CsGy4G011420.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTGAATTTTTTGTATTGTACTTTATGCCCTAGCTGCCAAGTTATTTTCTTTTTAATTATTTCATAATCTAATAATTTCTTGAATACCTGGGAAATCTATTTTTAGGGGATCTTATCAATGAAAACACACTGATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGTAATTATGGGAAAAATTATAGTTGTAGTAGGATATGGGGATAGTGTTCCTTATTTAAGATTGTGATTTATGATTGTTTAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGGTAATATGTTCTATATTTGAAGGTGAAGATGAACATATGTTTATCAGCGCCCAATTATTACCTGCGATTCGGTATTTTATTGTACAAATATAAAATGCCTAAATTCCATTTCTATATTTACAAATGAACGTCCTTTCAATAATTCACTCCTTTCTTTGCAATTTTAGAAGAATCAGATAAGGAAGTTAAATGATTCAACATCCAAGTAAAAGCATATGAAGATAATTCAAATTTGAACATGTCTGTACAACTTATATGCTCAAAGAAACGAGTAATAAATGTGGGAAAGTTCCAATTCTTTCAGCAGATCCATTTCATAGAACTCTTAGTTCATTGTTTTTCCTTTTTTTTTTTTAATCTTTACCTATTATTTTATTTGGTTTAATGTGGTTGAGTGATACCACTTTTTAATTGACAAAACATTTTCATTTCATATTTCTTTCAAGTGGGAATCTCAACATCAGATTTCTTCTTTCTTCTTTGAAGTGGAAATTTCTTTGGTAGAAATTACTTTAGCCCATTTCACAATTTGAGTATATTCATACTAAAAGAACATCATTCCATGTGACTTTTACTCTTTTCAGTGTTTACTAGATGGTTTGGTTCTCTTTTGATTGTGGACTTTTCCTATTTTATGCAATCCTTATTGTTCCCGTGTTTCAGATAGCATGGACTTTCTTCTCCATATGATACATGTTTTATATACTTCAAAGAATTTCAGGTTCTCTCTCTCTTAGTGTGTGGGTGTGAGTTTACCTTTTTAGGGG GTTGAATTTTTTGTATTGTACTTTATGCCCTAGCTGCCAAGTTATTTTCTTTTTAATTATTTCATAATCTAATAATTTCTTGAATACCTGGGAAATCTATTTTTAGGGGATCTTATCAATGAAAACACACTGATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGATAGCATGGACTTTCTTCTCCATATGATACATGTTTTATATACTTCAAAGAATTTCAGGTTCTCTCTCTCTTAGTGTGTGGGTGTGAGTTTACCTTTTTAGGGG ATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGATAGCATGGACTTTCTTCTCCATATGA MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEIAWTFFSI
BLAST of CsGy4G011420.1 vs. NCBI nr
Match: KGN54007.1 (hypothetical protein Csa_4G260440 [Cucumis sativus]) HSP 1 Score: 92.0 bits (227), Expect = 5.9e-16 Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
BLAST of CsGy4G011420.1 vs. NCBI nr
Match: XP_004145520.1 (PREDICTED: uncharacterized protein LOC101217523 isoform X2 [Cucumis sativus]) HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CsGy4G011420.1 vs. NCBI nr
Match: XP_008452892.1 (PREDICTED: neurochondrin isoform X1 [Cucumis melo] >XP_008452893.1 PREDICTED: neurochondrin isoform X1 [Cucumis melo] >XP_016901342.1 PREDICTED: neurochondrin isoform X2 [Cucumis melo]) HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CsGy4G011420.1 vs. NCBI nr
Match: XP_008452894.1 (PREDICTED: neurochondrin isoform X3 [Cucumis melo]) HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CsGy4G011420.1 vs. NCBI nr
Match: XP_008452895.1 (PREDICTED: neurochondrin isoform X4 [Cucumis melo]) HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CsGy4G011420.1 vs. TAIR10
Match: AT4G32050.1 (neurochondrin family protein) HSP 1 Score: 48.9 bits (115), Expect = 1.0e-06 Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 0
BLAST of CsGy4G011420.1 vs. TrEMBL
Match: tr|A0A0A0L0A7|A0A0A0L0A7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G260440 PE=4 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 3.9e-16 Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
BLAST of CsGy4G011420.1 vs. TrEMBL
Match: tr|A0A1S3BW48|A0A1S3BW48_CUCME (neurochondrin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 3.9e-08 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CsGy4G011420.1 vs. TrEMBL
Match: tr|A0A1S3BUW9|A0A1S3BUW9_CUCME (neurochondrin isoform X4 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 3.9e-08 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CsGy4G011420.1 vs. TrEMBL
Match: tr|A0A1S3BUZ3|A0A1S3BUZ3_CUCME (neurochondrin isoform X3 OS=Cucumis melo OX=3656 GN=LOC103493779 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 3.9e-08 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of CsGy4G011420.1 vs. TrEMBL
Match: tr|A0A0A0L170|A0A0A0L170_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652750 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 3.9e-08 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
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