CsGy7G015000 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G015000
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protease Do-like 2, chloroplastic
Location	Chr7 : 19010472 .. 19011503 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCGCAACAATAAAACTGAATTATGACTTTGAAATGCAAATGGACGTCGTCGTTGGAATTAACAGTAACTTCACGTTTGGTAAATAAAGCGTGGTTTAAGATCTTATAACCAAACCATACACTTCTCATCAAAATTTGTGATTCTTTTCTTGGGAGGCTAATCACACAAAGGCCCAAAGTTCGGCCCAAATTAAATGGGCCGCAGTATTATTCCCAACAAGCCCACTGTTGGGTCAAAACTAGACATGGAGGCGCCAAAATTTCGCCGGGCTTTACCTAATCCTACATTTTCGTTTAAAGGATAAGGAAATTCTCCGGCACTGACCCACCGTCTCCGACGGCATTTGTATGTAAAAGTCTCACATATCTCACTCTCATTTCCTCATTTCCTCATTTCCCTCAGCTCCGAGCAATGGCTGCAGCAATGGCCAGCAGCTGTTTCTCTCCCTTCGACTCCACCGTTAAATTATGCTCCTCACTTCCCTCCCGGAGCCGCCTGCCCAAGTCGCAGCGATCAATTGCTTCGCTCACTCCTACAGCTATCGGTGGTGACCGGAGAAACGCTTCCGGCTCTAAAAGACGTTCCTCTTTGGCCGCTTCTTCTTCTGGCAACTTTGACGGCGAGGTATTTTGTAGTCCTAATGCTTCTTGCTATATCCACTTAAGTGTCGTCCCTTTCTTTTCTTTTTTACATGTTGACGGTATTATAGCTGAGAATTTGGAGTGAAACGTACCGAAATTAGCCTTTTCGTGTCAAGAGACTCGAGCCTTGGTTGATCTTGTGGAGTGATATGTTCTTGCAGCGCGTTGTTTTATTATGGAGTCTTCAGAATTTTCTTTGTGTTGCTCTCCCTCTTTCTTGCTTCTTGCTTAGAACTGCGAGTTCATCTACCCGAAAAATAAGCATTGTGTGTCAAGAGATCGAAATCTCCGTTGAGCTTTTGGAGCGACACGTTCTTGCAGCGTGTTGTCTCAATTTCTAGTCTTCAAAATATCCAACAACGCAATACCAGGACGAGGCGGGAGGCTAG

mRNA sequence

GAGCGCAACAATAAAACTGAATTATGACTTTGAAATGCAAATGGACGTCGTCGTTGGAATTAACAGTAACTTCACGTTTGGTAAATAAAGCGTGGTTTAAGATCTTATAACCAAACCATACACTTCTCATCAAAATTTGTGATTCTTTTCTTGGGAGGCTAATCACACAAAGGCCCAAAGTTCGGCCCAAATTAAATGGGCCGCAGTATTATTCCCAACAAGCCCACTGTTGGGTCAAAACTAGACATGGAGGCGCCAAAATTTCGCCGGGCTTTACCTAATCCTACATTTTCGTTTAAAGGATAAGGAAATTCTCCGGCACTGACCCACCGTCTCCGACGGCATTTGTATGTAAAAGTCTCACATATCTCACTCTCATTTCCTCATTTCCTCATTTCCCTCAGCTCCGAGCAATGGCTGCAGCAATGGCCAGCAGCTGTTTCTCTCCCTTCGACTCCACCGTTAAATTATGCTCCTCACTTCCCTCCCGGAGCCGCCTGCCCAAGTCGCAGCGATCAATTGCTTCGCTCACTCCTACAGCTATCGGTGGTGACCGGAGAAACGCTTCCGGCTCTAAAAGACGTTCCTCTTTGGCCGCTTCTTCTTCTGGCAACTTTGACGGCGAGTCTTCAAAATATCCAACAACGCAATACCAGGACGAGGCGGGAGGCTAG

Coding sequence (CDS)

ATGGCTGCAGCAATGGCCAGCAGCTGTTTCTCTCCCTTCGACTCCACCGTTAAATTATGCTCCTCACTTCCCTCCCGGAGCCGCCTGCCCAAGTCGCAGCGATCAATTGCTTCGCTCACTCCTACAGCTATCGGTGGTGACCGGAGAAACGCTTCCGGCTCTAAAAGACGTTCCTCTTTGGCCGCTTCTTCTTCTGGCAACTTTGACGGCGAGTCTTCAAAATATCCAACAACGCAATACCAGGACGAGGCGGGAGGCTAG

Protein sequence

MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSLAASSSGNFDGESSKYPTTQYQDEAGG

Homology

[Close]

BLAST of CsGy7G015000 vs. NCBI nr
Match: XP_004148888.1 (PREDICTED: protease Do-like 2, chloroplastic [Cucumis sativus] >KGN44832.1 hypothetical protein Csa_7G390110 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 9.9e-27
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSL 60
          MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSL
Sbjct: 1  MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSL 60

Query: 61 AASSSGNFDGE 72
          AASSSGNFDGE
Sbjct: 61 AASSSGNFDGE 71

[Close]

BLAST of CsGy7G015000 vs. NCBI nr
Match: XP_008451432.1 (PREDICTED: protease Do-like 2, chloroplastic [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSL 60
          MAAAMASSCFS FDS +K  SS PSR R   SQRSIASLTPTAI GDRRNASGSKRR+S 
Sbjct: 1  MAAAMASSCFSAFDSALKFRSSFPSRCRPTTSQRSIASLTPTAI-GDRRNASGSKRRTSS 60

Query: 61 AA--SSSGNFDGE 72
          AA  SSSGNFD E
Sbjct: 61 AASFSSSGNFDVE 72

[Close]

BLAST of CsGy7G015000 vs. NCBI nr
Match: XP_022150247.1 (protease Do-like 2, chloroplastic [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 46/71 (64.79%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 1  MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSL 60
          MAA +A++CFS F+STVK   S PSRSR    QRS ASLTP AI GDRR  SGSKRRS  
Sbjct: 1  MAAVVANNCFSVFNSTVKF-RSFPSRSRSATLQRSTASLTPKAI-GDRRTVSGSKRRSYS 60

Query: 61 AASSSGNFDGE 72
          A  SSGN D E
Sbjct: 61 ANYSSGNSDVE 69

[Close]

BLAST of CsGy7G015000 vs. NCBI nr
Match: XP_023514945.1 (protease Do-like 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.8 bits (151), Expect = 6.7e-07
Identity = 49/76 (64.47%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSL 60
          MAAAMASSCFS F ST+   SS PSRS  P   RS A LT TA   DR+ ASGSKRRSS 
Sbjct: 1  MAAAMASSCFSVFSSTINFRSSFPSRSLPPTPLRSTALLTSTAT-ADRKIASGSKRRSS- 60

Query: 61 AASSSGNFD--GESSK 75
          +ASSS NFD  GES++
Sbjct: 61 SASSSLNFDDEGESAR 74

[Close]

BLAST of CsGy7G015000 vs. NCBI nr
Match: XP_022960343.1 (protease Do-like 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 52.8 bits (125), Expect = 6.9e-04
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1  MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKR 57
          MAAAMASSCFS F ST+   SS PSRS  P   RS A LT TA   DR+ ASGSKR
Sbjct: 1  MAAAMASSCFSVFSSTINFRSSFPSRSLPPTPLRSTALLTSTAT-ADRKIASGSKR 55

[Close]

BLAST of CsGy7G015000 vs. TrEMBL
Match: tr|A0A0A0K8X9|A0A0A0K8X9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390110 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.6e-27
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSL 60
          MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSL
Sbjct: 1  MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSL 60

Query: 61 AASSSGNFDGE 72
          AASSSGNFDGE
Sbjct: 61 AASSSGNFDGE 71

[Close]

BLAST of CsGy7G015000 vs. TrEMBL
Match: tr|A0A1S3BQW1|A0A1S3BQW1_CUCME (protease Do-like 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492728 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MAAAMASSCFSPFDSTVKLCSSLPSRSRLPKSQRSIASLTPTAIGGDRRNASGSKRRSSL 60
          MAAAMASSCFS FDS +K  SS PSR R   SQRSIASLTPTAI GDRRNASGSKRR+S 
Sbjct: 1  MAAAMASSCFSAFDSALKFRSSFPSRCRPTTSQRSIASLTPTAI-GDRRNASGSKRRTSS 60

Query: 61 AA--SSSGNFDGE 72
          AA  SSSGNFD E
Sbjct: 61 AASFSSSGNFDVE 72

The following BLAST results are available for this feature:

BLAST of CsGy7G015000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148888.1	9.9e-27	100.00	PREDICTED: protease Do-like 2, chloroplastic [Cucumis sativus] >KGN44832.1 hypot...	[more]
XP_008451432.1	5.6e-14	78.08	PREDICTED: protease Do-like 2, chloroplastic [Cucumis melo]	[more]
XP_022150247.1	2.3e-07	64.79	protease Do-like 2, chloroplastic [Momordica charantia]	[more]
XP_023514945.1	6.7e-07	64.47	protease Do-like 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022960343.1	6.9e-04	64.29	protease Do-like 2, chloroplastic [Cucurbita moschata]	[more]

BLAST of CsGy7G015000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G015000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G015000 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8X9\|A0A0A0K8X9_CUCSA	6.6e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390110 PE=4 SV=1	[more]
tr\|A0A1S3BQW1\|A0A1S3BQW1_CUCME	3.7e-14	78.08	protease Do-like 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492728 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009533	chloroplast stromal thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G015000.1	CsGy7G015000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..80

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G015000	Cucurbita maxima (Rimu)	cgybcmaB921
CsGy7G015000	Cucurbita maxima (Rimu)	cgybcmaB973
CsGy7G015000	Cucurbita maxima (Rimu)	cgybcmaB979
CsGy7G015000	Cucurbita moschata (Rifu)	cgybcmoB904
CsGy7G015000	Cucurbita moschata (Rifu)	cgybcmoB955
CsGy7G015000	Cucurbita moschata (Rifu)	cgybcmoB962
CsGy7G015000	Cucurbita pepo (Zucchini)	cgybcpeB901
CsGy7G015000	Cucurbita pepo (Zucchini)	cgybcpeB906
CsGy7G015000	Cucurbita pepo (Zucchini)	cgybcpeB927
CsGy7G015000	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G015000	Bottle gourd (USVL1VR-Ls)	cgyblsiB472
CsGy7G015000	Bottle gourd (USVL1VR-Ls)	cgyblsiB477
CsGy7G015000	Melon (DHL92) v3.5.1	cgybmeB458
CsGy7G015000	Melon (DHL92) v3.5.1	cgybmeB473
CsGy7G015000	Melon (DHL92) v3.6.1	cgybmedB470
CsGy7G015000	Watermelon (Charleston Gray)	cgybwcgB476
CsGy7G015000	Watermelon (97103) v1	cgybwmB517
CsGy7G015000	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G015000	Silver-seed gourd	carcgybB0118
CsGy7G015000	Silver-seed gourd	carcgybB0120
CsGy7G015000	Silver-seed gourd	carcgybB0849
CsGy7G015000	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G015000	Watermelon (97103) v2	cgybwmbB533
CsGy7G015000	Wax gourd	cgybwgoB662