CsGy4G018840 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCAAACATGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGTCACTCTAAACCTTCCGACTTAGAAACCATCACTTGCAAAACCTGCGTCACTCCTTGGCATGTCCCTTGCCTCTCAAACCCCCCTGAAACCCTAGAATCTACTCTTCAGTGGGACTGTCCCGATTGTTCACTCCCTTCTCAGGATGCACTCCTTCCTCCCCCTTCCAATTCTCCACTCCCCATTCACCCTTCTAATGATCTCATTGCTGCGATTCGTGCCATTGAAGCTGATTCTTCCCTTGCTGACTCCGACAAGGCAAAGAAACGCCAGCAGCTGCTTACTGGAAACTCACTCTCCCATGAGATCAATGATGTTAACACTAAACAAGGGGACGATGTTTTGGATTTGTTTGATGAGAGGTTGAACTGTTCTTTCTGCATTCAGTTACCGGATAGGCCAGTCACTGTAAGTTCCTTCTCACATTTTTTCTTTTGCTTCCAATCATTTTATACTTTATTTAATGCAGTTTCCCTTTCATATGTATTCAATGTCAAATGCTGGCCCCATTGTATCTTGATCTTATTGGATTAAGGTTAGTAATGAGGGTTTTCTATTCTTCAATTGCCATTACAGTGAATGA ATGCCAAACATGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGTCACTCTAAACCTTCCGACTTAGAAACCATCACTTGCAAAACCTGCGTCACTCCTTGGCATGTCCCTTGCCTCTCAAACCCCCCTGAAACCCTAGAATCTACTCTTCAGTGGGACTGTCCCGATTGTTCACTCCCTTCTCAGGATGCACTCCTTCCTCCCCCTTCCAATTCTCCACTCCCCATTCACCCTTCTAATGATCTCATTGCTGCGATTCGTGCCATTGAAGCTGATTCTTCCCTTGCTGACTCCGACAAGGCAAAGAAACGCCAGCAGCTGCTTACTGGAAACTCACTCTCCCATGAGATCAATGATGTTAACACTAAACAAGGGGACGATGTTTTGGATTTGTTTGATGAGAGGTTGAACTGTTCTTTCTGCATTCAGTTACCGGATAGGCCAGTCACTGTTAGTAATGAGGGTTTTCTATTCTTCAATTGCCATTACAGTGAATGA ATGCCAAACATGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGTCACTCTAAACCTTCCGACTTAGAAACCATCACTTGCAAAACCTGCGTCACTCCTTGGCATGTCCCTTGCCTCTCAAACCCCCCTGAAACCCTAGAATCTACTCTTCAGTGGGACTGTCCCGATTGTTCACTCCCTTCTCAGGATGCACTCCTTCCTCCCCCTTCCAATTCTCCACTCCCCATTCACCCTTCTAATGATCTCATTGCTGCGATTCGTGCCATTGAAGCTGATTCTTCCCTTGCTGACTCCGACAAGGCAAAGAAACGCCAGCAGCTGCTTACTGGAAACTCACTCTCCCATGAGATCAATGATGTTAACACTAAACAAGGGGACGATGTTTTGGATTTGTTTGATGAGAGGTTGAACTGTTCTTTCTGCATTCAGTTACCGGATAGGCCAGTCACTGTTAGTAATGAGGGTTTTCTATTCTTCAATTGCCATTACAGTGAATGA MPNMVSQLPCDGDGICMLCHSKPSDLETITCKTCVTPWHVPCLSNPPETLESTLQWDCPDCSLPSQDALLPPPSNSPLPIHPSNDLIAAIRAIEADSSLADSDKAKKRQQLLTGNSLSHEINDVNTKQGDDVLDLFDERLNCSFCIQLPDRPVTVSNEGFLFFNCHYSE
BLAST of CsGy4G018840 vs. NCBI nr
Match: XP_011653902.1 (PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Cucumis sativus] >KGN54816.1 hypothetical protein Csa_4G507950 [Cucumis sativus]) HSP 1 Score: 324.7 bits (831), Expect = 1.9e-85 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
BLAST of CsGy4G018840 vs. NCBI nr
Match: XP_008442097.1 (PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Cucumis melo]) HSP 1 Score: 306.6 bits (784), Expect = 5.2e-80 Identity = 145/154 (94.16%), Postives = 148/154 (96.10%), Query Frame = 0
BLAST of CsGy4G018840 vs. NCBI nr
Match: XP_022933744.1 (E3 ubiquitin-protein ligase ORTHRUS 2-like [Cucurbita moschata]) HSP 1 Score: 243.0 bits (619), Expect = 7.1e-61 Identity = 114/151 (75.50%), Postives = 130/151 (86.09%), Query Frame = 0
BLAST of CsGy4G018840 vs. NCBI nr
Match: XP_023531327.1 (E3 ubiquitin-protein ligase ORTHRUS 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 243.0 bits (619), Expect = 7.1e-61 Identity = 114/151 (75.50%), Postives = 130/151 (86.09%), Query Frame = 0
BLAST of CsGy4G018840 vs. NCBI nr
Match: XP_022965844.1 (E3 ubiquitin-protein ligase ORTHRUS 2-like [Cucurbita maxima]) HSP 1 Score: 239.6 bits (610), Expect = 7.8e-60 Identity = 112/151 (74.17%), Postives = 128/151 (84.77%), Query Frame = 0
BLAST of CsGy4G018840 vs. TAIR10
Match: AT1G57820.1 (Zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 137.5 bits (345), Expect = 7.6e-33 Identity = 75/155 (48.39%), Postives = 89/155 (57.42%), Query Frame = 0
BLAST of CsGy4G018840 vs. TAIR10
Match: AT5G39550.1 (Zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 111.7 bits (278), Expect = 4.5e-25 Identity = 64/152 (42.11%), Postives = 83/152 (54.61%), Query Frame = 0
BLAST of CsGy4G018840 vs. TAIR10
Match: AT1G66040.1 (Zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 105.1 bits (261), Expect = 4.2e-23 Identity = 64/152 (42.11%), Postives = 80/152 (52.63%), Query Frame = 0
BLAST of CsGy4G018840 vs. TAIR10
Match: AT1G57800.1 (zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 104.4 bits (259), Expect = 7.1e-23 Identity = 63/164 (38.41%), Postives = 82/164 (50.00%), Query Frame = 0
BLAST of CsGy4G018840 vs. TAIR10
Match: AT1G66050.1 (Zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 104.0 bits (258), Expect = 9.3e-23 Identity = 63/152 (41.45%), Postives = 79/152 (51.97%), Query Frame = 0
BLAST of CsGy4G018840 vs. Swiss-Prot
Match: sp|Q8VYZ0|ORTH2_ARATH (E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana OX=3702 GN=ORTH2 PE=1 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 1.4e-31 Identity = 75/155 (48.39%), Postives = 89/155 (57.42%), Query Frame = 0
BLAST of CsGy4G018840 vs. Swiss-Prot
Match: sp|Q9FKA7|ORTH1_ARATH (E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana OX=3702 GN=ORTH1 PE=1 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 8.1e-24 Identity = 64/152 (42.11%), Postives = 83/152 (54.61%), Query Frame = 0
BLAST of CsGy4G018840 vs. Swiss-Prot
Match: sp|Q9C8E1|ORTH4_ARATH (Putative E3 ubiquitin-protein ligase ORTHRUS 4 OS=Arabidopsis thaliana OX=3702 GN=ORTH4 PE=3 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 7.5e-22 Identity = 64/152 (42.11%), Postives = 80/152 (52.63%), Query Frame = 0
BLAST of CsGy4G018840 vs. Swiss-Prot
Match: sp|Q9FVS2|ORTH3_ARATH (E3 ubiquitin-protein ligase ORTHRUS 3 OS=Arabidopsis thaliana OX=3702 GN=ORTH3 PE=3 SV=2) HSP 1 Score: 104.4 bits (259), Expect = 1.3e-21 Identity = 63/164 (38.41%), Postives = 82/164 (50.00%), Query Frame = 0
BLAST of CsGy4G018840 vs. Swiss-Prot
Match: sp|Q680I0|ORTH5_ARATH (E3 ubiquitin-protein ligase ORTHRUS 5 OS=Arabidopsis thaliana OX=3702 GN=ORTH5 PE=2 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21 Identity = 63/152 (41.45%), Postives = 79/152 (51.97%), Query Frame = 0
BLAST of CsGy4G018840 vs. TrEMBL
Match: tr|A0A0A0L3V5|A0A0A0L3V5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507950 PE=4 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 1.2e-85 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
BLAST of CsGy4G018840 vs. TrEMBL
Match: tr|A0A1S3B4H1|A0A1S3B4H1_CUCME (E3 ubiquitin-protein ligase ORTHRUS 2-like OS=Cucumis melo OX=3656 GN=LOC103486058 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 3.5e-80 Identity = 145/154 (94.16%), Postives = 148/154 (96.10%), Query Frame = 0
BLAST of CsGy4G018840 vs. TrEMBL
Match: tr|A0A0A0KMK1|A0A0A0KMK1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G273940 PE=4 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 1.6e-56 Identity = 106/154 (68.83%), Postives = 123/154 (79.87%), Query Frame = 0
BLAST of CsGy4G018840 vs. TrEMBL
Match: tr|A0A1S3CCG2|A0A1S3CCG2_CUCME (E3 ubiquitin-protein ligase ORTHRUS 2-like OS=Cucumis melo OX=3656 GN=LOC103499094 PE=4 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 2.7e-56 Identity = 107/154 (69.48%), Postives = 123/154 (79.87%), Query Frame = 0
BLAST of CsGy4G018840 vs. TrEMBL
Match: tr|A0A200R3U3|A0A200R3U3_9MAGN (Zinc finger protein OS=Macleaya cordata OX=56857 GN=BVC80_1837g175 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 4.4e-43 Identity = 95/169 (56.21%), Postives = 110/169 (65.09%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |