CsGy3G039480 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTGAAATAAACAAGCTCAATGAGAGTGATAAGCAAAAATTAGATGAGTGTCACCAACAATGAGAATTACACCATTGGCCATATTTGATTTTGTGATGCAATGTTTTAATTAATAACGCAAAGTTGGGCTCAAAAGATTAAAGATAATTGACCTAAGTTGAGAAAAGTTAAGAAAGTGTCCCCCTCGTCGTCCCTCCTTAATTCTCAGTGTTGGGCCTTTTCTTCATTTCCTTCTTCAAGGAAAGAAGGGCAGAAAGAAAAGAAAGAAATAGGGACGAAACCGCGGCAATCTCCCAATTTCCTCTCCCCCGCTTCGTTGTTTGAAACCCTACATTCTTCCTTTCCTCTCCAATCATGAAGCTTGTTAGGTATCTTCTTCTCTTTTTCTATTTTTGCCCTCTTTTTCTTCTCGATCTACATCCAAATGCCGTTTTTCATTTCTGAAATCTTCGTTTTCATACAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCTATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACCATCACAGGTCTTTCTGCTTCTCTTTCTTTAAATCTTGTTAAACCCTAGATTTACCAACTTTGCGGCTCAGGGTTCTTTAACTTCCAACTTCTGTTCTATTTTCTTCTTTGAACTTCACTGCGTTGGAATTTGTACAACATTTCAGTATGTTCACCAGTGTACGACTCTCACTACTATTGCTTTCGTCTCACTTCCATCTCCCGACCTTTGAAAGCTAACGGAAGGGTTCTTTATCCCGCTCCCATTTTTAATTTTAAAAATTAGTATTCAACTTATGAGTTGCTTACGGCAAATTAAATTCCTTGTCTTCTGGACGTTGGGAGGATGAGATGTTTTTCTCTCTATTGTTTTTATTTTTATTATTTTCATTTTCAAAATAATTTGAACTTTTGATTACTCTCTACTGATGCTGAATATGCATTCTATTTCATGATATATTTGTAGATTTAAACAAATGTTTAAAATGTCCCGTCATTTTTTCATGGAATGACTCCTACAATTCATTCTTTCCCATTTGATTTGATGGAATTGTTTTTTCAACCAAGTGAATATACTTTTTTTTTTTTTTTTTGAAACGGAAACAAACCAAGTGAATATACTTCTACAATTAACTTGAGGTGAGAAACCTGCACTAGAATGATGTTACTATAGTCTGATTAAGCATGAACTTCTGCTGAACCCCAGCATTTTTGGACTCGGTAGCCCATATGCCATTCTTTGGTTAATTGTATGTGTGTTTTTAAATTTGTTTTGCATAAGAGACTATGCAATAACTGAAAGAGAAGCAACTTGTAACTGAACTGTGCCCAGTGGTGGAAACATAGTCAATTGAGCAGTCGCAAATTATATGCGCCTTTGTCCTCCTACACTGCCTCTAACTACATGAACTATTTTTAACCTTCCCTGGAATAGCAATAACTTAGTTTTGATTAATCTTCTTCTGAGTTCCATTAGTTTTGGGTTCTGTAGACCATTAGCCATTCTTACATGAATTTTTACCCTTTTTTATCTTCTGATGAGAGACTATGTTACAAGTGAAGCAAAAAGTCTAACCTAGGTTTAATCTTGGGGGGAGAAAACCCTAGGAGCTATAAAAAAAAGAGCCTTCTGATAAAAGTTAAATCATATTCATTAGTAGACTGTAACTACAACAGATTATCTTCTATTTGAAAAACCATCGTAAAAATGTGTATGGTACACTATTAAAAATAGAATCTAAGATAGATACTTTTTCTCTCAAAATATTTATAGAAGTAGTAGTGCAGATTTTATTTTACATCCAACTCATCAGGCTGTGAATGTTTTGAAAAATAATTGTAACCCAAGCTAGTTAGGCAAAAGATAAACCAGTTTGTTGAAAATGAAAGACCATCCTCTATAGACAAAAGGATAGTGGAGATAAAGGTAATTTTGGGATTACCCATTGGAATAATAGAGGAACAAACCAGGGGAGACAACCCAGTTTGGGAATTTTTTTCTAGATTCTCTTGGGGGGTTGAGGTTTCTATTAGTAGCCAACCTCACAAACATGTTAACCTTCCTAGGGGTGTCAAACATCCAAACTGATTTGACTTTACAAAGGCGTTTTCAGCTTTAGCAAGGTCTGAGAGAGTTTAGTGAAGGTGATCTTAGAGGACAAACAATTTAATGAATCAATGGATTCTACTTCTATGTCTTGGTCAGCTTCTAATTGAAAGGTATCGAACTTTCCTATAAAGTCAATCCAACTTTCCAATTTCCCTGTGAAAAGAGCCAACAAGCATTCCACAGTTATCCCCCAAGACTACCTATGGTTTTGGTTTCATTGTCGTTGTTTCTGGTTCTAGATGATCACTTTTCACAACTGTTTAAGAAGTAGCACATCATTTCTCTACTTACAAAAAGAGCTGACCAATGGAAGGGAAGTCCGACTCTATTTTAATGGGTGACTTACTGATTTGGTGAATTATGACTAGTTTGCATTTTGCTGTTGACAACCCCCTATACATCTTCCACTTAATGTATTTTTCTACGCTGCTGGTACTGAAACTAGTTATTTACCGGCAGAGTTTTTTTTCACAAGGAGTTGTAACAGAAGAGTTGAGACTCTTGTCATAACTTATGACTCATAATTTTAGTTGGTTACCTCTTTTGTTGGAGGATTTCAGTTGAGATTATACGCAATGTTTTAAAAGGCTAAAGGCAGCCTCTTCCAGCATAGCCCCAAGGTGAGGTGTTATGAGTTGTAAGTCTCTTTGGTTAAAAATATTTTACCAAATATTGTTAGGCAACACTTAATAATCATGTAAAAGTTAATAAAAAGAAAAAAGGAAAATCACTCGTCCCAATTTCCACCTAGACAGAAGTTCTAAAATGATATCTTTAACTTTACTAATATTATTTGATTGACTTCTCCTAGAAATATTAGATTGCGACAAACTAATATTATTCAATAAAATTATTACAAAGAGGTGTAAGTCTCTATCTATGCAATATGCTTGATGACCTACATTGCACTTTGCGTTGTGAAATCTTGTTTTCGACTATGATATGTTAATCAATGATTTGTTTTAAAAAAATTCAATGACATTTCATGAACTTAAAGTAGAAGTACGCACTCTTTTCTCTTAAAACCTAAGTATTGGTCAAGGTTAGAAGTCGCTGATGGGTTGATTTTGAGTGTTTTTCTTGTATTACTTAGGTGTGGATATCAGCATGAATACGCATTTGAAGGCTGTGAAGCTAACTCTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGTTTGTGTTCTTGCATTCTGGCCTGTACTTTATGGTCATTTTCTGCTGCAAGTCCAATTGTTTATACTGAATCATATCATTTGCTACTCATTATCAAATGTATTGCTTATGCATTTCTACACTATGCTCCAACTACAGGGAGGCCTTTGGGGCGGGGACGAGGGCGCGGCCGTGGACGTGGTCGTGGACGTGGACGCTAGATTTGATGCAGTTGTTTCAATTTTTGAGACCTGTAGTGTAAACACTTGCATTGTAGGGAAAGATTATGAATTTTGGGACACGAAAAAGTGGTATTGCAATTCACTGTTCAATCTCGTATGTAGTTTATTACAATGCTATTCGGTTGCTTTTCATATGATAGATGTAGCCTTGCTATGTTTTCTGGTGCTTGGGATCTGTTAATGATTTACTCTAATATTGTCACAATGATAAAACGAGTATGTCTCTAGATTGGAATCTCGGTTTTTACTTTCAACCCCAATAGATTTTGTAGTCATGCAGTACTTGA ATTTGAAATAAACAAGCTCAATGAGAGTGATAAGCAAAAATTAGATGAGTGTCACCAACAATGAGAATTACACCATTGGCCATATTTGATTTTGTGATGCAATGTTTTAATTAATAACGCAAAGTTGGGCTCAAAAGATTAAAGATAATTGACCTAAGTTGAGAAAAGTTAAGAAAGTGTCCCCCTCGTCGTCCCTCCTTAATTCTCAGTGTTGGGCCTTTTCTTCATTTCCTTCTTCAAGGAAAGAAGGGCAGAAAGAAAAGAAAGAAATAGGGACGAAACCGCGGCAATCTCCCAATTTCCTCTCCCCCGCTTCGTTGTTTGAAACCCTACATTCTTCCTTTCCTCTCCAATCATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCTATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACCATCACAGGTGTGGATATCAGCATGAATACGCATTTGAAGGCTGTGAAGCTAACTCTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGGAGGCCTTTGGGGCGGGGACGAGGGCGCGGCCGTGGACGTGGTCGTGGACGTGGACGCTAGATTTGATGCAGTTGTTTCAATTTTTGAGACCTGTAGTGTAAACACTTGCATTGTAGGGAAAGATTATGAATTTTGGGACACGAAAAAGTGGTATTGCAATTCACTGTTCAATCTCTCATGCAGTACTTGA ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCTATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACCATCACAGGTGTGGATATCAGCATGAATACGCATTTGAAGGCTGTGAAGCTAACTCTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGGAGGCCTTTGGGGCGGGGACGAGGGCGCGGCCGTGGACGTGGTCGTGGACGTGGACGCTAGATTTGATGCAGTTGTTTCAATTTTTGAGACCTGTAGTGTAAACACTTGCATTGTAGGGAAAGATTATGAATTTTGGGACACGAAAAAGTGGTATTGCAATTCACTGTTCAATCTCTCATGCAGTACTTGA MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRGGLWGGDEGAAVDVVVDVDARFDAVVSIFETCSVNTCIVGKDYEFWDTKKWYCNSLFNLSCST
BLAST of CsGy3G039480 vs. NCBI nr
Match: KXG26522.1 (hypothetical protein SORBI_3006G115000 [Sorghum bicolor]) HSP 1 Score: 177.9 bits (450), Expect = 2.5e-41 Identity = 89/101 (88.12%), Postives = 92/101 (91.09%), Query Frame = 0
BLAST of CsGy3G039480 vs. NCBI nr
Match: XP_004150106.1 (PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis sativus] >XP_008454659.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis melo] >XP_022155676.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157762.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157763.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >KGN59890.1 hypothetical protein Csa_3G851900 [Cucumis sativus]) HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of CsGy3G039480 vs. NCBI nr
Match: XP_022963993.1 (small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of CsGy3G039480 vs. NCBI nr
Match: XP_022931093.1 (small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small nuclear ribonucleoprotein SmD1b [Cucurbita maxima] >XP_023533992.1 small nuclear ribonucleoprotein SmD1b [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of CsGy3G039480 vs. NCBI nr
Match: XP_022967529.1 (small nuclear ribonucleoprotein SmD1a [Cucurbita maxima]) HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of CsGy3G039480 vs. TAIR10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 164.1 bits (414), Expect = 6.7e-41 Identity = 79/86 (91.86%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of CsGy3G039480 vs. TAIR10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 160.6 bits (405), Expect = 7.4e-40 Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 0
BLAST of CsGy3G039480 vs. TAIR10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 44.7 bits (104), Expect = 5.9e-05 Identity = 19/71 (26.76%), Postives = 41/71 (57.75%), Query Frame = 0
BLAST of CsGy3G039480 vs. TAIR10
Match: AT1G76300.1 (snRNP core protein SMD3) HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04 Identity = 19/71 (26.76%), Postives = 41/71 (57.75%), Query Frame = 0
BLAST of CsGy3G039480 vs. Swiss-Prot
Match: sp|Q9SY09|SMD1B_ARATH (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 4.9e-41 Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of CsGy3G039480 vs. Swiss-Prot
Match: sp|Q9SSF1|SMD1A_ARATH (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 1.2e-39 Identity = 79/86 (91.86%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of CsGy3G039480 vs. Swiss-Prot
Match: sp|O42661|SMD1_SCHPO (Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=smd1 PE=1 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 2.7e-31 Identity = 64/86 (74.42%), Postives = 78/86 (90.70%), Query Frame = 0
BLAST of CsGy3G039480 vs. Swiss-Prot
Match: sp|Q9VU02|SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster OX=7227 GN=SmD1 PE=1 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 3.5e-31 Identity = 63/95 (66.32%), Postives = 83/95 (87.37%), Query Frame = 0
BLAST of CsGy3G039480 vs. Swiss-Prot
Match: sp|Q3ZC10|SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 3.9e-30 Identity = 64/82 (78.05%), Postives = 76/82 (92.68%), Query Frame = 0
BLAST of CsGy3G039480 vs. TrEMBL
Match: tr|A0A0D9ZLZ3|A0A0D9ZLZ3_9ORYZ (Uncharacterized protein OS=Oryza glumipatula OX=40148 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 4.3e-42 Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0
BLAST of CsGy3G039480 vs. TrEMBL
Match: tr|A0A0E0PAC9|A0A0E0PAC9_ORYRU (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 4.3e-42 Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0
BLAST of CsGy3G039480 vs. TrEMBL
Match: tr|A0A0E0H1Z2|A0A0E0H1Z2_ORYNI (Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 4.3e-42 Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0
BLAST of CsGy3G039480 vs. TrEMBL
Match: tr|A0A0E0H1Z1|A0A0E0H1Z1_ORYNI (Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 4.3e-42 Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0
BLAST of CsGy3G039480 vs. TrEMBL
Match: tr|A0A1B6PLH0|A0A1B6PLH0_SORBI (Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3006G115000 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 1.6e-41 Identity = 89/101 (88.12%), Postives = 92/101 (91.09%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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