CsGy5G010590 (gene) Cucumber (Gy14) v2

Overview
NameCsGy5G010590
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionribonuclease 3-like protein 2
LocationChr5 : 11016093 .. 11021266 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCATCCAACCCCCACTGAGTGGATTTAGAGTCTTTCACATCTTAGTTGGTTCGGACGTCAATATTGTTTGAACCTTGTTTAAGCAGTTTCATAAGTTGAAGTTCTTCGCTCAGTAGCATAAGTTCTTCCGGTTGTTGAAGTGGGTGAATGCCTCATCCGTTATGCTTTGCGATTATTCTTTCTATTGTATATGAGATTCACGAGAAGAAGTGGAAGCATTCCATGCCAAACTGTCTAACTACTCCACATCAGACAGTGAACGATAAAAGTTAGCCCTCCATCAATAGGCAGCGGCGCTCAATCGTAAGCTCGACACCTGCCTGATTCGGAAGCGAGAGGTTAATATGGATAAAGCGGATGAGTTCCATAAATCAACCAAAAGGAAGGAAATTCTATAAATTAGCTCAACTATCAATATATTCTTTTTGGATATCGAACTCTGATTTCTTTGGCTTTACTTCCAAATAGTTAGGTTCTCTTCTTCTGATTTTATCTTTCTTTTCTTCCTTCTCTCTTCCTTTTTTGTTTTTCATGAAGCTGCGAGTGTTTTTTGTTTCTCTTCTATGTCGTGTTATGTCGATTGATGAGAGTAAAGTATGCTAAGCGTGGAATGTGTGCACCTGCTTCTGGTATTCCTATTTATTCTAACATTTATTTTTCTATTATGTATCTGTTCTTTAGTTACTCTTTTATTAGTCGAGGAATAAGATTGCTAAGATTTTCTATTATGTATATGTTCTTTAGTTGCTCTTCTATTAGTCAAGAGGATTAAGAGTGAGTGGTTTGCATTTGGTTGAACAATCTATATTTAATCCCATAGTCTTGGCGTCCTTGGAAATGAGAGTCCTATGAACAAAAATTGAGGATAAAAAGGTATTTCATAGATGGTCACGAGGTCATGAAGGTCTCTTTAGTTCAATAAAAACTTCTCCTTTCTACATATCTTATCTTGTTGTTTGTGATATGTTATCTTATTTCATGACGTGATTATGGTTGAAAGCTCTTAGAAGAAAGTTTGTTTGTGATTCTTGTAGTTGTAGTTGTAGAAGAAAGTTAAGAGTGACTGAACTTAGAAGTTAAAACAAGATTATCTTACTTAGTTTTATCATTAATAGTGAGATGTGAAGGGATAAAAGTCTAGGCAACAGAAAGATTTTACAGAAGCATTTTTCAATTTAATTTGGGAATCCTAAAATACCAGTACATCGATAATATTTAGAAACTAAATTATAAAATACTAAGCATGCTTTTTAATTAAAAGATACAAATAATAAAAAACTTACACAGTTTGACGCTTCTGAATCTACTAGAACTCTTGGGACACCACTCGTCAGAAACTTTTCTATCATTGAGAACCAATTGGCATGAGAAAATATTTAGAAAGAAACTATTTTTGGTGAGAGCAAAAGCATTAATTGAAGAAAAAATATTTTCTTCTACATATTTATAACTCTTTTTGGGTGACTACGAGAGAATCATGAGATTCTATTGATTTTAAAAATATTAAATTAATAGAAGTTTCAAATTAATTAATTAATTAATTACTTAATTAAATTATATTTAAATCATACTTAATGAATAGCCTTCCAACATCTTATATTTTTAAATTCATTTAATTAAATAAAATAAAATTAAACTATTTAACTTAAATTAAATGCGAATCGTATCCAAAATTAAATTTATATAATAAAGTTTGATTAAATACCAATTTTATATTATAACGTATCACTATACATTATACTAATTCCCAAAGTAAATTTGAACAATTCAAATTATAACCAATATAAATAAATCTCATTAGCCTATACGAGCTAGGATGAGGATCTAATTGACTTACAGATTAGAAGCTACAACAATAATTAATTGACTAAACTTATAACCACACTAATTAACATTTGTTAACTGTATGTACACTCCACTAAAGACTTACAGCTGAACTCTTCTCCCTGTAAATATATTTTGTGTCCATGGATATAGACCAATAACAGTAAGTTAATCCTTCACTAGTGTTCATAACACTAACTGGGTCAAACTATCGTTTTACCCTAGTTTACTTCTAGTTCTTAAATACCAGTGCTCTCTATTGAACAACCTGTTTAGGATCCAATCATAAACAAAAACTCCTCTCGTGCCATAGAGAGGGTATGACCCTTTGTTCAAGTCCTGAAACATTATTTAAGGGAATACCCATCTACTTATCCTAAAGTCGAGAATAAGTGATTGTATCTTGTGTGATTATGTTCTAGCTCAGGTCTTTGTCCCCAAAATGATAAGTATATTGAGTTAGCAATCTGACCACTCTCACCGTACAATCAAAGGACATCTTCACGAACAAGAGTTCATATACACTTAATATTAGACTAAGTTACTAGGTCATTTCATTGAAATAGAAACTAACTAGTTAACGAAGTTACATCTAGTAGTTACTATTTCGTAGTCCAATCTTATGAAACTCATTGCATAAGATACCCCACTCACATGTCATTTACACGAACTCGTTGGATCATTGTGTTTATATCAATACAAAGTGAGTCATTCATAGTGTTACTTGGTAAGATACACAACTTATCCTATACTATAATCCTTTAAGTTGATCTTGAATTATCATGTATGTTCTATATACGGTTCAAGACTCATCAAACAACTTGGAGGTTAGTTTATTGGATTTGAGTTATTACGTCAAATTAATATAATCATAACATTTATGAATTATAATATACACTTTATCAATAATATCAATTAATATATTTATAATTTACGAGTTTAGGACATAAATTCCAACAAGATGCTGCCACGATTTCCAATTTGGTGACCTTATGTATCATTAAAGCAGCAAAAGGGTAATGATCCATTCAATATTTCATCCCCTCTAATGTATACACGTAGGAGATTAATATTGTATTACTTTCATGCATACGAGAGGTCATAGGATCCATTTATGTTCTAGAGAATAACATACGATAGACCTTCATATTTGTTCTGTTTTCTTGAGTATAGCTAATAAAAGAGTATGTCTAAGTTGCAGCCTCTTCTACTAATTTTTGAGTCCATCTTGAAAAACACTAGCAAGTACTTCTTCATGTAAGTCACACGAGATCAATTTTTATTTCTACTCCTTCAAACGGTGGTATAATGAAATTTGCTAAGAAACAGCTTACCTGCATTGGCTGCAAGGCTCTACTAGGGTAATTTTAAGAGCTTTTCTATTCTTCATGGTTTTTTGCTAGTTTGAAAGGCATATTTTCTTTTTCTTCTAACGTTCTCTGTAGCAAGTTCAGTATCTTGGTAAGTGAATTATGTATTATTTTTTACTGCACTCCAGCAAGGCAGACAAAACTCTTATAACATATAGTCTAATAAGATCATTACCTCTGAATATTTTACTTGCACCAATCTCTAATTAACTATATCTGATACTCTAGCTTATCCTTGCACTTGTTCAAGGATGAGCAACGGATCATGTTTTATAGTTATAACTATGTTAGGTGCAATGCAGCTGCTCTCGATGATAAGGTATTCAAATTAACCTTCACTTTTCGTTTGTTCTTAAAAACATTTGATTTTTTTGCCCTGTTTTAACTTCATGTCTTTATTTAATCTGACCACTCTCACCCGTACAAATCAAAGGACAATCCTTCACGAACAAGAGTTCATAATACACTTAATATTAAGACTAAGTTACCTAGGTCATTTCATTGAAATAGAAACCTAACTAGTTAACGAAGTTACATCTAGTAGTTACTATTTCGTAGTCCAATCTTATGAAAACTCATTGCATAAGATACCCTCACTCACATGTCATTTACACGAACTCGTTGGATCATTGTGTTTATATCAAATACAAAGTGAGTCATATCCATAGTGTTACTTGGATAAGATACACAACCTTATCCCTATACTATAGATCCTTTTAAGTTGATCTTGAACATTAATCCATGTATGTCTATATACGGTCAAGACTCATCAAACAACTTAGGAGGTTAGTTTATTGGATTTAGTTATTACGTCAAATTAATAATATAATCATAACATTTATGAAATTATAATATACACTTATCAATAATAACAATTAATATATTTATAATTTACGAGTTTAGACATAATCCAACAAGATGCTGCCGATTCCAATTTGGTGACCTTATGTGATCATTAAAGCAGCAAAGGGTAATGACCATTCAATTTTCATCCCTCTATGCTATACACGAGAGATAATATTGTATTACTTTCATGCATACGAAGTCTAGGATCCCATTTTGTTCTAGAGAATAACATACCGATAGACCTTCACTATTTGTTCTGTTTTCTTGAGTATAGCTAATAAAAGAGTATGTCTAAGTGCAGCCTCTTCTACTAATTTTTGAGTCCATCTTGAAAAACACTAGCAAGTAACTTCTTCATGTAAGTCACACGAGATCAATTTTTATTTCTACTCTTCAAACGGTGGTATAATGAAATTGCTAAGAAACAGCTTACCTATAGTCTGATACTCCTAGCTGTATTTCCTTCACTGTATCAAAGGATGAGCAAACGATCATGTTATTCGCAGTAATGCTCTGAAAAATACTTCTAATTAACTTTTTTCTCATTTATCCCCCTCCACCAAGGCCATCTCTCTTTACTTTGAGCTGCTAACATTAGCACTGAGAAGCTTGCTCGTGTTGCAGTCACCCATGGATTGTATAACTATGTTAGGTGCAATGCAGCTGCTCTCGATGATAAGGTATTCAAATTAACCTTCACTTTTCGTTTGTTCTTAAAAACATTTGATTTTTTTTGCCCTGTTTTAACTTCATGTCTTTATTTTTTGATTGTTCAGATAACTCAGTTCCTTATGGTTTGTTGATTCTATTGCCTTAGAAGGTAACTCAGTTCCTTATGGTGGGTTGATGAAAGCTCCTAAAGTTCTTGCTGACATTGTGGAATCAGTGGCTGGTGTTGTCTATGTAGATGTTAATTTTGATCTTCACAAACTATGGGTGGTGAGTTCTTAGTTACATTTGGAGTATGATTATTGTTTAGCTGGGCACCAATTAGCTCTCTTTTTGTCTTCAATGGTTTGTAGATTATTAGGGGTTTGCTAAAGCCTATCTATACTCTTGAAGAGTTACAAGTAGAGCCCCAACCTGTAACTGTACTCTTTGAAATTTTGCCAAAAAAATGGGAAGCAATATAG

mRNA sequence

CCCATCCAACCCCCACTGAGTGGATTTAGAGTCTTTCACATCTTAGTTGGTTCGGACGCAGCGGCGCTCAATCGTAAGCTCGACACCTGCCTGATTCGGAAGCGAGAGTCAAGAGGATTAAGAGATGAGCAACGGATCATGTTTTATAGTTATAACTATGTTAGGTGCAATGCAGCTGCTCTCGATGATAAGTCACCCATGGATTGTATAACTATGTTAGGTGCAATGCAGCTGCTCTCGATGATAAGTTCCTTATGGTTTGTTGATTCTATTGCCTTAGAAGGTAACTCAGTTCCTTATGGTGGGTTGATGAAAGCTCCTAAAGTTCTTGCTGACATTGTGGAATCAGTGGCTGGTGTTGTCTATGTAGATGTTAATTTTGATCTTCACAAACTATGGGTGATTATTAGGGGTTTGCTAAAGCCTATCTATACTCTTGAAGAGTTACAAGTAGAGCCCCAACCTGTAACTGTACTCTTTGAAATTTTGCCAAAAAAATGGGAAGCAATATAG

Coding sequence (CDS)

CCCATCCAACCCCCACTGAGTGGATTTAGAGTCTTTCACATCTTAGTTGGTTCGGACGCAGCGGCGCTCAATCGTAAGCTCGACACCTGCCTGATTCGGAAGCGAGAGTCAAGAGGATTAAGAGATGAGCAACGGATCATGTTTTATAGTTATAACTATGTTAGGTGCAATGCAGCTGCTCTCGATGATAAGTCACCCATGGATTGTATAACTATGTTAGGTGCAATGCAGCTGCTCTCGATGATAAGTTCCTTATGGTTTGTTGATTCTATTGCCTTAGAAGGTAACTCAGTTCCTTATGGTGGGTTGATGAAAGCTCCTAAAGTTCTTGCTGACATTGTGGAATCAGTGGCTGGTGTTGTCTATGTAGATGTTAATTTTGATCTTCACAAACTATGGGTGATTATTAGGGGTTTGCTAAAGCCTATCTATACTCTTGAAGAGTTACAAGTAGAGCCCCAACCTGTAACTGTACTCTTTGAAATTTTGCCAAAAAAATGGGAAGCAATATAG

Protein sequence

PIQPPLSGFRVFHILVGSDAAALNRKLDTCLIRKRESRGLRDEQRIMFYSYNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVLADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPKKWEAI
Homology
[Close]
BLAST of CsGy5G010590 vs. NCBI nr
Match: XP_008449146.1 (PREDICTED: ribonuclease 3-like protein 2 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 2.4e-32
Identity = 79/120 (65.83%), Postives = 88/120 (73.33%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVL 110
           YNYVR NAA +D K                      FVDS+ALEG+SVPYGGLMKAPKVL
Sbjct: 91  YNYVRRNAATMDAKVKE-------------------FVDSVALEGSSVPYGGLMKAPKVL 150

Query: 111 ADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPKKWEAI 170
           ADIVESVAG VYVDVNFDL KLWVIIRGLL+PIYTLEELQVEPQPVTVLF++  +  + +
Sbjct: 151 ADIVESVAGAVYVDVNFDLQKLWVIIRGLLEPIYTLEELQVEPQPVTVLFDVCQRNGKQV 191

[Close]
BLAST of CsGy5G010590 vs. NCBI nr
Match: KGN53951.1 (hypothetical protein Csa_4G192230 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 5.3e-32
Identity = 77/120 (64.17%), Postives = 89/120 (74.17%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVL 110
           YNYVR ++ A+DDK                      FVDS+ALEG+SVPYGG+MKAPKVL
Sbjct: 91  YNYVRRDSPAMDDKVKE-------------------FVDSVALEGSSVPYGGMMKAPKVL 150

Query: 111 ADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPKKWEAI 170
           ADIVESVAG VYVDVNFDL KLWVIIRGLL+PIYTLEELQVEPQPVTVLF++  +  + +
Sbjct: 151 ADIVESVAGAVYVDVNFDLQKLWVIIRGLLEPIYTLEELQVEPQPVTVLFQVCQRNGKQV 191

[Close]
BLAST of CsGy5G010590 vs. NCBI nr
Match: XP_011654357.1 (PREDICTED: ribonuclease 3-like protein 2 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 5.3e-32
Identity = 77/120 (64.17%), Postives = 89/120 (74.17%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVL 110
           YNYVR ++ A+DDK                      FVDS+ALEG+SVPYGG+MKAPKVL
Sbjct: 91  YNYVRRDSPAMDDKVKE-------------------FVDSVALEGSSVPYGGMMKAPKVL 150

Query: 111 ADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPKKWEAI 170
           ADIVESVAG VYVDVNFDL KLWVIIRGLL+PIYTLEELQVEPQPVTVLF++  +  + +
Sbjct: 151 ADIVESVAGAVYVDVNFDLQKLWVIIRGLLEPIYTLEELQVEPQPVTVLFQVCQRNGKQV 191

[Close]
BLAST of CsGy5G010590 vs. NCBI nr
Match: XP_022965096.1 (ribonuclease 3-like protein 2 [Cucurbita maxima])

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 76/120 (63.33%), Postives = 86/120 (71.67%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVL 110
           Y+YVR  A ALDDK                      FVDS+ALE NSVPYGGLMKAPKVL
Sbjct: 91  YHYVRRKAVALDDKVRE-------------------FVDSVALENNSVPYGGLMKAPKVL 150

Query: 111 ADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPKKWEAI 170
           ADIVESVAG +YVDVNFDL +LWVIIRGLL+PIYT E+L+VEPQPVTVLFE+  K  + +
Sbjct: 151 ADIVESVAGAIYVDVNFDLQRLWVIIRGLLEPIYTPEDLEVEPQPVTVLFEVCQKNGKQV 191

[Close]
BLAST of CsGy5G010590 vs. NCBI nr
Match: XP_023551903.1 (ribonuclease 3-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 76/120 (63.33%), Postives = 86/120 (71.67%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVL 110
           Y+YVR  A ALDDK                      FVDS+ALE NSVPYGGLMKAPKVL
Sbjct: 91  YHYVRRKAVALDDKVRE-------------------FVDSVALENNSVPYGGLMKAPKVL 150

Query: 111 ADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPKKWEAI 170
           ADIVESVAG +YVDVNFDL +LWVIIRGLL+PIYT E+L+VEPQPVTVLFE+  K  + +
Sbjct: 151 ADIVESVAGAIYVDVNFDLQRLWVIIRGLLEPIYTPEDLEVEPQPVTVLFEVCQKNGKQV 191

[Close]
BLAST of CsGy5G010590 vs. TAIR10
Match: AT3G20420.1 (RNAse THREE-like protein 2)

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-23
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGN-SVPYGGLMKAPKV 110
           Y+++R NA +LD+K                      F +++  E + SV YGGL+KAPKV
Sbjct: 146 YSFLRRNAPSLDEKVKE-------------------FSEAVGKEDDLSVSYGGLVKAPKV 205

Query: 111 LADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPK 166
           LAD+ ES+AG VYVDVNFDL +LWVI RGLL+PI TL++LQ +PQPV++LF++  K
Sbjct: 206 LADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCHK 242

[Close]
BLAST of CsGy5G010590 vs. TAIR10
Match: AT5G45150.1 (RNAse THREE-like protein 3)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 39/80 (48.75%), Postives = 59/80 (73.75%), Query Frame = 0 

Query: 87  FVDSIALEGNSVPYGGLMKAPKVLADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTL 146
           F +++  E + VPYGGL+KAPK+LAD +ES+A  V++DVN+D+ +LW I R LL+PIYT 
Sbjct: 103 FAEAVRKEDDPVPYGGLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTP 162

Query: 147 EELQVEPQ-PVTVLFEILPK 166
           ++L ++P+ P   LF +  K
Sbjct: 163 DDLLLQPKLPFLTLFRLADK 182

[Close]
BLAST of CsGy5G010590 vs. TAIR10
Match: AT4G15417.1 (RNAse II-like 1)

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-07
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 92  ALEGNSVPYGGLMKAPKVLADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQV 151
           A+E   +   GL+K PKVLADIVES  G +++D N     +W +I+ LL+PI  L+++  
Sbjct: 137 AMEKYPLHSNGLLKVPKVLADIVESTIGAIFMDCN-STETVWKVIKPLLEPIIHLDKM-- 196

Query: 152 EPQPVTVLFEILPKK 167
           +  P+T L E+  K+
Sbjct: 197 KSHPMTELNEMCQKR 208

[Close]
BLAST of CsGy5G010590 vs. TAIR10
Match: AT3G43920.2 (dicer-like 3)

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-07
Identity = 23/59 (38.98%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 95   GNSVPYGGLMKAPKVLADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEP 154
            G S+P    ++ PK L D+VES+AG + +D   DL ++W +   LL P+ T ++LQ+ P
Sbjct: 1312 GRSIP---SIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPP 1367

[Close]
BLAST of CsGy5G010590 vs. TAIR10
Match: AT1G01040.2 (dicer-like 1)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 102  GLMKAPKVLADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEP 154
            G  KAPKVL DIVES+AG +++D   D    W + + LL+P+ T E L + P
Sbjct: 1684 GDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 1735

[Close]
BLAST of CsGy5G010590 vs. Swiss-Prot
Match: sp|Q9LTQ0|RTL2_ARATH (Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RTL2 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.6e-22
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGN-SVPYGGLMKAPKV 110
           Y+++R NA +LD+K                      F +++  E + SV YGGL+KAPKV
Sbjct: 146 YSFLRRNAPSLDEKVKE-------------------FSEAVGKEDDLSVSYGGLVKAPKV 205

Query: 111 LADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPK 166
           LAD+ ES+AG VYVDVNFDL +LWVI RGLL+PI TL++LQ +PQPV++LF++  K
Sbjct: 206 LADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCHK 242

[Close]
BLAST of CsGy5G010590 vs. Swiss-Prot
Match: sp|Q9FKF0|RTL3_ARATH (Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=RTL3 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-16
Identity = 39/80 (48.75%), Postives = 59/80 (73.75%), Query Frame = 0 

Query: 87  FVDSIALEGNSVPYGGLMKAPKVLADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTL 146
           F +++  E + VPYGGL+KAPK+LAD +ES+A  V++DVN+D+ +LW I R LL+PIYT 
Sbjct: 103 FAEAVRKEDDPVPYGGLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTP 162

Query: 147 EELQVEPQ-PVTVLFEILPK 166
           ++L ++P+ P   LF +  K
Sbjct: 163 DDLLLQPKLPFLTLFRLADK 182

[Close]
BLAST of CsGy5G010590 vs. Swiss-Prot
Match: sp|Q6ATG6|RTL2_ORYSJ (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0271300 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 96  NSVPYGG-LMKAPKVLADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQ 155
           ++VPYGG ++KAPKVLADIVE++A  VYVD  FDL KLW + R L +PI T E   ++ Q
Sbjct: 154 STVPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAE--TIDEQ 213

Query: 156 PVTVLFEILPK 166
           PVT+L E+  K
Sbjct: 214 PVTMLHELCQK 222

[Close]
BLAST of CsGy5G010590 vs. Swiss-Prot
Match: sp|Q5N870|DCL3A_ORYSJ (Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica OX=39947 GN=DCL3A PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-07
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 93   LEGNSVP-----YGGLMKAPKVLADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLE 152
            LEG+S+        GL K PKVL DIVES+AG + +D   DL  +W I   LL PI T E
Sbjct: 1351 LEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPE 1410

Query: 153  ELQVEP 154
             L++ P
Sbjct: 1411 NLELPP 1416

[Close]
BLAST of CsGy5G010590 vs. Swiss-Prot
Match: sp|Q8LMR2|DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-06
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 102  GLMKAPKVLADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEP 154
            G  KAPKVL DIVES+AG +++D  +D   +W + + LL P+ T E L + P
Sbjct: 1662 GDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHP 1713

[Close]
BLAST of CsGy5G010590 vs. TrEMBL
Match: tr|A0A1S3BM12|A0A1S3BM12_CUCME (ribonuclease 3-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103491097 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.6e-32
Identity = 79/120 (65.83%), Postives = 88/120 (73.33%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVL 110
           YNYVR NAA +D K                      FVDS+ALEG+SVPYGGLMKAPKVL
Sbjct: 91  YNYVRRNAATMDAKVKE-------------------FVDSVALEGSSVPYGGLMKAPKVL 150

Query: 111 ADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPKKWEAI 170
           ADIVESVAG VYVDVNFDL KLWVIIRGLL+PIYTLEELQVEPQPVTVLF++  +  + +
Sbjct: 151 ADIVESVAGAVYVDVNFDLQKLWVIIRGLLEPIYTLEELQVEPQPVTVLFDVCQRNGKQV 191

[Close]
BLAST of CsGy5G010590 vs. TrEMBL
Match: tr|A0A0A0L1E2|A0A0A0L1E2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192230 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 77/120 (64.17%), Postives = 89/120 (74.17%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVL 110
           YNYVR ++ A+DDK                      FVDS+ALEG+SVPYGG+MKAPKVL
Sbjct: 91  YNYVRRDSPAMDDKVKE-------------------FVDSVALEGSSVPYGGMMKAPKVL 150

Query: 111 ADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPKKWEAI 170
           ADIVESVAG VYVDVNFDL KLWVIIRGLL+PIYTLEELQVEPQPVTVLF++  +  + +
Sbjct: 151 ADIVESVAGAVYVDVNFDLQKLWVIIRGLLEPIYTLEELQVEPQPVTVLFQVCQRNGKQV 191

[Close]
BLAST of CsGy5G010590 vs. TrEMBL
Match: tr|A0A0A0KMG6|A0A0A0KMG6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011670 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.1e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 67  MDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVLADIVESVAGVVYVDVN 126
           MDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVLADIVESVAGVVYVDVN
Sbjct: 1   MDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVLADIVESVAGVVYVDVN 60

Query: 127 FDLHKLWVI 136
           FDLHKLWV+
Sbjct: 61  FDLHKLWVV 69

[Close]
BLAST of CsGy5G010590 vs. TrEMBL
Match: tr|A0A1S3BMA5|A0A1S3BMA5_CUCME (ribonuclease 3-like protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491098 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.9e-26
Identity = 67/120 (55.83%), Postives = 81/120 (67.50%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVL 110
           Y+YVR +AA LDD                   +   F D++ALE NS+PYGGL KAPKVL
Sbjct: 87  YDYVRRSAADLDD-------------------NVREFADAVALEDNSIPYGGLKKAPKVL 146

Query: 111 ADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPKKWEAI 170
           ADIVESVAG +YVDV FDL KLW II+ LLKPIYT E+L+ EPQPVT+LFE+  K  + +
Sbjct: 147 ADIVESVAGAIYVDVEFDLQKLWAIIKDLLKPIYTPEDLEAEPQPVTLLFEVCQKNGKQV 187

[Close]
BLAST of CsGy5G010590 vs. TrEMBL
Match: tr|A0A1S4DXC9|A0A1S4DXC9_CUCME (ribonuclease 3-like protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491098 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.9e-26
Identity = 67/120 (55.83%), Postives = 81/120 (67.50%), Query Frame = 0 

Query: 51  YNYVRCNAAALDDKSPMDCITMLGAMQLLSMISSLWFVDSIALEGNSVPYGGLMKAPKVL 110
           Y+YVR +AA LDD                   +   F D++ALE NS+PYGGL KAPKVL
Sbjct: 87  YDYVRRSAADLDD-------------------NVREFADAVALEDNSIPYGGLKKAPKVL 146

Query: 111 ADIVESVAGVVYVDVNFDLHKLWVIIRGLLKPIYTLEELQVEPQPVTVLFEILPKKWEAI 170
           ADIVESVAG +YVDV FDL KLW II+ LLKPIYT E+L+ EPQPVT+LFE+  K  + +
Sbjct: 147 ADIVESVAGAIYVDVEFDLQKLWAIIKDLLKPIYTPEDLEAEPQPVTLLFEVCQKNGKQV 187

The following BLAST results are available for this feature:
BLAST of CsGy5G010590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449146.12.4e-3265.83PREDICTED: ribonuclease 3-like protein 2 [Cucumis melo][more]
KGN53951.15.3e-3264.17hypothetical protein Csa_4G192230 [Cucumis sativus][more]
XP_011654357.15.3e-3264.17PREDICTED: ribonuclease 3-like protein 2 [Cucumis sativus][more]
XP_022965096.11.0e-3063.33ribonuclease 3-like protein 2 [Cucurbita maxima][more]
XP_023551903.11.0e-3063.33ribonuclease 3-like protein 2 [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy5G010590 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G20420.14.2e-2349.14RNAse THREE-like protein 2[more]
AT5G45150.12.0e-1748.75RNAse THREE-like protein 3[more]
AT4G15417.11.9e-0740.00RNAse II-like 1[more]
AT3G43920.27.2e-0738.98dicer-like 3[more]
AT1G01040.22.1e-0646.15dicer-like 1[more]
BLAST of CsGy5G010590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LTQ0|RTL2_ARATH7.6e-2249.14Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RTL2 PE=1 SV=1[more]
sp|Q9FKF0|RTL3_ARATH3.6e-1648.75Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=RTL3 PE=2 SV=1[more]
sp|Q6ATG6|RTL2_ORYSJ2.9e-1356.34Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0... [more]
sp|Q5N870|DCL3A_ORYSJ4.0e-0746.97Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica OX=39947 GN=DC... [more]
sp|Q8LMR2|DCL1_ORYSJ7.6e-0646.15Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL... [more]
BLAST of CsGy5G010590 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BM12|A0A1S3BM12_CUCME1.6e-3265.83ribonuclease 3-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103491097 PE=4 SV=1[more]
tr|A0A0A0L1E2|A0A0A0L1E2_CUCSA3.5e-3264.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192230 PE=4 SV=1[more]
tr|A0A0A0KMG6|A0A0A0KMG6_CUCSA2.1e-2998.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011670 PE=4 SV=1[more]
tr|A0A1S3BMA5|A0A1S3BMA5_CUCME4.9e-2655.83ribonuclease 3-like protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491098... [more]
tr|A0A1S4DXC9|A0A1S4DXC9_CUCME4.9e-2655.83ribonuclease 3-like protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491098... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity
Vocabulary: INTERPRO
TermDefinition
IPR036389RNase_III_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0006396 RNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G010590.1CsGy5G010590.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3DG3DSA:1.10.1520.10coord: 80..154
e-value: 4.6E-11
score: 44.5
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILYSSF69065RNase III domain-likecoord: 78..144
NoneNo IPR availablePANTHERPTHR14950HELICASE-RELATEDcoord: 95..165
NoneNo IPR availablePANTHERPTHR14950:SF35RIBONUCLEASE 3-LIKE PROTEIN 2-RELATEDcoord: 95..165

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy5G010590Csa5G011670Cucumber (Chinese Long) v2cgybcuB225
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy5G010590Cucurbita maxima (Rimu)cgybcmaB667
CsGy5G010590Cucurbita moschata (Rifu)cgybcmoB645
CsGy5G010590Cucurbita pepo (Zucchini)cgybcpeB663
CsGy5G010590Bottle gourd (USVL1VR-Ls)cgyblsiB312
CsGy5G010590Melon (DHL92) v3.6.1cgybmedB315
CsGy5G010590Watermelon (Charleston Gray)cgybwcgB330
CsGy5G010590Watermelon (97103) v1cgybwmB411
CsGy5G010590Wild cucumber (PI 183967)cgybcpiB227
CsGy5G010590Cucumber (Chinese Long) v3cgybcucB232
CsGy5G010590Watermelon (97103) v2cgybwmbB344