CsGy6G012700 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTGTGATAGCGCTCCATCCATCACGTTAATCGATGAAATAGATTACTTGTGCGGTCGAGGAGGTGAATGTAATGAAAATGAAGCTTTTAGACGTATCAAGACAGAACTTCTTATGCAAATGCAAGTATGGTGTTTGTGAAGCAACAATATTTACACAGTAAAAAGAGAGGGATTTATTACCATCTTGTCTTATGTTTCTTGTGCCTTTTTTCATTGTCTTAGCGAATGCTTATTTGCGGAAGATACCTTTTCAGGAAATAACGTTTCAAAACTATATATCTCTTTGCATCTGTAGGGTGTAGGACACAACGATAATAAAATTCTTGTTTTTGCTACAACACAATACACCCTATGCTTTGGATCAGGTCAAGAGAGAATATGTATACTTCCATATTATGCTAAGGATTAAGGAAACACAATGCATGTTTGATTTATAAGTAGTGTTTTCAGGCCATTCGTCGACAATTTGACGAACGGATATACATCCCTCTTCCTGATTTGAACGCAAGGCAATATATATTCAAAGTACTGAAAGTTACATTTTCTCTTCATCTATACATAGTTCCTTTTTTTTTTCCTTGGGGGTAAGAAATAAGCTTTGTTAATGTGCCTATTTAAATAGGTGCATTTAGGCGATACTCCAAATAATTTGACAGAAGGAGGTTTTGAAAGCTTGACACTTAGAACAGAAGGTTTTTCAGGCTCAAATATTTCAGTTTGTGCGAGTGTACAATATTATTTGTGTGGATTGAATTCTTATTGTTGGTGTTTTGTCATTCCTTTTAGTCCATAGGTAGTTCATGCACCCCTTGAACTGGCAGGTGAAGGATGTGCTCTCCCAACGTATATTCATGTCTTAA ATGGCTTGTGATAGCGCTCCATCCATCACGTTAATCGATGAAATAGATTACTTGTGCGGTCGAGGAGGTGAATGTAATGAAAATGAAGCTTTTAGACGTATCAAGACAGAACTTCTTATGCAAATGCAAGGTGTAGGACACAACGATAATAAAATTCTTGTTTTTGCTACAACACAATACACCCTATGCTTTGGATCAGGCGATACTCCAAATAATTTGACAGAAGGAGGTTTTGAAAGCTTGACACTTAGAACAGAAGGTTTTTCAGGCTCAAATATTTCAGTTTGTGCGAGTGTGAAGGATGTGCTCTCCCAACGTATATTCATGTCTTAA ATGGCTTGTGATAGCGCTCCATCCATCACGTTAATCGATGAAATAGATTACTTGTGCGGTCGAGGAGGTGAATGTAATGAAAATGAAGCTTTTAGACGTATCAAGACAGAACTTCTTATGCAAATGCAAGGTGTAGGACACAACGATAATAAAATTCTTGTTTTTGCTACAACACAATACACCCTATGCTTTGGATCAGGCGATACTCCAAATAATTTGACAGAAGGAGGTTTTGAAAGCTTGACACTTAGAACAGAAGGTTTTTCAGGCTCAAATATTTCAGTTTGTGCGAGTGTGAAGGATGTGCTCTCCCAACGTATATTCATGTCTTAA MACDSAPSITLIDEIDYLCGRGGECNENEAFRRIKTELLMQMQGVGHNDNKILVFATTQYTLCFGSGDTPNNLTEGGFESLTLRTEGFSGSNISVCASVKDVLSQRIFMS
BLAST of CsGy6G012700 vs. NCBI nr
Match: XP_008458578.1 (PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X1 [Cucumis melo]) HSP 1 Score: 156.4 bits (394), Expect = 5.7e-35 Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 0
BLAST of CsGy6G012700 vs. NCBI nr
Match: XP_008458579.1 (PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Cucumis melo]) HSP 1 Score: 156.4 bits (394), Expect = 5.7e-35 Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 0
BLAST of CsGy6G012700 vs. NCBI nr
Match: XP_023513232.1 (protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28 Identity = 71/110 (64.55%), Postives = 81/110 (73.64%), Query Frame = 0
BLAST of CsGy6G012700 vs. NCBI nr
Match: KOM44090.1 (hypothetical protein LR48_Vigan05g169500 [Vigna angularis]) HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28 Identity = 72/110 (65.45%), Postives = 80/110 (72.73%), Query Frame = 0
BLAST of CsGy6G012700 vs. NCBI nr
Match: PPS04267.1 (hypothetical protein GOBAR_AA16382 [Gossypium barbadense]) HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27 Identity = 71/110 (64.55%), Postives = 80/110 (72.73%), Query Frame = 0
BLAST of CsGy6G012700 vs. TAIR10
Match: AT2G27600.1 (AAA-type ATPase family protein) HSP 1 Score: 119.0 bits (297), Expect = 1.8e-27 Identity = 69/135 (51.11%), Postives = 81/135 (60.00%), Query Frame = 0
BLAST of CsGy6G012700 vs. TAIR10
Match: AT1G80350.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06 Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 0
BLAST of CsGy6G012700 vs. TAIR10
Match: AT2G34560.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06 Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 0
BLAST of CsGy6G012700 vs. TAIR10
Match: AT1G02890.1 (AAA-type ATPase family protein) HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05 Identity = 21/59 (35.59%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of CsGy6G012700 vs. TAIR10
Match: AT4G02480.1 (AAA-type ATPase family protein) HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05 Identity = 21/59 (35.59%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of CsGy6G012700 vs. Swiss-Prot
Match: sp|Q9ZNT0|VPS4_ARATH (Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 3.3e-26 Identity = 69/135 (51.11%), Postives = 81/135 (60.00%), Query Frame = 0
BLAST of CsGy6G012700 vs. Swiss-Prot
Match: sp|Q9UN37|VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens OX=9606 GN=VPS4A PE=1 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15 Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 0
BLAST of CsGy6G012700 vs. Swiss-Prot
Match: sp|Q8VEJ9|VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus OX=10090 GN=Vps4a PE=1 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15 Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 0
BLAST of CsGy6G012700 vs. Swiss-Prot
Match: sp|Q793F9|VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus OX=10116 GN=Vps4a PE=1 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15 Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 0
BLAST of CsGy6G012700 vs. Swiss-Prot
Match: sp|Q0VD48|VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus OX=9913 GN=VPS4B PE=2 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15 Identity = 54/135 (40.00%), Postives = 70/135 (51.85%), Query Frame = 0
BLAST of CsGy6G012700 vs. TrEMBL
Match: tr|A0A1S3C864|A0A1S3C864_CUCME (protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497939 PE=3 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 3.8e-35 Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 0
BLAST of CsGy6G012700 vs. TrEMBL
Match: tr|A0A1S3C8R9|A0A1S3C8R9_CUCME (protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497939 PE=3 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 3.8e-35 Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 0
BLAST of CsGy6G012700 vs. TrEMBL
Match: tr|A0A0L9UMH3|A0A0L9UMH3_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g169500 PE=3 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 2.6e-28 Identity = 72/110 (65.45%), Postives = 80/110 (72.73%), Query Frame = 0
BLAST of CsGy6G012700 vs. TrEMBL
Match: tr|A0A2P5XLR1|A0A2P5XLR1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA16382 PE=3 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 7.6e-28 Identity = 71/110 (64.55%), Postives = 80/110 (72.73%), Query Frame = 0
BLAST of CsGy6G012700 vs. TrEMBL
Match: tr|A0A0D9Y320|A0A0D9Y320_9ORYZ (Uncharacterized protein OS=Oryza glumipatula OX=40148 PE=3 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 2.4e-26 Identity = 71/135 (52.59%), Postives = 84/135 (62.22%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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