CsGy6G009090.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAATAATTTGAATAAGCAAGCTAGTAACTATAAAAATAATAAAAATTTGAATCAGATAAAATGGAAATAGAATTAAGAGAAACTCAATTTTTTATGGATCTTTAGAAACATTCCTCAAAATTTAAAAGCAAAGAACGAGAACTGTTATAAAATTTCTTTAAAAAACTGATAAACAAAAACATGAAATAAGATCTGTTATCAAACGAAACCTAAGTCTTCATCTTTAAACCTATAATAATGAGGAGCAGGGATAATCCTAGTTTGTAAGAAGAAAAACTCCCAGGTGGCAGGGAGGTGGTGTGGCCCAGTCCAAGGAGGATTAAGCCAACTTGTTTCATCTCTCTGAATTCTGAGGTGCAAAACGATTTCAATTCTTAATTACATAAATGGCCACTCTGTTCAACAATTCGGCACCGGCAGTGACAAGAAGCGGTGACCGCGTTTATGTGGCGGCTGTGCCACTAAGAGCAACAAAAGGCCCTGCCCAACTGCTTGCTTCTGCAGCTTACTCTTTCAACTTCTGGGATTTCCAGCATTTCATGGTTATCATTTCACCACCATCCTCCCCAACTTCTCACTCTCGGGTTCTCTTCTTTTCCAATTGCATTCTCCTTTATCCTTTCTTACCCACCTCTAATTTATGGGGTTCATTCAAGGGCTTCTGCCTACACACACACACACACACACACCTTGGGGCATCTCCAATTTCTATTCAAATTTACTGCTTAATTGGGTGGATTGACTGGCGTTTCTTGTTGTTAGAGATGATTTCAGGCATTAGTTTTTGATTTTCAACCTAAGGATCCGGAAGATATACAAGTGGCACTGGCTGCTCTTTCTGGAAAACCAGTTCCAGGTCCGGTGTACTACTCTTTTAACTTACGCTCATTGGATGCTTTTCGTTTAAATCTAAATGATGGGTTTTCATTTTCCTTTAACAGTGTTCAAACTGATGAATGAATGCTCATTGCACCCCATTGCCTTCTTAAATTTGACATATGTCTGTGAGAGAGGTTAAGAAATTGACAATCAAGATAAACAGTATCAAGTAAACAAAAGAGAATCTACCTAAGGATTTTGTGATTCACTAAAAGTAGTGTGTTTGTTAGTTAGCTCCATTGCTTAAAAGAGCAATTTATTATATAAGAAAATATTAGATTACCAACTCTAGAGTTGAGAGTTATTTAGCAAACTCCTCCAAATTTGAAGTTCAAAATCGTAAATATCATAAACAACACAAATACAAATGCAACTTAGTCAATGAGGCTCGTGTTTGGTGATGTGGAGCGGGAATTCTAACAAGATGAATGAAATAGTACATATTTGCGTTTATCTTCTGTGAAGCTTATGTTGACGTGCAATTGGGATTACTGTTCATTTGTCTTTGTATTTTACAAAGGAAGTGAAATTATTCTAAATAATGAATGATTTGTTAATCGAAAACAAACTAAAAGAAGCTGCCAAATGGTGGCTGATTGGTGAGAGTTTTTACAACATGGATAAATTACTTCATGAGTCTGAGATCGTGCAAATTAAATCTTCATTCTAACTTTTCTCTAAGCTCTAATACTCTTTTTACTAGTACTACACAACTGATTTATTGAAAGCTCAAATTTTCCCTTCTCATGTTCCTGGAACTGAAAACCAATTTGTGCACGTTTAATAGATTTAGTGATTTGGTGTCAGGAGTTGTTCGTGAACGGAAGTTGTCAAGACTGCCAAAGAACAAATGTTCATATGTCGGATATTCAAATGTGAATGCCGTAGAAGTAGCACGTAAGTTCAACGAAACTTGGGATACTAATTTG AAAAATAATTTGAATAAGCAAGCTAGTAACTATAAAAATAATAAAAATTTGAATCAGATAAAATGGAAATAGAATTAAGAGAAACTCAATTTTTTATGGATCTTTAGAAACATTCCTCAAAATTTAAAAGCAAAGAACGAGAACTGTTATAAAATTTCTTTAAAAAACTGATAAACAAAAACATGAAATAAGATCTGTTATCAAACGAAACCTAAGTCTTCATCTTTAAACCTATAATAATGAGGAGCAGGGATAATCCTAGTTTGTAAGAAGAAAAACTCCCAGGTGGCAGGGAGGTGGTGTGGCCCAGTCCAAGGAGGATTAAGCCAACTTGTTTCATCTCTCTGAATTCTGAGGTGCAAAACGATTTCAATTCTTAATTACATAAATGGCCACTCTGTTCAACAATTCGGCACCGGCAGTGACAAGAAGCGGTGACCGCGTTTATGTGGCGGCTGTGCCACTAAGAGCAACAAAAGGCCCTGCCCAACTGCTTGCTTCTGCAGCTTACTCTTTCAACTTCTGGGATTTCCAGCATTTCATGGTTATCATTTCACCACCATCCTCCCCAACTTCTCACTCTCGGGCATTAGTTTTTGATTTTCAACCTAAGGATCCGGAAGATATACAAGTGGCACTGGCTGCTCTTTCTGGAAAACCAGTTCCAGGTCCGGTGTACTACTCTTTTAACTTACGCTCATTGGATGCTTTTCGTTTAAATCTAAATGATGGGTTTTCATTTTCCTTTAACAGTGTTCAAACTGATGAATGAATGCTCATTGCACCCCATTGCCTTCTTAAATTTGACATATGTCTGTGAGAGAGGTTAAGAAATTGACAATCAAGATAAACAGTATCAAGTAAACAAAAGAGAATCTACCTAAGGATTTTGTGATTCACTAAAAGTAGTGTGTTTGTTAGTTAGCTCCATTGCTTAAAAGAGCAATTTATTATATAAGAAAATATTAGATTACCAACTCTAGAGTTGAGAGTTATTTAGCAAACTCCTCCAAATTTGAAGTTCAAAATCGTAAATATCATAAACAACACAAATACAAATGCAACTTAGTCAATGAGGCTCGTGTTTGGTGATGTGGAGCGGGAATTCTAACAAGATGAATGAAATAGTACATATTTGCGTTTATCTTCTGTGAAGCTTATGTTGACGTGCAATTGGGATTACTGTTCATTTGTCTTTGTATTTTACAAAGGAAGTGAAATTATTCTAAATAATGAATGATTTGTTAATCGAAAACAAACTAAAAGAAGCTGCCAAATGGTGGCTGATTGGTGAGAGTTTTTACAACATGGATAAATTACTTCATGAGTCTGAGATCGTGCAAATTAAATCTTCATTCTAACTTTTCTCTAAGCTCTAATACTCTTTTTACTAGTACTACACAACTGATTTATTGAAAGCTCAAATTTTCCCTTCTCATGTTCCTGGAACTGAAAACCAATTTGTGCACGTTTAATAGATTTAGTGATTTGGTGTCAGGAGTTGTTCGTGAACGGAAGTTGTCAAGACTGCCAAAGAACAAATGTTCATATGTCGGATATTCAAATGTGAATGCCGTAGAAGTAGCACGTAAGTTCAACGAAACTTGGGATACTAATTTG ATGGCCACTCTGTTCAACAATTCGGCACCGGCAGTGACAAGAAGCGGTGACCGCGTTTATGTGGCGGCTGTGCCACTAAGAGCAACAAAAGGCCCTGCCCAACTGCTTGCTTCTGCAGCTTACTCTTTCAACTTCTGGGATTTCCAGCATTTCATGGTTATCATTTCACCACCATCCTCCCCAACTTCTCACTCTCGGGCATTAGTTTTTGATTTTCAACCTAAGGATCCGGAAGATATACAAGTGGCACTGGCTGCTCTTTCTGGAAAACCAGTTCCAGGTCCGGTGTACTACTCTTTTAACTTACGCTCATTGGATGCTTTTCGTTTAAATCTAAATGATGGGTTTTCATTTTCCTTTAACAGTGTTCAAACTGATGAATGA MATLFNNSAPAVTRSGDRVYVAAVPLRATKGPAQLLASAAYSFNFWDFQHFMVIISPPSSPTSHSRALVFDFQPKDPEDIQVALAALSGKPVPGPVYYSFNLRSLDAFRLNLNDGFSFSFNSVQTDE
BLAST of CsGy6G009090.1 vs. NCBI nr
Match: XP_011656874.1 (PREDICTED: uncharacterized protein LOC101213272 [Cucumis sativus] >KGN46584.1 hypothetical protein Csa_6G109790 [Cucumis sativus]) HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45 Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0
BLAST of CsGy6G009090.1 vs. NCBI nr
Match: XP_008455964.1 (PREDICTED: uncharacterized protein LOC103496028 [Cucumis melo]) HSP 1 Score: 179.1 bits (453), Expect = 9.4e-42 Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of CsGy6G009090.1 vs. NCBI nr
Match: XP_022948039.1 (uncharacterized protein LOC111451737 [Cucurbita moschata]) HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32 Identity = 81/96 (84.38%), Postives = 83/96 (86.46%), Query Frame = 0
BLAST of CsGy6G009090.1 vs. NCBI nr
Match: XP_022971116.1 (uncharacterized protein LOC111469884 [Cucurbita maxima]) HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32 Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0
BLAST of CsGy6G009090.1 vs. NCBI nr
Match: XP_023534339.1 (uncharacterized protein LOC111795930 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 147.1 bits (370), Expect = 4.0e-32 Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0
BLAST of CsGy6G009090.1 vs. TAIR10
Match: AT2G04790.2 (unknown protein) HSP 1 Score: 99.4 bits (246), Expect = 1.7e-21 Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 0
BLAST of CsGy6G009090.1 vs. TrEMBL
Match: tr|A0A0A0KCM9|A0A0A0KCM9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109790 PE=4 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 1.2e-45 Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0
BLAST of CsGy6G009090.1 vs. TrEMBL
Match: tr|A0A1S3C2U2|A0A1S3C2U2_CUCME (uncharacterized protein LOC103496028 OS=Cucumis melo OX=3656 GN=LOC103496028 PE=4 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 6.2e-42 Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of CsGy6G009090.1 vs. TrEMBL
Match: tr|M5XG96|M5XG96_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G204800 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 2.5e-27 Identity = 65/87 (74.71%), Postives = 72/87 (82.76%), Query Frame = 0
BLAST of CsGy6G009090.1 vs. TrEMBL
Match: tr|A0A251Q342|A0A251Q342_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G204800 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 2.5e-27 Identity = 65/87 (74.71%), Postives = 72/87 (82.76%), Query Frame = 0
BLAST of CsGy6G009090.1 vs. TrEMBL
Match: tr|A0A2P2J9M1|A0A2P2J9M1_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 3.3e-27 Identity = 69/96 (71.88%), Postives = 75/96 (78.12%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
|