MELO3C028605.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028605.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein LONGIFOLIA 2
Location	chr01 : 4461019 .. 4461840 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGTGGCTAGTAGTGAAGATGGGTCGACGGTAGAACAAGATGCAATAGCACTAAAGCACCCCAATCCCATCTATGTCCTCGATGGCTCGTTATATAGAGATGATGAAGCATCTCCTATGAAAAAAATTACGATTTCACTTCTGGGTAAACTCTTGTTATTCAACCATTTGTGGCAGCTGCTTTGTCAAAAGTTATTAGTCCAATTAAACTGACTTAGTAATTTTATTTGCCTGATTTTACTCTATGATAGTTCAAGGAATGATAATCCATTTGTCTAAACCTTCAAATTTTCAAGGATATAAAAATTGTAGTTATAGTTGTTTGTTTCTTGACTGGTTATCATACTATGCTATGTCCATTTCTAATTTTGTAATGGGTACTAAGTTCAATAACAGGTTCTCTCAGTGCAACTGTATGATCTAAAACTCTGGAATCATTGCATCTGTAATTAAATCTGGTGATCAGGATGGATTGCAAGTGATAGAAGTTCTCAGATTGTGTTGCTTCAGAGGAAACTAAGTCAGTTGCTCGTGTTCCAAATAATGGTAATAATTTTATGTTTGTTATAGCTTCTTGGGAATTCTAATGCTTATGTCTCGTGTTCTTTTTTCCTATATAGAAAGTATAGGGAAGAGTGAGTGTGATTTGCCTGTATTTTGCGAGTTTCATCTTCCATATAATCATCTCTTCCATTTTTCGAGCCTTTCTCCTCCACTTGTGCCATTATAGTAAACAACAGAGAGGCAGAGTACTAACAAATGAACTTTCTACAAGGAAATCGTTGAAATTCATGTGAGTTCTATTACCTTTTTTATATAATC

mRNA sequence

ACGGTGGCTAGTAGTGAAGATGGGTCGACGGTAGAACAAGATGCAATAGCACTAAAGCACCCCAATCCCATCTATGTCCTCGATGGCTCGTTATATAGAGATGATGAAGCATCTCCTATGAAAAAAATTACGATTTCACTTCTGGAAAGTATAGGGAAGAGTGAGTGTGATTTGCCTGTATTTTGCGAGTTTCATCTTCCATATAATCATCTCTTCCATTTTTCGAGCCTTTCTCCTCCACTTGTGCCATTATAGTAAACAACAGAGAGGCAGAGTACTAACAAATGAACTTTCTACAAGGAAATCGTTGAAATTCATGTGAGTTCTATTACCTTTTTTATATAATC

Coding sequence (CDS)

ACGGTGGCTAGTAGTGAAGATGGGTCGACGGTAGAACAAGATGCAATAGCACTAAAGCACCCCAATCCCATCTATGTCCTCGATGGCTCGTTATATAGAGATGATGAAGCATCTCCTATGAAAAAAATTACGATTTCACTTCTGGAAAGTATAGGGAAGAGTGAGTGTGATTTGCCTGTATTTTGCGAGTTTCATCTTCCATATAATCATCTCTTCCATTTTTCGAGCCTTTCTCCTCCACTTGTGCCATTATAG

Protein sequence

TVASSEDGSTVEQDAIALKHPNPIYVLDGSLYRDDEASPMKKITISLLESIGKSECDLPVFCEFHLPYNHLFHFSSLSPPLVPL

Homology

[Close]

BLAST of MELO3C028605.2 vs. NCBI nr
Match: XP_008453286.1 (PREDICTED: protein LONGIFOLIA 2 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 2   VASSEDGSTVEQDAIALKHPNPIYVLDGSLYRDDEASPMKKITISL 48
           VASSEDGSTVEQDAIAL+HP+P+ VLDGSLYRDDEASP+KKITISL
Sbjct: 742 VASSEDGSTVEQDAIALEHPSPVSVLDGSLYRDDEASPVKKITISL 787

[Close]

BLAST of MELO3C028605.2 vs. NCBI nr
Match: XP_011648480.1 (PREDICTED: protein LONGIFOLIA 1 [Cucumis sativus] >KGN63735.1 hypothetical protein Csa_1G014320 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 2   VASSEDGSTVEQDAIALKHPNPIYVLDGSLYRDDEASPMKKITISL 48
           VAS EDGSTVEQDAIAL+HP+P+ VLDGSLYRDDE SP+KKITISL
Sbjct: 743 VASREDGSTVEQDAIALEHPSPVSVLDGSLYRDDETSPVKKITISL 788

[Close]

BLAST of MELO3C028605.2 vs. NCBI nr
Match: XP_022135288.1 (protein LONGIFOLIA 1-like [Momordica charantia] >XP_022135289.1 protein LONGIFOLIA 1-like [Momordica charantia] >XP_022135290.1 protein LONGIFOLIA 1-like [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 2   VASSEDGSTVEQDAIALKHPNPIYVLDGSLYRDDEASPMKKITISL 48
           V SSEDGST+ QD IAL+HP+P+ VLD SLYRDDEASP+K+IT SL
Sbjct: 749 VTSSEDGSTINQDTIALEHPSPVSVLDASLYRDDEASPVKQITTSL 794

[Close]

BLAST of MELO3C028605.2 vs. NCBI nr
Match: XP_023531283.1 (protein LONGIFOLIA 2-like [Cucurbita pepo subsp. pepo] >XP_023531284.1 protein LONGIFOLIA 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 2   VASSEDGSTVEQDAIALKHPNPIYVLDGSLYRDDEASPMKKITISLLESIGKSEC 57
           +A  EDGST+EQD +A++HP+P+ VLDGSLYRDDE SP+KKIT  L  S+   +C
Sbjct: 666 MAVGEDGSTIEQDTLAVEHPSPVSVLDGSLYRDDEPSPVKKITTILDASLKGDDC 720

[Close]

BLAST of MELO3C028605.2 vs. NCBI nr
Match: XP_022933933.1 (protein LONGIFOLIA 2-like [Cucurbita moschata] >XP_022933934.1 protein LONGIFOLIA 2-like [Cucurbita moschata])

HSP 1 Score: 72.8 bits (177), Expect = 6.3e-10
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 2   VASSEDGSTVEQDAIALKHPNPIYVLDGSLYRDDEASPMKKITISLLESIGKSEC 57
           +A  EDGST+EQDA+A++HP+P+ VLD SLYRDDE SP+KKIT  L  S+   +C
Sbjct: 666 MAIGEDGSTIEQDALAVEHPSPVSVLDDSLYRDDEPSPVKKITTILDASLKGDDC 720

[Close]

BLAST of MELO3C028605.2 vs. TAIR10
Match: AT1G74160.1 (unknown protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.5e-05
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 5   SEDGSTVEQDAIALKHPNPIYVLDGSLYRDDEASPMK 42
           SEDG +     +AL+HP+PI VLD S YR+ E SP+K
Sbjct: 707 SEDGLSANLSLVALEHPSPISVLDASTYRETEPSPVK 743

[Close]

BLAST of MELO3C028605.2 vs. TrEMBL
Match: tr|A0A1S3BVW9|A0A1S3BVW9_CUCME (protein LONGIFOLIA 2 OS=Cucumis melo OX=3656 GN=LOC103494052 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.1e-14
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 2   VASSEDGSTVEQDAIALKHPNPIYVLDGSLYRDDEASPMKKITISL 48
           VASSEDGSTVEQDAIAL+HP+P+ VLDGSLYRDDEASP+KKITISL
Sbjct: 742 VASSEDGSTVEQDAIALEHPSPVSVLDGSLYRDDEASPVKKITISL 787

[Close]

BLAST of MELO3C028605.2 vs. TrEMBL
Match: tr|A0A0A0LPB5|A0A0A0LPB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014320 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.0e-13
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 2   VASSEDGSTVEQDAIALKHPNPIYVLDGSLYRDDEASPMKKITISL 48
           VAS EDGSTVEQDAIAL+HP+P+ VLDGSLYRDDE SP+KKITISL
Sbjct: 743 VASREDGSTVEQDAIALEHPSPVSVLDGSLYRDDETSPVKKITISL 788

[Close]

BLAST of MELO3C028605.2 vs. TrEMBL
Match: tr|A0A200QVV4|A0A200QVV4_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1813g36 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-04
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 5   SEDGSTVEQDAIALKHPNPIYVLDGSLYRDDEASPMKKITISLLESIGKSECDLPVFCEF 64
           SEDGS  E   +A + P+P+ VLD S YRDD  SP K I+ S ++   ++    P  CE 
Sbjct: 765 SEDGSLTEFTTVAPEQPSPVSVLDASFYRDDLPSPGKNISDSFIDIKMQNSDGFP--CEE 824

Query: 65  HLPYNHLFHFSSLSPP 81
               ++L+H S  + P
Sbjct: 825 EWKPDNLYHLSGDTRP 838

The following BLAST results are available for this feature:

BLAST of MELO3C028605.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453286.1	1.2e-13	89.13	PREDICTED: protein LONGIFOLIA 2 [Cucumis melo]	[more]
XP_011648480.1	1.4e-12	84.78	PREDICTED: protein LONGIFOLIA 1 [Cucumis sativus] >KGN63735.1 hypothetical prote...	[more]
XP_022135288.1	2.8e-10	73.91	protein LONGIFOLIA 1-like [Momordica charantia] >XP_022135289.1 protein LONGIFOL...	[more]
XP_023531283.1	2.8e-10	60.00	protein LONGIFOLIA 2-like [Cucurbita pepo subsp. pepo] >XP_023531284.1 protein L...	[more]
XP_022933933.1	6.3e-10	60.00	protein LONGIFOLIA 2-like [Cucurbita moschata] >XP_022933934.1 protein LONGIFOLI...	[more]

BLAST of MELO3C028605.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G74160.1	1.5e-05	54.05	unknown protein	[more]

BLAST of MELO3C028605.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028605.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BVW9\|A0A1S3BVW9_CUCME	8.1e-14	89.13	protein LONGIFOLIA 2 OS=Cucumis melo OX=3656 GN=LOC103494052 PE=4 SV=1	[more]
tr\|A0A0A0LPB5\|A0A0A0LPB5_CUCSA	9.0e-13	84.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014320 PE=4 SV=1	[more]
tr\|A0A200QVV4\|A0A200QVV4_9MAGN	7.6e-04	38.16	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1813g36 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051513	regulation of monopolar cell growth
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028605.2.1	MELO3C028605.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C028605.2	Silver-seed gourd	carmedB0204
MELO3C028605.2	Silver-seed gourd	carmedB1050
MELO3C028605.2	Cucumber (Chinese Long) v3	cucmedB459
MELO3C028605.2	Cucumber (Chinese Long) v3	cucmedB536
MELO3C028605.2	Watermelon (97103) v2	medwmbB164
MELO3C028605.2	Wax gourd	medwgoB212
MELO3C028605.2	Wax gourd	medwgoB236
MELO3C028605.2	Cucumber (Gy14) v2	cgybmedB401
MELO3C028605.2	Cucumber (Gy14) v2	cgybmedB465
MELO3C028605.2	Cucumber (Gy14) v1	cgymedB119
MELO3C028605.2	Cucumber (Gy14) v1	cgymedB180
MELO3C028605.2	Cucurbita maxima (Rimu)	cmamedB102
MELO3C028605.2	Cucurbita maxima (Rimu)	cmamedB108
MELO3C028605.2	Cucurbita maxima (Rimu)	cmamedB534
MELO3C028605.2	Cucurbita maxima (Rimu)	cmamedB593
MELO3C028605.2	Cucurbita moschata (Rifu)	cmomedB093
MELO3C028605.2	Cucurbita moschata (Rifu)	cmomedB521
MELO3C028605.2	Cucurbita pepo (Zucchini)	cpemedB261
MELO3C028605.2	Cucurbita pepo (Zucchini)	cpemedB317
MELO3C028605.2	Cucurbita pepo (Zucchini)	cpemedB717
MELO3C028605.2	Wild cucumber (PI 183967)	cpimedB450
MELO3C028605.2	Wild cucumber (PI 183967)	cpimedB523
MELO3C028605.2	Cucumber (Chinese Long) v2	cumedB442
MELO3C028605.2	Cucumber (Chinese Long) v2	cumedB509
MELO3C028605.2	Melon (DHL92) v3.6.1	medmedB039
MELO3C028605.2	Bottle gourd (USVL1VR-Ls)	lsimedB067
MELO3C028605.2	Bottle gourd (USVL1VR-Ls)	lsimedB101
MELO3C028605.2	Watermelon (Charleston Gray)	medwcgB190
MELO3C028605.2	Watermelon (97103) v1	medwmB233