CsGy2G016650 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G016650
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr2 : 24847923 .. 24848454 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCAGCCGCCGTCTCTATCTCCGTTCGCGAGGCAAATCGCACGCCTCAGTCACGAACAGCCTCGCCGACGCAGGTCAGGCAGCATCGCACGAGTTCGGCTACGTTGCCGGGCTACTCCCGTCCGCGCGTAACTGCTGTTGAACGTCCGAACCATTCTGTCTTCGTCGATACCCGCTGTCCATTTACGAATTGTGGATCGATTCGCGTGCAGATTTGTTTGCACGATTTCTTTTGTGTAGATCCTGCTGCGGCAACTTCTATTTTAACGTCGATTGTCAAAGTCTTGTTATAAGTTATTGGTAAGGATGAGATTGTTGGGTAATAAGGTTTTACATTTGTAAATACATTAAGATGTGATGTTTGTTTAATTGGTTGAATTGATGTTTGTTCTTGAAGGCGACATCGGTGATTTGGAGTTAGTGTCCTTGAGTTATGCCTTAAGCCTTGTTGGAATTCGATTCTTTACTCTTTGAGGTTTGTTTGTTGGAATTAGCTCGACCAAGAAATTTTACATAAAATCGAGGTAAGGG

mRNA sequence

AACCCAGCCGCCGTCTCTATCTCCGTTCGCGAGGCAAATCGCACGCCTCAGTCACGAACAGCCTCGCCGACGCAGGTCAGGCAGCATCGCACGAGTTCGGCTACGTTGCCGGGCTACTCCCGTCCGCGCGTAACTGCTGTTGAACGTCCGAACCATTCTGTCTTCGTCGATACCCGCTGTCCATTTACGAATTGTGGATCGATTCGCGTGCAGATTTGTTTGCACGATTTCTTTTGTGTAGATCCTGCTGCGGCAACTTCTATTTTAACGTCGATTGTCAAAGTCTTGTTATAAGTTATTGGCGACATCGGTGATTTGGAGTTAGTGTCCTTGAGTTATGCCTTAAGCCTTGTTGGAATTCGATTCTTTACTCTTTGAGGTTTGTTTGTTGGAATTAGCTCGACCAAGAAATTTTACATAAAATCGAGGTAAGGG

Coding sequence (CDS)

AACCCAGCCGCCGTCTCTATCTCCGTTCGCGAGGCAAATCGCACGCCTCAGTCACGAACAGCCTCGCCGACGCAGGTCAGGCAGCATCGCACGAGTTCGGCTACGTTGCCGGGCTACTCCCGTCCGCGCGTAACTGCTGTTGAACGTCCGAACCATTCTGTCTTCGTCGATACCCGCTGTCCATTTACGAATTGTGGATCGATTCGCGTGCAGATTTGTTTGCACGATTTCTTTTGTGTAGATCCTGCTGCGGCAACTTCTATTTTAACGTCGATTGTCAAAGTCTTGTTATAA

Protein sequence

NPAAVSISVREANRTPQSRTASPTQVRQHRTSSATLPGYSRPRVTAVERPNHSVFVDTRCPFTNCGSIRVQICLHDFFCVDPAAATSILTSIVKVLL

Homology

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BLAST of CsGy2G016650 vs. NCBI nr
Match: XP_011652802.1 (PREDICTED: uncharacterized protein LOC105435103 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-18
Identity = 63/96 (65.62%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 3   AAVSISVREANRTPQSRTASPTQVRQHRTSSATLPGYSRPRVTAVERPNHSVFVDTRCPF 62
           +AVSISVREA+RTPQSRTASPTQV  HRT+SATLPGYSRPRV AVERPN S FVDT    
Sbjct: 83  SAVSISVREASRTPQSRTASPTQVTPHRTNSATLPGYSRPRVIAVERPNRSAFVDTH--- 142

Query: 63  TNCGSIRVQICL-HDFFCVDPAAATSILTSIVKVLL 98
              G +RVQ C      C   +     LTSIVKVLL
Sbjct: 143 -RRGPVRVQKCFARCLLC--RSCGNFYLTSIVKVLL 172

The following BLAST results are available for this feature:

BLAST of CsGy2G016650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652802.1	4.3e-18	65.63	PREDICTED: uncharacterized protein LOC105435103 [Cucumis sativus]	[more]

BLAST of CsGy2G016650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G016650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G016650 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G016650.1	CsGy2G016650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G016650	Cucurbita maxima (Rimu)	cgybcmaB184
CsGy2G016650	Cucurbita moschata (Rifu)	cgybcmoB176
CsGy2G016650	Cucurbita pepo (Zucchini)	cgybcpeB277
CsGy2G016650	Bottle gourd (USVL1VR-Ls)	cgyblsiB131
CsGy2G016650	Melon (DHL92) v3.5.1	cgybmeB100
CsGy2G016650	Melon (DHL92) v3.6.1	cgybmedB099
CsGy2G016650	Wax gourd	cgybwgoB156