MELO3C018508.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018508.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	E3 ubiquitin-protein ligase RLIM
Location	chr01 : 734207 .. 736728 (-)
Sequence length	1163

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCAATCTGTCCTCTACCGCAAGTAACCAAGCAAATCTCCTCTCCATTACCTTCAACTTCCATCCACATTTCTACGAAATTTCGACTCCATTTCCTCCCAGTTTCAAACCCTTTCCGTTTTTCATTCATTCAAATTCAGATTCTACGCTAAATTTTGAGTGAAAACAAGCATAGAACCGGCTGAGTTTGTGCATGACGAGCGCTTCGGAGCTGTTTTATTGTCGGAGGTACAGATTTGGTCGTACTGACTCTGACTTGGGCCTTGATTCTGAGCCTCCCGATCGGAATCTTCAGTATCAACGCCGTCATCATGGTCACAATGCCAATCACCGCCGCGATTTGAACTCCTGTGGCGATTTCCGCCGTTCCTCGTTGCAAGAACGTCGTCAATCTCCCCGGTTTTTTAACCCTGTAAGAAGGATTAAACAAAATTTGCTAGATTCTGGGCTTATGTTACTTGACAATATATTTTTTTTTTTTTTTACTTCGATGAAGTATATATTAACCGGTTGAGAATAGTTGGAATTGGGAGAACTGTTCATAATTGGTTTCGATTGGGAAATTTTAAGCGTTTCCGACTTAAAATTTCCTCTAAACTGTAGAATCTGTTGGGAATATGTTGAAAATATCAGATTTGCCCTAATTTATCAGCTTAGGTTGTTGGTATGGTTTTATTTGGTTCATGTCCTAAGAATAATGTCATTTGTACTTAGCTATGGATTGATCCAACAAACGACTCTATTGATAACCATTTAGTTTTTTGGCTTTGAAAATTAAGCTTGTTAAAGTTGCTTCCAAGTTCCAACTATGGATTTCTTTGTTTTGTTTATGTTTTCAAAATCCAGGCTTAAAGGAATAGGTTTTAGAAGCTTGTTTTTTTTTTAAAAAAAAAATTGGCTATAGATTCAAATGGTTATCAAATTGATCTCTAGTCAAGCTATTGATTTGATTATTGTTATTCTTCAGTGATAATTCTGTTTTCCATTGCTGTGAAATAATTAGAACCAGAATAAATCAAATTGCAGAAGTTGGTACTGAGAGTGACGATGGATATAACTTTTCAAGTTTTATTAGCTTCTAAATGCTACTTTGCTATTAAACCATGATTTAATTGGTATGTGTTCATGGAGACGTAATTTGGTTAATTAAGAATGCTTTTCTTTATTATTGTTGTTGTTTTTTTTCTGGGTTGTCATCTCTGTCTGAATGTTATCTTCAATTAGTTTGGAGGCATTAACACTATGTTTTCGTTGTAGCTTTCCGTTGATCGATCGCCTGCACAGTCTGACTCAGCTACGAGCGTTGGTTCTAGAAATAATATCAATGGAAATACTCAGAATAGCTTGAGGTCTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCTGTTTTACTTGCTAGAGAAAGGCTTCTCGAGAGATTGAGAGGTGCCTCTTCTCCAACGAGCAGGTCAGTTCCTATTGTCATGTCTTTGTTTTTCACATCACTATTCAGAAAACTTTTGTGACTTCAATTAGAATGTTCCATGCTATCTCTCTAGTTTTAAGGGCATGTTTGGAAGCAATCTTAAAATTGTTAGAAACACTTTTCTCAGGATCATAATCACTCTGAGACATGTCATCTTTAGTCATTCAAAGTTTCAAAAATCAATTTAATGCTTGATTTCACACGTTTAAACTTGATTTTTATATAATCAAAGTTGATTTTGAATACTTAAAAGAATGCTCGTAAACATATGCTGTGGTATGAATCAATTTGTATGGTTTTCTTTTGTTGATAGGGATTTGGTTTGTATTGTATACTCAGGAAATAGGATCCAATTCTAATAAACTTGTAAAGTTTCAACAAGTTCTGTCCTATACTTTTAAAGATAAATTGTTACTGGGTCACCATCTGAATGTTGAAAGCTAGAATAGATCCCAGCGCTGTAGTGTATTGCTAACCGAATTAGTTTATTCATCAGGAACGCACTTGTCGAAGCATCAAATGGAAATCCAGAAATCTCAACAAGTCGATCGCAGAGGATATCCCTCATCGATGCTGACAGGATGCGATTAGTAGCTGTACCTAGCAAGAGGCCTCCTGGTCTTTCCCAGGATGCAATCAACCGCTTACAACTTGAGGTTTTTATCAATACAGATCGTATCATCGATGACGATGTGATGACAATAACCTCAACAGACTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGATAAGCTCATCCATTTACCTTGTGAGCACAAATTTCACCATGCTTGCTTGGACCGATGGATTAGAACTTGTGGAGAATGCCCATATTGTCGACAACATATCTCACCATCAACCAATATTTTCTAACACGCTTCGCAACTTCGGATTTCATGTCTGTGTAGAAAACTTAGAGACTTTATTATTCGAAGTTGTGGTATTAATCTTTTATACTTCTGTAGTTGATGATGTTCATACTTGTATCCTTTTAAGGTCCTGTATTGACTCCAAATTGTGTGGCAATTTTAATAGCCAAAGAGGTTTGACTGC

mRNA sequence

ACTTCAATCTGTCCTCTACCGCAAGTAACCAAGCAAATCTCCTCTCCATTACCTTCAACTTCCATCCACATTTCTACGAAATTTCGACTCCATTTCCTCCCAGTTTCAAACCCTTTCCGTTTTTCATTCATTCAAATTCAGATTCTACGCTAAATTTTGAGTGAAAACAAGCATAGAACCGGCTGAGTTTGTGCATGACGAGCGCTTCGGAGCTGTTTTATTGTCGGAGGTACAGATTTGGTCGTACTGACTCTGACTTGGGCCTTGATTCTGAGCCTCCCGATCGGAATCTTCAGTATCAACGCCGTCATCATGGTCACAATGCCAATCACCGCCGCGATTTGAACTCCTGTGGCGATTTCCGCCGTTCCTCGTTGCAAGAACGTCGTCAATCTCCCCGGTTTTTTAACCCTCTTTCCGTTGATCGATCGCCTGCACAGTCTGACTCAGCTACGAGCGTTGGTTCTAGAAATAATATCAATGGAAATACTCAGAATAGCTTGAGGTCTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCTGTTTTACTTGCTAGAGAAAGGCTTCTCGAGAGATTGAGAGGTGCCTCTTCTCCAACGAGCAGGAACGCACTTGTCGAAGCATCAAATGGAAATCCAGAAATCTCAACAAGTCGATCGCAGAGGATATCCCTCATCGATGCTGACAGGATGCGATTAGTAGCTGTACCTAGCAAGAGGCCTCCTGGTCTTTCCCAGGATGCAATCAACCGCTTACAACTTGAGGTTTTTATCAATACAGATCGTATCATCGATGACGATGTGATGACAATAACCTCAACAGACTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGATAAGCTCATCCATTTACCTTGTGAGCACAAATTTCACCATGCTTGCTTGGACCGATGGATTAGAACTTGTGGAGAATGCCCATATTGTCGACAACATATCTCACCATCAACCAATATTTTCTAACACGCTTCGCAACTTCGGATTTCATGTCTGTGTAGAAAACTTAGAGACTTTATTATTCGAAGTTGTGGTATTAATCTTTTATACTTCTGTAGTTGATGATGTTCATACTTGTATCCTTTTAAGGTCCTGTATTGACTCCAAATTGTGTGGCAATTTTAATAGCCAAAGAGGTTTGACTGC

Coding sequence (CDS)

ATGACGAGCGCTTCGGAGCTGTTTTATTGTCGGAGGTACAGATTTGGTCGTACTGACTCTGACTTGGGCCTTGATTCTGAGCCTCCCGATCGGAATCTTCAGTATCAACGCCGTCATCATGGTCACAATGCCAATCACCGCCGCGATTTGAACTCCTGTGGCGATTTCCGCCGTTCCTCGTTGCAAGAACGTCGTCAATCTCCCCGGTTTTTTAACCCTCTTTCCGTTGATCGATCGCCTGCACAGTCTGACTCAGCTACGAGCGTTGGTTCTAGAAATAATATCAATGGAAATACTCAGAATAGCTTGAGGTCTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCTGTTTTACTTGCTAGAGAAAGGCTTCTCGAGAGATTGAGAGGTGCCTCTTCTCCAACGAGCAGGAACGCACTTGTCGAAGCATCAAATGGAAATCCAGAAATCTCAACAAGTCGATCGCAGAGGATATCCCTCATCGATGCTGACAGGATGCGATTAGTAGCTGTACCTAGCAAGAGGCCTCCTGGTCTTTCCCAGGATGCAATCAACCGCTTACAACTTGAGGTTTTTATCAATACAGATCGTATCATCGATGACGATGTGATGACAATAACCTCAACAGACTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGATAAGCTCATCCATTTACCTTGTGAGCACAAATTTCACCATGCTTGCTTGGACCGATGGATTAGAACTTGTGGAGAATGCCCATATTGTCGACAACATATCTCACCATCAACCAATATTTTCTAA

Protein sequence

MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSSLQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLARERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHISPSTNIF

Homology

[Close]

BLAST of MELO3C018508.2.1 vs. NCBI nr
Match: XP_008455026.1 (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo])

HSP 1 Score: 524.6 bits (1350), Expect = 1.9e-145
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240

Query: 241 WIRTCGECPYCRQHISPSTNIF 263
           WIRTCGECPYCRQHISPSTNIF
Sbjct: 241 WIRTCGECPYCRQHISPSTNIF 262

[Close]

BLAST of MELO3C018508.2.1 vs. NCBI nr
Match: XP_004136947.1 (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus] >KGN43862.1 hypothetical protein Csa_7G071510 [Cucumis sativus])

HSP 1 Score: 491.5 bits (1264), Expect = 1.8e-135
Identity = 244/256 (95.31%), Postives = 250/256 (97.66%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFYCRRYRFGRTDSDLGLDSEPPDR+LQYQRRHHGHN NHRRDLNSCGDFRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDSATSV SRNNINGNTQNSLRSGLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERLLERLRGASSPT+RNALVEASNGNPE +TSRSQRISL+DADRMRLVAVPSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           QDAINRLQLEVFINTD II+D VMTITSTDCSICLESFTDGDKLIHLPCEHKFHH CLDR
Sbjct: 181 QDAINRLQLEVFINTDHIINDGVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLDR 240

Query: 241 WIRTCGECPYCRQHIS 257
           WIRTCGECPYCRQHI+
Sbjct: 241 WIRTCGECPYCRQHIA 256

[Close]

BLAST of MELO3C018508.2.1 vs. NCBI nr
Match: XP_022988901.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita maxima])

HSP 1 Score: 406.0 bits (1042), Expect = 9.8e-110
Identity = 207/256 (80.86%), Postives = 223/256 (87.11%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELF+ RRYR GRTD+DLGLDSEPPDR+LQYQRRHHGHN NHRR LN+CG FRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQER QSPRF NPL+VDRSPAQS+S  SVGSRNNIN N QNSLR GLSGDSRLPGSVLLA
Sbjct: 61  LQERHQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERL ERLRGASSPT RN LVEA + +PEIS SRSQ ISL DADR+RLV   SKRPPGLS
Sbjct: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
            +AIN LQLE FI+ + IIDDD+ MT TS DCSICL+SF DGDKLIHLPC+HKFHHACL+
Sbjct: 181 LEAINCLQLERFIDIEHIIDDDLTMTTTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLE 240

Query: 241 RWIRTCGECPYCRQHI 256
            WIRTCGECPYCRQHI
Sbjct: 241 PWIRTCGECPYCRQHI 256

[Close]

BLAST of MELO3C018508.2.1 vs. NCBI nr
Match: XP_023529438.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.0 bits (1042), Expect = 9.8e-110
Identity = 207/256 (80.86%), Postives = 224/256 (87.50%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELF+ RRYR GRTD+DLGLDSEPPDR+LQYQRRHHGHN NHRR LN+CG FRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQERRQSPRF NPL+VDRSPAQS+S  SVGSRNNIN N QNSLR GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERL ERLRGASSPT RN LVEA + +PEIS SRSQ ISL DADR+RLV   SKRPPGLS
Sbjct: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDVMTI-TSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           Q+AIN LQLE FI+ + IIDDD+  I TS DCSICL+SF DGDKLIHLPC+HKFHHACL+
Sbjct: 181 QEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLE 240

Query: 241 RWIRTCGECPYCRQHI 256
           +WIRTCGECPYCRQ I
Sbjct: 241 QWIRTCGECPYCRQRI 256

[Close]

BLAST of MELO3C018508.2.1 vs. NCBI nr
Match: XP_022148864.1 (probable E3 ubiquitin-protein ligase RHY1A [Momordica charantia])

HSP 1 Score: 399.4 bits (1025), Expect = 9.2e-108
Identity = 201/257 (78.21%), Postives = 226/257 (87.94%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELF+ RRYR+GRTD+DLGLDSEPPDR+L   RRHHGH   HRRDLN+CG FRRSS
Sbjct: 1   MTSASELFHHRRYRWGRTDADLGLDSEPPDRHLPSPRRHHGHTGTHRRDLNACGAFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGN--TQNSLRSGLSGDSRLPGSVL 120
           LQER QSPRF  PL+ DRS AQSDS TS+GSRN+IN N   +NS R+GLS DSRLPG+VL
Sbjct: 61  LQERHQSPRFSYPLAQDRSAAQSDSVTSLGSRNSINANIHIRNSSRTGLSXDSRLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPG 180
           LARERLLERLRGAS PTSRN L EAS+GNPEISTS+SQRISL+DADR++LV   +KRPPG
Sbjct: 121 LARERLLERLRGASLPTSRNGLTEASDGNPEISTSQSQRISLVDADRLQLVPELNKRPPG 180

Query: 181 LSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACL 240
           LS +A++RLQLEVF+NT+ IIDDD  TITSTDCSICLESFTDGDKLIHLPCEHKFHHACL
Sbjct: 181 LSXEAVDRLQLEVFMNTEHIIDDDPTTITSTDCSICLESFTDGDKLIHLPCEHKFHHACL 240

Query: 241 DRWIRTCGECPYCRQHI 256
           DRW+R+CG+CPYCRQ I
Sbjct: 241 DRWVRSCGDCPYCRQRI 257

[Close]

BLAST of MELO3C018508.2.1 vs. TAIR10
Match: AT1G49850.1 (RING/U-box superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-31
Identity = 100/265 (37.74%), Postives = 133/265 (50.19%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLD-SEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRS 60
           MTSASELF  RR R GR+D  L  D S                      D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSXXXXXXXXXXXXXXXXXXXXXXDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFFNPLSVDRSPAQSDSATS-VGSRNNINGNTQNSLRSGLSGDSRLPGSVL 120
           + + RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRR---FFHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGAS-SPTSRNALVEASNGNPEISTSRSQRISLIDAD------RMRLVAV 180
           LAR+RL ERLRG S S  SR+  V        +   R      ID D       +++   
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRV-------SLDDQRESSFHSIDGDPIFQLAGLQVTYE 180

Query: 181 PSKRPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEH 240
            +K+P GL+QDAIN L  + F + +       +     DCSICLESFT GD LI LPC H
Sbjct: 181 CNKKPQGLTQDAINCLHRQTFSSAE-------VKSEMRDCSICLESFTKGDMLISLPCTH 240

Query: 241 KFHHACLDRWIRTCGECPYCRQHIS 257
            FH +CL+ W+R CG+CP CR+ I+
Sbjct: 241 SFHSSCLNPWLRACGDCPCCRRAIA 248

[Close]

BLAST of MELO3C018508.2.1 vs. TAIR10
Match: AT2G15580.1 (RING/U-box superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-11
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 210 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHI 256
           DC+ICL+ F  G+ L+HLPC HKFH  CL  W+ T   CPYCR  I
Sbjct: 149 DCAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDI 194

[Close]

BLAST of MELO3C018508.2.1 vs. TAIR10
Match: AT1G12760.1 (Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 210 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHISPSTNI 262
           +C ICL ++ DG +L  LPC H FH +C+D+W+     CP C+ +I  S+N+
Sbjct: 352 ECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNL 403

[Close]

BLAST of MELO3C018508.2.1 vs. TAIR10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 178 GLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLP-CEHKFHHA 237
           GL Q AI+ L + ++ N    ++         DC++CL  F+D DKL  LP C H FH  
Sbjct: 180 GLDQTAIDALPVFLYGNVTISLEQPF------DCAVCLNEFSDTDKLRLLPVCSHAFHLH 239

Query: 238 CLDRWIRTCGECPYCRQHISPS 259
           C+D W+ +   CP CR+ +S S
Sbjct: 240 CIDTWLLSNSTCPLCRRSLSTS 255

[Close]

BLAST of MELO3C018508.2.1 vs. TAIR10
Match: AT4G11360.1 (RING-H2 finger A1B)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 202 DVMTITSTDCSICLESFTDGDKLIHLP-CEHKFHHACLDRWIRTCGE--CPYCRQHISP 258
           D++T     C++CL  F   DK+  LP C H FHH CLDRWI  C +  CP CR    P
Sbjct: 76  DLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRNRFLP 134

[Close]

BLAST of MELO3C018508.2.1 vs. Swiss-Prot
Match: sp|Q852U6|RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-30
Identity = 100/265 (37.74%), Postives = 133/265 (50.19%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLD-SEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRS 60
           MTSASELF  RR R GR+D  L  D S                      D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSXXXXXXXXXXXXXXXXXXXXXXDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFFNPLSVDRSPAQSDSATS-VGSRNNINGNTQNSLRSGLSGDSRLPGSVL 120
           + + RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRR---FFHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGAS-SPTSRNALVEASNGNPEISTSRSQRISLIDAD------RMRLVAV 180
           LAR+RL ERLRG S S  SR+  V        +   R      ID D       +++   
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRV-------SLDDQRESSFHSIDGDPIFQLAGLQVTYE 180

Query: 181 PSKRPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEH 240
            +K+P GL+QDAIN L  + F + +       +     DCSICLESFT GD LI LPC H
Sbjct: 181 CNKKPQGLTQDAINCLHRQTFSSAE-------VKSEMRDCSICLESFTKGDMLISLPCTH 240

Query: 241 KFHHACLDRWIRTCGECPYCRQHIS 257
            FH +CL+ W+R CG+CP CR+ I+
Sbjct: 241 SFHSSCLNPWLRACGDCPCCRRAIA 248

[Close]

BLAST of MELO3C018508.2.1 vs. Swiss-Prot
Match: sp|Q9NVW2|RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens OX=9606 GN=RLIM PE=1 SV=3)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-10
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 175 RPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFH 234
           +P GL+++ I+ L +  F   D +            CS+C+  +T+G+KL  LPC H++H
Sbjct: 544 QPRGLTKEQIDNLAMRSFGENDAL----------KTCSVCITEYTEGNKLRKLPCSHEYH 603

Query: 235 HACLDRWIRTCGECPYCRQHISPSTN 261
             C+DRW+     CP CR+ +  S N
Sbjct: 604 VHCIDRWLSENSTCPICRRAVLASGN 619

[Close]

BLAST of MELO3C018508.2.1 vs. Swiss-Prot
Match: sp|Q9WTV7|RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus OX=10090 GN=Rlim PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-10
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 175 RPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFH 234
           +P GL+++ I+ L +  F   D +            CS+C+  +T+G+KL  LPC H++H
Sbjct: 520 QPRGLTKEQIDNLAMRSFGENDAL----------KTCSVCITEYTEGNKLRKLPCSHEYH 579

Query: 235 HACLDRWIRTCGECPYCRQHISPSTN 261
             C+DRW+     CP CR+ +  S N
Sbjct: 580 VHCIDRWLSENSTCPICRRAVLSSGN 595

[Close]

BLAST of MELO3C018508.2.1 vs. Swiss-Prot
Match: sp|Q7XLY8|ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 6.0e-10
Identity = 30/82 (36.59%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 176 PPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLP-CEHKFH 235
           P GL +  IN++ +  +   D  +        +TDCS+CL  F+DG+ L  LP C H FH
Sbjct: 129 PSGLDETLINKITVCKYRRGDGFVH-------TTDCSVCLGEFSDGESLRLLPRCSHAFH 188

Query: 236 HACLDRWIRTCGECPYCRQHIS 257
             C+D W+++   CP CR +I+
Sbjct: 189 QQCIDTWLKSHSNCPLCRANIT 203

[Close]

BLAST of MELO3C018508.2.1 vs. Swiss-Prot
Match: sp|Q641J8|RF12A_XENLA (E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis OX=8355 GN=rnf12-a PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.0e-10
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 175 RPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFH 234
           +P GL+++ I+ L    F   D +            CS+C+  +T+G+KL  LPC H++H
Sbjct: 542 QPRGLTKEQIDNLSTRNFGENDAL----------KTCSVCITEYTEGNKLRKLPCSHEYH 601

Query: 235 HACLDRWIRTCGECPYCRQHISPSTN 261
             C+DRW+     CP CR+ +  ++N
Sbjct: 602 IHCIDRWLSENSTCPICRRAVLVASN 617

[Close]

BLAST of MELO3C018508.2.1 vs. TrEMBL
Match: tr|A0A1S3C156|A0A1S3C156_CUCME (E3 ubiquitin-protein ligase RLIM OS=Cucumis melo OX=3656 GN=LOC103495299 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 1.3e-145
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240

Query: 241 WIRTCGECPYCRQHISPSTNIF 263
           WIRTCGECPYCRQHISPSTNIF
Sbjct: 241 WIRTCGECPYCRQHISPSTNIF 262

[Close]

BLAST of MELO3C018508.2.1 vs. TrEMBL
Match: tr|A0A0A0K6D2|A0A0A0K6D2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 1.2e-135
Identity = 244/256 (95.31%), Postives = 250/256 (97.66%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFYCRRYRFGRTDSDLGLDSEPPDR+LQYQRRHHGHN NHRRDLNSCGDFRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDSATSV SRNNINGNTQNSLRSGLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERLLERLRGASSPT+RNALVEASNGNPE +TSRSQRISL+DADRMRLVAVPSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           QDAINRLQLEVFINTD II+D VMTITSTDCSICLESFTDGDKLIHLPCEHKFHH CLDR
Sbjct: 181 QDAINRLQLEVFINTDHIINDGVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLDR 240

Query: 241 WIRTCGECPYCRQHIS 257
           WIRTCGECPYCRQHI+
Sbjct: 241 WIRTCGECPYCRQHIA 256

[Close]

BLAST of MELO3C018508.2.1 vs. TrEMBL
Match: tr|A0A061E823|A0A061E823_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.2e-44
Identity = 125/262 (47.71%), Postives = 159/262 (60.69%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFY RR R GR DSD  + S   DRN  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSS-IDRN--YNRRHHLGHHNHRHDVDGCDHLRRS- 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNN-INGN-TQNSLRSGLSGDSRLPGSVL 120
               RQ     +  S +RS  + D  TS    +N +N +   +S R  L+ + RLPG+VL
Sbjct: 61  -PHVRQFSSRASSQSQERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRIS-----LIDADRMRLVAVPS 180
           LAR RLLERLRG S   S N LV+A +   EIST  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVS--VSTNRLVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKF 240
           K+PPGL+Q+A++ L LEVF ++  +  D  ++  S DCSICLESF D D L  LPC H+F
Sbjct: 181 KKPPGLTQEALDGLPLEVF-SSGEVDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHRF 240

Query: 241 HHACLDRWIRTCGECPYCRQHI 256
           H ACLD W+RTCG+CPYCR+ I
Sbjct: 241 HLACLDPWVRTCGDCPYCRRSI 254

[Close]

BLAST of MELO3C018508.2.1 vs. TrEMBL
Match: tr|A0A2I4F7M8|A0A2I4F7M8_9ROSI (probable E3 ubiquitin-protein ligase RHY1A isoform X1 OS=Juglans regia OX=51240 GN=LOC108996295 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.3e-43
Identity = 125/288 (43.40%), Postives = 164/288 (56.94%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRH----HGH--NANHRRDLNSCG 60
           MTSASELFY RR R GR+D DLG      DR   Y RRH    H H  + +HRRDL+ C 
Sbjct: 1   MTSASELFYSRRSRLGRSDQDLGF-----DRICPYNRRHHIDLHSHQPDHHHRRDLDGCN 60

Query: 61  DFRRSSLQERRQSPRFFNPLSVDRSPAQSDSATS--VGSRNNINGNTQNSLRSGLSGDSR 120
             RRSS               V+R+  +SD +TS  V S N+   N  +  R  L+ + R
Sbjct: 61  PPRRSSHVSHH----------VERASVRSDRSTSQFVASNNSNTENLSSRSRPRLTENDR 120

Query: 121 LPGSVLLARERLLERLRG--------ASSPTSR------------NALVEASNGNPEIST 180
           LPG+VLLAR RLL+RLRG        +S P S               LV+  +     ST
Sbjct: 121 LPGAVLLARARLLQRLRGEPLSGNRESSRPPSYINRTEIMFEDDIRGLVDVGDMGNRTST 180

Query: 181 SRSQRISLID-----ADRMRLVAVPSKRPPGLSQDAINRLQLEVFINTDRIIDDDVMTIT 240
            +S   S I       +R++L+  P K+PPGL+Q+A++ L++EV+ +T     + V++  
Sbjct: 181 GQSVGSSTITDLSSRIERLQLLQEPKKKPPGLTQEALDCLRMEVYSST----VEGVVSRG 240

Query: 241 STDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHI 256
           S DCSICLE+F +GD LIHLPC HKFH ACLD W+RTCG+CPYCR+ I
Sbjct: 241 SQDCSICLETFLEGDDLIHLPCGHKFHSACLDPWVRTCGDCPYCRRDI 269

[Close]

BLAST of MELO3C018508.2.1 vs. TrEMBL
Match: tr|A0A061E052|A0A061E052_THECC (RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.0e-43
Identity = 125/262 (47.71%), Postives = 160/262 (61.07%), Query Frame = 0


Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFY RR R GR DSD  + S   DRN  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSS-IDRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNN-INGN-TQNSLRSGLSGDSRLPGSVL 120
              R+ S R  +    +RS  + D  TS    +N +N +   +S R  L+ + RLPG+VL
Sbjct: 61  -HVRQFSSRASS--QSERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRIS-----LIDADRMRLVAVPS 180
           LAR RLLERLRG S   S N LV+A +   EIST  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVS--VSTNRLVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKF 240
           K+PPGL+Q+A++ L LEVF ++  +  D  ++  S DCSICLESF D D L  LPC H+F
Sbjct: 181 KKPPGLTQEALDGLPLEVF-SSGEVDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHRF 240

Query: 241 HHACLDRWIRTCGECPYCRQHI 256
           H ACLD W+RTCG+CPYCR+ I
Sbjct: 241 HLACLDPWVRTCGDCPYCRRSI 253

The following BLAST results are available for this feature:

BLAST of MELO3C018508.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455026.1	1.9e-145	100.00	PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo]	[more]
XP_004136947.1	1.8e-135	95.31	PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus] >KGN43862.1 hypoth...	[more]
XP_022988901.1	9.8e-110	80.86	probable E3 ubiquitin-protein ligase RHY1A [Cucurbita maxima]	[more]
XP_023529438.1	9.8e-110	80.86	probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo]	[more]
XP_022148864.1	9.2e-108	78.21	probable E3 ubiquitin-protein ligase RHY1A [Momordica charantia]	[more]

BLAST of MELO3C018508.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49850.1	3.8e-31	37.74	RING/U-box superfamily protein	[more]
AT2G15580.1	4.4e-11	56.52	RING/U-box superfamily protein	[more]
AT1G12760.1	1.1e-09	42.31	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT3G48030.1	1.4e-09	37.80	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family ...	[more]
AT4G11360.1	1.4e-09	45.76	RING-H2 finger A1B	[more]

BLAST of MELO3C018508.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q852U6\|RHY1A_ARATH	6.8e-30	37.74	Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
sp\|Q9NVW2\|RNF12_HUMAN	2.1e-10	33.72	E3 ubiquitin-protein ligase RLIM OS=Homo sapiens OX=9606 GN=RLIM PE=1 SV=3	[more]
sp\|Q9WTV7\|RNF12_MOUSE	2.1e-10	33.72	E3 ubiquitin-protein ligase RLIM OS=Mus musculus OX=10090 GN=Rlim PE=1 SV=2	[more]
sp\|Q7XLY8\|ATL41_ORYSJ	6.0e-10	36.59	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
sp\|Q641J8\|RF12A_XENLA	6.0e-10	32.56	E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis OX=8355 GN=rnf12-a PE=1 SV...	[more]

BLAST of MELO3C018508.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C156\|A0A1S3C156_CUCME	1.3e-145	100.00	E3 ubiquitin-protein ligase RLIM OS=Cucumis melo OX=3656 GN=LOC103495299 PE=4 SV...	[more]
tr\|A0A0A0K6D2\|A0A0A0K6D2_CUCSA	1.2e-135	95.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071510 PE=4 SV=1	[more]
tr\|A0A061E823\|A0A061E823_THECC	6.2e-44	47.71	RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao OX=3641 GN...	[more]
tr\|A0A2I4F7M8\|A0A2I4F7M8_9ROSI	2.3e-43	43.40	probable E3 ubiquitin-protein ligase RHY1A isoform X1 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A061E052\|A0A061E052_THECC	4.0e-43	47.71	RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao OX=3641 GN...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018508.2	MELO3C018508.2	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018508.2.1	MELO3C018508.2.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018508.2.1.five_prime_UTR.1	MELO3C018508.2.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018508.2.1.exon.3	MELO3C018508.2.1.exon.3	exon
MELO3C018508.2.1.exon.2	MELO3C018508.2.1.exon.2	exon
MELO3C018508.2.1.exon.1	MELO3C018508.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018508.2.1.CDS.3	MELO3C018508.2.1.CDS.3	CDS
MELO3C018508.2.1.CDS.2	MELO3C018508.2.1.CDS.2	CDS
MELO3C018508.2.1.CDS.1	MELO3C018508.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018508.2.1.three_prime_UTR.1	MELO3C018508.2.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 211..251 e-value: 1.3E-5 score: 34.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 210..252 e-value: 1.2E-13 score: 51.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 211..252 score: 13.02
None	No IPR available	SMART	SM01197	FANCL_C_2	coord: 207..260 e-value: 0.0099 score: -1.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..111
None	No IPR available	PANTHER	PTHR14155:SF293	E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED	coord: 1..255
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..255
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 210..252 e-value: 2.30366E-16 score: 69.6381
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 198..259
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 170..258 e-value: 1.5E-19 score: 71.4