CsGy7G002740 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGGGATTGAGGTCCAACATTATGACATTACTATTACATTTGTTGTTAATGTTGGCATCAACTGCAAAAGGTCAATCCATTTTTGATATCACTACATATGGTGCCAAACCTAATACTGATATTACTCAGGTAAATATATATTAACTTGATAAATTTCGTACTTTATGTATTTTTTTTTTTGTTTAATCAAATGATTCACAATTTATAGGCTTTGGCAAATGCATGGAAGGATGCATGTGCATCGACCTATTCTAGTAAATTGTTGATTCCAATGGGAGTTTACCATCTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCGGATGGAAGGAACATTACAAGCTCATCCAGATCCAATAGGAGATGGGTTGGTTCTTTTTCAATATATCGATCAATTGACATTGTCAGGCACAGGTGCTTTTGATGGTCAAGGAGAAAAAGGTTGGGAAAAGAATGATTGTCACCTGAAGAAAATATGCACTAAACTTCCTATGGTAAATTAA ATGATGGGATTGAGGTCCAACATTATGACATTACTATTACATTTGTTGTTAATGTTGGCATCAACTGCAAAAGGTCAATCCATTTTTGATATCACTACATATGGTGCCAAACCTAATACTGATATTACTCAGGCTTTGGCAAATGCATGGAAGGATGCATGTGCATCGACCTATTCTAGTAAATTGTTGATTCCAATGGGAGTTTACCATCTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCGGATGGAAGGAACATTACAAGCTCATCCAGATCCAATAGGAGATGGGTTGGTTCTTTTTCAATATATCGATCAATTGACATTGTCAGGCACAGGTGCTTTTGATGGTCAAGGAGAAAAAGGTTGGGAAAAGAATGATTGTCACCTGAAGAAAATATGCACTAAACTTCCTATGGTAAATTAA ATGATGGGATTGAGGTCCAACATTATGACATTACTATTACATTTGTTGTTAATGTTGGCATCAACTGCAAAAGGTCAATCCATTTTTGATATCACTACATATGGTGCCAAACCTAATACTGATATTACTCAGGCTTTGGCAAATGCATGGAAGGATGCATGTGCATCGACCTATTCTAGTAAATTGTTGATTCCAATGGGAGTTTACCATCTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCGGATGGAAGGAACATTACAAGCTCATCCAGATCCAATAGGAGATGGGTTGGTTCTTTTTCAATATATCGATCAATTGACATTGTCAGGCACAGGTGCTTTTGATGGTCAAGGAGAAAAAGGTTGGGAAAAGAATGATTGTCACCTGAAGAAAATATGCACTAAACTTCCTATGGTAAATTAA MMGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFDGQGEKGWEKNDCHLKKICTKLPMVN
BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_011658677.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus]) HSP 1 Score: 290.0 bits (741), Expect = 4.4e-75 Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_008455507.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo]) HSP 1 Score: 259.2 bits (661), Expect = 8.3e-66 Identity = 126/143 (88.11%), Postives = 132/143 (92.31%), Query Frame = 0
BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_011658673.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus]) HSP 1 Score: 240.4 bits (612), Expect = 4.0e-60 Identity = 117/143 (81.82%), Postives = 130/143 (90.91%), Query Frame = 0
BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_004140444.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus]) HSP 1 Score: 218.0 bits (554), Expect = 2.1e-53 Identity = 104/143 (72.73%), Postives = 119/143 (83.22%), Query Frame = 0
BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_011652893.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus]) HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49 Identity = 103/148 (69.59%), Postives = 118/148 (79.73%), Query Frame = 0
BLAST of CsGy7G002740 vs. TAIR10
Match: AT1G78400.1 (Pectin lyase-like superfamily protein) HSP 1 Score: 107.5 bits (267), Expect = 7.3e-24 Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0
BLAST of CsGy7G002740 vs. TAIR10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein) HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21 Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 0
BLAST of CsGy7G002740 vs. TAIR10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein) HSP 1 Score: 98.6 bits (244), Expect = 3.4e-21 Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 0
BLAST of CsGy7G002740 vs. TAIR10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein) HSP 1 Score: 98.2 bits (243), Expect = 4.4e-21 Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 0
BLAST of CsGy7G002740 vs. TAIR10
Match: AT1G43090.1 (Pectin lyase-like superfamily protein) HSP 1 Score: 97.4 bits (241), Expect = 7.5e-21 Identity = 54/152 (35.53%), Postives = 83/152 (54.61%), Query Frame = 0
BLAST of CsGy7G002740 vs. Swiss-Prot
Match: sp|Q05967|PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 6.3e-25 Identity = 61/134 (45.52%), Postives = 84/134 (62.69%), Query Frame = 0
BLAST of CsGy7G002740 vs. Swiss-Prot
Match: sp|Q40312|PGLR_MEDSA (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 5.3e-24 Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 0
BLAST of CsGy7G002740 vs. Swiss-Prot
Match: sp|Q6H9K0|PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 4.5e-23 Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = 0
BLAST of CsGy7G002740 vs. Swiss-Prot
Match: sp|Q39786|PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.1e-21 Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = 0
BLAST of CsGy7G002740 vs. Swiss-Prot
Match: sp|W8P8Q3|SALK6_KALTU (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3) HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21 Identity = 54/142 (38.03%), Postives = 77/142 (54.23%), Query Frame = 0
BLAST of CsGy7G002740 vs. TrEMBL
Match: tr|A0A1S3C129|A0A1S3C129_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495658 PE=3 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 5.5e-66 Identity = 126/143 (88.11%), Postives = 132/143 (92.31%), Query Frame = 0
BLAST of CsGy7G002740 vs. TrEMBL
Match: tr|A0A1S3CSM1|A0A1S3CSM1_CUCME (polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504474 PE=3 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 7.9e-49 Identity = 106/147 (72.11%), Postives = 116/147 (78.91%), Query Frame = 0
BLAST of CsGy7G002740 vs. TrEMBL
Match: tr|A0A1S4E3K9|A0A1S4E3K9_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103500563 PE=3 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 7.4e-47 Identity = 103/145 (71.03%), Postives = 113/145 (77.93%), Query Frame = 0
BLAST of CsGy7G002740 vs. TrEMBL
Match: tr|A0A1S3B3X5|A0A1S3B3X5_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 4.8e-46 Identity = 93/146 (63.70%), Postives = 117/146 (80.14%), Query Frame = 0
BLAST of CsGy7G002740 vs. TrEMBL
Match: tr|A0A1S3BML3|A0A1S3BML3_CUCME (LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491497 PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 8.2e-46 Identity = 96/146 (65.75%), Postives = 114/146 (78.08%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |