

Query: 61  AIIDSENDVS 71
           AI+D+END S
Sbjct: 432 AIVDTENDES 441

[Close]
BLAST of MELO3C029916.2 vs. NCBI nr
Match: XP_013589048.1 (PREDICTED: uncharacterized protein LOC106297329 [Brassica oleracea var. oleracea])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           +D S  FK+ F+AF ASI+G+ + R ++ +DGTFL+ K+   LLIASSQDGN Q FP AF
Sbjct: 372 VDSSDRFKYLFLAFGASIKGFPFMRKVVVVDGTFLQGKYKGTLLIASSQDGNFQIFPIAF 431

Query: 61  AIIDSENDVS 71
           AI+D+END S
Sbjct: 432 AIVDTENDES 441

[Close]
BLAST of MELO3C029916.2 vs. NCBI nr
Match: XP_013654286.1 (uncharacterized protein LOC106359076 [Brassica napus])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           +D S  FK+ F+AF ASI+G+ + R ++ +DGTFL+ K+   LLIASSQDGN Q FP AF
Sbjct: 314 VDSSDRFKYLFIAFGASIKGFPFMRKVVVVDGTFLQGKYKGTLLIASSQDGNFQIFPIAF 373

Query: 61  AIIDSENDVS 71
           AI+D+END S
Sbjct: 374 AIVDTENDES 383

[Close]
BLAST of MELO3C029916.2 vs. NCBI nr
Match: XP_013658104.1 (uncharacterized protein LOC106362807 [Brassica napus] >XP_013658994.1 uncharacterized protein LOC106363866 [Brassica napus] >XP_013668794.1 uncharacterized protein LOC106373122 [Brassica napus] >XP_013729460.1 uncharacterized protein LOC106433163 [Brassica napus])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           +D S  FK+ F+AF ASI+G+ + R ++ +DGTFL+ K+   LLIASSQDGN Q FP AF
Sbjct: 313 VDSSDRFKYLFIAFGASIKGFPFMRKVVVVDGTFLQGKYKGTLLIASSQDGNFQIFPIAF 372

Query: 61  AIIDSENDVS 71
           AI+D+END S
Sbjct: 373 AIVDTENDES 382

[Close]
BLAST of MELO3C029916.2 vs. NCBI nr
Match: XP_013699759.1 (uncharacterized protein LOC106403482 [Brassica napus])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           +D S  FK+ F+AF ASI+G+ + R ++ +DGTFL+ K+   LLIASSQDGN Q FP AF
Sbjct: 270 VDSSDRFKYLFIAFGASIKGFPFMRKVVVVDGTFLQGKYKGTLLIASSQDGNFQIFPIAF 329

Query: 61  AIIDSENDVS 71
           AI+D+END S
Sbjct: 330 AIVDTENDES 339

[Close]
BLAST of MELO3C029916.2 vs. TAIR10
Match: AT1G49920.1 (MuDR family transposase)

HSP 1 Score: 50.1 bits (118), Expect = 6.6e-07
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0 

Query: 7   FKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAI 63
           F+  F AF  SIQG+++ RP+I +D   L  K+   L+IAS+ D  NQ FP AFA+
Sbjct: 361 FRGLFWAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAV 416

[Close]
BLAST of MELO3C029916.2 vs. TAIR10
Match: AT1G64255.1 (MuDR family transposase)

HSP 1 Score: 48.5 bits (114), Expect = 1.9e-06
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 11  FMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAI 63
           F AF  SI+G+++ RP+I +D   L C++   L+IAS  D  N+ FP AFA+
Sbjct: 369 FWAFPQSIEGFQHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAV 420

[Close]
BLAST of MELO3C029916.2 vs. TAIR10
Match: AT1G64260.1 (MuDR family transposase)

HSP 1 Score: 47.4 bits (111), Expect = 4.3e-06
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0 

Query: 3   DSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAI 62
           D   F+  F +F  SI+G+++ RP+I +D   L  K+   L+IAS  D  N+ FP AFA+
Sbjct: 354 DFASFRGVFWSFSQSIEGFQHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAV 413

[Close]
BLAST of MELO3C029916.2 vs. TrEMBL
Match: tr|A0A1S4DWH2|A0A1S4DWH2_CUCME (uncharacterized protein LOC107990862 OS=Cucumis melo OX=3656 GN=LOC107990862 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 12 MAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAIIDSENDVS 71
          MA  +SI GW+Y RP I +DGTFLKCK+G  LL A++ DGN++ FP AF+I+DSEND S
Sbjct: 1  MAIASSIDGWRYCRPNIVVDGTFLKCKYGGTLLTAATMDGNSKIFPLAFSIVDSENDAS 59

[Close]
BLAST of MELO3C029916.2 vs. TrEMBL
Match: tr|W9R1I1|W9R1I1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013693 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           +DD   FK+ FMA  ASI GWK+ RP+I +D  FL+CK    LL A ++D NNQ FP AF
Sbjct: 427 LDDENKFKYMFMAVAASIHGWKHCRPVIVVDEIFLECKHRGSLLCACAEDANNQIFPLAF 486

Query: 61  AIIDSENDVS 71
            I +SEND S
Sbjct: 487 GIGESENDES 496

[Close]
BLAST of MELO3C029916.2 vs. TrEMBL
Match: tr|A0A087HFQ3|A0A087HFQ3_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA2G066100 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 7   FKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAIIDSE 66
           FKF F++F ASI+GW Y R +I +DGT L  ++G  +L AS+QDGN Q FP A+AI+DSE
Sbjct: 380 FKFLFLSFAASIRGWDYMRRVILLDGTHLHGRYGGCMLTASAQDGNYQIFPLAYAIVDSE 439

Query: 67  NDVS 71
           ND S
Sbjct: 440 NDKS 443

[Close]
BLAST of MELO3C029916.2 vs. TrEMBL
Match: tr|A0A087GWT7|A0A087GWT7_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA5G132400 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 7   FKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAIIDSE 66
           FKF F++F ASI+GW Y R +I +DGT L  ++G  +L AS+QDGN Q FP A+AI+DSE
Sbjct: 382 FKFLFLSFAASIRGWDYMRRVILLDGTHLHGRYGGCMLTASAQDGNYQIFPLAYAIVDSE 441

Query: 67  NDVS 71
           ND S
Sbjct: 442 NDKS 445

[Close]
BLAST of MELO3C029916.2 vs. TrEMBL
Match: tr|A0A1S3CF11|A0A1S3CF11_CUCME (uncharacterized protein LOC103499740 OS=Cucumis melo OX=3656 GN=LOC103499740 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-12
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 0 

Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           +D  G F +FFM   ASI GW++ RP+IFIDGT  K K+G  LL AS+ D N+Q F  AF
Sbjct: 140 VDADGRFLYFFMELSASISGWQHCRPVIFIDGTSPKNKYGGTLLSASTPDSNDQIFRLAF 199

Query: 61  AIIDSENDVS 71
            ++DSEND S
Sbjct: 200 CVVDSENDSS 209

The following BLAST results are available for this feature:
BLAST of MELO3C029916.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_009114424.11.7e-1357.14PREDICTED: uncharacterized protein LOC103839683 [Brassica rapa][more]
XP_013589048.11.7e-1357.14PREDICTED: uncharacterized protein LOC106297329 [Brassica oleracea var. oleracea... [more]
XP_013654286.12.3e-1357.14uncharacterized protein LOC106359076 [Brassica napus][more]
XP_013658104.12.3e-1357.14uncharacterized protein LOC106362807 [Brassica napus] >XP_013658994.1 uncharacte... [more]
XP_013699759.12.3e-1357.14uncharacterized protein LOC106403482 [Brassica napus][more]
BLAST of MELO3C029916.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49920.16.6e-0746.43MuDR family transposase[more]
AT1G64255.11.9e-0644.23MuDR family transposase[more]
AT1G64260.14.3e-0640.00MuDR family transposase[more]
BLAST of MELO3C029916.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029916.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DWH2|A0A1S4DWH2_CUCME2.0e-1361.02uncharacterized protein LOC107990862 OS=Cucumis melo OX=3656 GN=LOC107990862 PE=... [more]
tr|W9R1I1|W9R1I1_9ROSA9.8e-1354.29Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013693 PE=4 SV=1[more]
tr|A0A087HFQ3|A0A087HFQ3_ARAAL9.8e-1357.81Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA2G066100 PE=4 SV=1[more]
tr|A0A087GWT7|A0A087GWT7_ARAAL9.8e-1357.81Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA5G132400 PE=4 SV=1[more]
tr|A0A1S3CF11|A0A1S3CF11_CUCME2.2e-1254.29uncharacterized protein LOC103499740 OS=Cucumis melo OX=3656 GN=LOC103499740 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018289MULE_transposase_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029916.2.1MELO3C029916.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018289MULE transposase domainPFAMPF10551MULEcoord: 27..68
e-value: 1.2E-8
score: 35.2
NoneNo IPR availablePANTHERPTHR31973FAMILY NOT NAMEDcoord: 2..68

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029916.2Watermelon (97103) v2medwmbB292
MELO3C029916.2Wax gourdmedwgoB348
MELO3C029916.2Cucurbita maxima (Rimu)cmamedB027
MELO3C029916.2Cucurbita maxima (Rimu)cmamedB476
MELO3C029916.2Cucurbita moschata (Rifu)cmomedB015
MELO3C029916.2Cucurbita moschata (Rifu)cmomedB463
MELO3C029916.2Cucurbita pepo (Zucchini)cpemedB611
MELO3C029916.2Cucurbita pepo (Zucchini)cpemedB855
MELO3C029916.2Bottle gourd (USVL1VR-Ls)lsimedB492
MELO3C029916.2Silver-seed gourdcarmedB0614
MELO3C029916.2Silver-seed gourdcarmedB0634