CsGy2G009640.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G009640.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	nuclear pore complex protein NUP160 isoform X2
Location	Chr2 : 9116373 .. 9117672 (-)
Sequence length	690

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCGTAGGATGCCGTTGGCCGGAATGGAAACCTCTATCATGGCTACCGACTCTGTAGAATTCATTGGCGTTTCTGTTCCTTCTTCCTCATCAAGAGAGGCTGCCATTACTTCCGTTGCTTCTCAAGCTACCACCTCATTGACTGAGGACCATACCTCCTGCGTTGTCGTAGGAGATCCTCCAACCTATCTTATCTGGTATGCTACTTTTTCCCTCACACTTTATTGATTCCGTTCTTCGGTGCAAACAAGCCCAATTCCTCTTCCATTCTTCTTCCGCAACAGGAGGATTCGGAAGATTCTACCTCATGTAGTAGAGTTGCTTGAGTTTTCAACTTCCAACGAGTTTTGTAGGACTGGTTTGCGAATTGCCTTTCCTGAAACACTTCACCCGGCCGTTTTTGTTTGCAAAAATGAGGTTAGTTTCCATTTTCCTAGTCTCAACTTTCAGCCTGTTTGAATCTTTCAATGGATTATTAATTGCCGAGGAATGCTGCAGATTAGTTCGTCTATGGGACATCCTTTCTTGATGTATGCAGTGACTTCGTCCGGTTTCGCTTATTGTTTGAAGCTGCGAAATCTATCCTCATATGTATCCTACTCTGCCATTCCGCTCGATGAGGTTGTGGAGTTTAATCTGCAAACCCATCCGGACAACAAACCAGTAACCAGCGTATCTGCTATATCTGGATGTCTTGTGATAGGGAGAAATGATGGATCAGTTTCATGTTACAAACTTGGGTCGCTTGACCAACATTCCCCTGGTATGTTTACTTTTCTGTGCATCAAGTGGCTACATTCTGTATTGTTATTTGTCCAAATATGATTGTGAAAGTGGGCGAATGAAGCTTCTTTACCTGTTGTAATTTGTCCAAATATGATTGAGAATATGGGCAAATGGCTTACTTTTCATACCATTAGGAAGCTCTTTATGATCCAGAACCGGGACTTGTCTTAAAAGTTAAAACCGTAGGAAGTTCTTTGACAATTGCGAATTACCTTCTTGTTTTACTATTTCAAAATCGTTATTATTGTTCATTACTACTTAGGCTGTGCCACAGGGATGTAAATGCAAACTTACAGCTACCTCCAATTCGTTTTACTTCTTTACTTTTTGTGCCACGCTTATTTAGAATCCTTAAAACCTGTATTATTTTGTTACATTTAAGCTGTATATCTAACAATGGCTGTTTATTTACCTTCTAGGCTTTGAACATGAACTACGAGATGATTCAGGATTCAATCGTCTGTTGGGTTTCATTTCAAGGTTCCCATTTATGAAATATCACATGATATAG

mRNA sequence

ATGGGGCGTAGGATGCCGTTGGCCGGAATGGAAACCTCTATCATGGCTACCGACTCTGTAGAATTCATTGGCGTTTCTGTTCCTTCTTCCTCATCAAGAGAGGCTGCCATTACTTCCGTTGCTTCTCAAGCTACCACCTCATTGACTGAGGACCATACCTCCTGCGTTGTCGTAGGAGATCCTCCAACCTATCTTATCTGGAGGATTCGGAAGATTCTACCTCATGTAGTAGAGTTGCTTGAGTTTTCAACTTCCAACGAGTTTTGTAGGACTGGTTTGCGAATTGCCTTTCCTGAAACACTTCACCCGGCCGTTTTTGTTTGCAAAAATGAGATTAGTTCGTCTATGGGACATCCTTTCTTGATGTATGCAGTGACTTCGTCCGGTTTCGCTTATTGTTTGAAGCTGCGAAATCTATCCTCATATGTATCCTACTCTGCCATTCCGCTCGATGAGGTTGTGGAGTTTAATCTGCAAACCCATCCGGACAACAAACCAGTAACCAGCGTATCTGCTATATCTGGATGTCTTGTGATAGGGAGAAATGATGGATCAGTTTCATGTTACAAACTTGGGTCGCTTGACCAACATTCCCCTGGCTTTGAACATGAACTACGAGATGATTCAGGATTCAATCGTCTGTTGGGTTTCATTTCAAGGTTCCCATTTATGAAATATCACATGATATAG

Coding sequence (CDS)

ATGGGGCGTAGGATGCCGTTGGCCGGAATGGAAACCTCTATCATGGCTACCGACTCTGTAGAATTCATTGGCGTTTCTGTTCCTTCTTCCTCATCAAGAGAGGCTGCCATTACTTCCGTTGCTTCTCAAGCTACCACCTCATTGACTGAGGACCATACCTCCTGCGTTGTCGTAGGAGATCCTCCAACCTATCTTATCTGGAGGATTCGGAAGATTCTACCTCATGTAGTAGAGTTGCTTGAGTTTTCAACTTCCAACGAGTTTTGTAGGACTGGTTTGCGAATTGCCTTTCCTGAAACACTTCACCCGGCCGTTTTTGTTTGCAAAAATGAGATTAGTTCGTCTATGGGACATCCTTTCTTGATGTATGCAGTGACTTCGTCCGGTTTCGCTTATTGTTTGAAGCTGCGAAATCTATCCTCATATGTATCCTACTCTGCCATTCCGCTCGATGAGGTTGTGGAGTTTAATCTGCAAACCCATCCGGACAACAAACCAGTAACCAGCGTATCTGCTATATCTGGATGTCTTGTGATAGGGAGAAATGATGGATCAGTTTCATGTTACAAACTTGGGTCGCTTGACCAACATTCCCCTGGCTTTGAACATGAACTACGAGATGATTCAGGATTCAATCGTCTGTTGGGTTTCATTTCAAGGTTCCCATTTATGAAATATCACATGATATAG

Protein sequence

MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPFLMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIGRNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISRFPFMKYHMI

Homology

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BLAST of CsGy2G009640.1 vs. NCBI nr
Match: KGN61507.1 (hypothetical protein Csa_2G150000 [Cucumis sativus])

HSP 1 Score: 439.1 bits (1128), Expect = 9.1e-120
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
           MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120
           PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF
Sbjct: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180
           LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 221
           RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 220

[Close]

BLAST of CsGy2G009640.1 vs. NCBI nr
Match: XP_011649106.1 (PREDICTED: nuclear pore complex protein NUP160 isoform X1 [Cucumis sativus])

HSP 1 Score: 439.1 bits (1128), Expect = 9.1e-120
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
           MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120
           PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF
Sbjct: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180
           LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 221
           RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 220

[Close]

BLAST of CsGy2G009640.1 vs. NCBI nr
Match: XP_011649107.1 (PREDICTED: nuclear pore complex protein NUP160 isoform X2 [Cucumis sativus])

HSP 1 Score: 439.1 bits (1128), Expect = 9.1e-120
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
           MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120
           PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF
Sbjct: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180
           LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 221
           RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 220

[Close]

BLAST of CsGy2G009640.1 vs. NCBI nr
Match: XP_011649108.1 (PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Cucumis sativus])

HSP 1 Score: 439.1 bits (1128), Expect = 9.1e-120
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
           MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120
           PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF
Sbjct: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180
           LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 221
           RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 220

[Close]

BLAST of CsGy2G009640.1 vs. NCBI nr
Match: XP_011649109.1 (PREDICTED: nuclear pore complex protein NUP160 isoform X4 [Cucumis sativus])

HSP 1 Score: 439.1 bits (1128), Expect = 9.1e-120
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
           MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120
           PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF
Sbjct: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180
           LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 221
           RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 220

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BLAST of CsGy2G009640.1 vs. TAIR10
Match: AT1G33410.1 (SUPPRESSOR OF AUXIN RESISTANCE1)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-35
Identity = 86/217 (39.63%), Postives = 126/217 (58.06%), Query Frame = 0


Query: 3   RRMPLAGMETSIMATDS-VEFIGVSVPSSSSREAAITSVASQ----ATTSLTEDHTSCVV 62
           RR P AGME  +    + V++I +SVPS S   ++I + +S+        L+ED+ S  V
Sbjct: 5   RRNPSAGMEVPVAGGGNVVKWIEISVPSPSVSSSSIGANSSEDNECVQLPLSEDYASSSV 64

Query: 63  VGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMG 122
           +G+P    +WRI K  P+ +ELL+ S  + F  TGLR  F +TL P  FV  +E   S  
Sbjct: 65  IGEPSISFVWRINKTSPNALELLQLSAKSGFPITGLRFVFAQTLSPFAFVYADEGGDSGR 124

Query: 123 HPFLMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCL 182
             + +Y++T SG  Y LKL N  +Y S S  PLD ++  +++ + +   VTSV+A  G +
Sbjct: 125 LVYFLYSLTPSGVVYVLKLSNTLAYKSGSVFPLDHLIHLDVRPYLNESRVTSVAASPGFI 184

Query: 183 VIGRNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRL 215
            +GR+DG VSC++     Q S GF  ELRDD+GF RL
Sbjct: 185 FLGRSDGCVSCFQPIVYFQKSSGFHQELRDDTGFGRL 221

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BLAST of CsGy2G009640.1 vs. Swiss-Prot
Match: sp|Q9C811|NU160_ARATH (Nuclear pore complex protein NUP160 OS=Arabidopsis thaliana OX=3702 GN=NUP160 PE=1 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-34
Identity = 86/217 (39.63%), Postives = 126/217 (58.06%), Query Frame = 0


Query: 3   RRMPLAGMETSIMATDS-VEFIGVSVPSSSSREAAITSVASQ----ATTSLTEDHTSCVV 62
           RR P AGME  +    + V++I +SVPS S   ++I + +S+        L+ED+ S  V
Sbjct: 5   RRNPSAGMEVPVAGGGNVVKWIEISVPSPSVSSSSIGANSSEDNECVQLPLSEDYASSSV 64

Query: 63  VGDPPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMG 122
           +G+P    +WRI K  P+ +ELL+ S  + F  TGLR  F +TL P  FV  +E   S  
Sbjct: 65  IGEPSISFVWRINKTSPNALELLQLSAKSGFPITGLRFVFAQTLSPFAFVYADEGGDSGR 124

Query: 123 HPFLMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCL 182
             + +Y++T SG  Y LKL N  +Y S S  PLD ++  +++ + +   VTSV+A  G +
Sbjct: 125 LVYFLYSLTPSGVVYVLKLSNTLAYKSGSVFPLDHLIHLDVRPYLNESRVTSVAASPGFI 184

Query: 183 VIGRNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRL 215
            +GR+DG VSC++     Q S GF  ELRDD+GF RL
Sbjct: 185 FLGRSDGCVSCFQPIVYFQKSSGFHQELRDDTGFGRL 221

[Close]

BLAST of CsGy2G009640.1 vs. TrEMBL
Match: tr|A0A0A0LLC2|A0A0A0LLC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G150000 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 6.0e-120
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
           MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD
Sbjct: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60

Query: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120
           PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF
Sbjct: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180
           LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 221
           RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 220

[Close]

BLAST of CsGy2G009640.1 vs. TrEMBL
Match: tr|A0A1S3C516|A0A1S3C516_CUCME (nuclear pore complex protein NUP160 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103496931 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.6e-115
Identity = 211/220 (95.91%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
           MGRRMPLAGMETS+MA DSVEFIGVSVPSSSSR+A+ITSVASQATTSLTEDH SCVVVGD
Sbjct: 1   MGRRMPLAGMETSVMANDSVEFIGVSVPSSSSRDASITSVASQATTSLTEDHASCVVVGD 60

Query: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120
           PPTYLIW IRKILPHVVELLEFSTSNEF R GLRIAFPETLHPAVFVCKNEISSSMGHPF
Sbjct: 61  PPTYLIWSIRKILPHVVELLEFSTSNEFRRIGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180
           LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 221
           RNDGSVSCYKLGSLDQH+PGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 220

[Close]

BLAST of CsGy2G009640.1 vs. TrEMBL
Match: tr|A0A1S3C4Y2|A0A1S3C4Y2_CUCME (nuclear pore complex protein NUP160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496931 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.6e-115
Identity = 211/220 (95.91%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
           MGRRMPLAGMETS+MA DSVEFIGVSVPSSSSR+A+ITSVASQATTSLTEDH SCVVVGD
Sbjct: 1   MGRRMPLAGMETSVMANDSVEFIGVSVPSSSSRDASITSVASQATTSLTEDHASCVVVGD 60

Query: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120
           PPTYLIW IRKILPHVVELLEFSTSNEF R GLRIAFPETLHPAVFVCKNEISSSMGHPF
Sbjct: 61  PPTYLIWSIRKILPHVVELLEFSTSNEFRRIGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180
           LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 221
           RNDGSVSCYKLGSLDQH+PGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 220

[Close]

BLAST of CsGy2G009640.1 vs. TrEMBL
Match: tr|A0A1S3C5M5|A0A1S3C5M5_CUCME (nuclear pore complex protein NUP160 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496931 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.6e-115
Identity = 211/220 (95.91%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
           MGRRMPLAGMETS+MA DSVEFIGVSVPSSSSR+A+ITSVASQATTSLTEDH SCVVVGD
Sbjct: 1   MGRRMPLAGMETSVMANDSVEFIGVSVPSSSSRDASITSVASQATTSLTEDHASCVVVGD 60

Query: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120
           PPTYLIW IRKILPHVVELLEFSTSNEF R GLRIAFPETLHPAVFVCKNEISSSMGHPF
Sbjct: 61  PPTYLIWSIRKILPHVVELLEFSTSNEFRRIGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180
           LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 221
           RNDGSVSCYKLGSLDQH+PGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 220

[Close]

BLAST of CsGy2G009640.1 vs. TrEMBL
Match: tr|A0A1S3C685|A0A1S3C685_CUCME (nuclear pore complex protein NUP160 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103496931 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.6e-115
Identity = 211/220 (95.91%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 1   MGRRMPLAGMETSIMATDSVEFIGVSVPSSSSREAAITSVASQATTSLTEDHTSCVVVGD 60
           MGRRMPLAGMETS+MA DSVEFIGVSVPSSSSR+A+ITSVASQATTSLTEDH SCVVVGD
Sbjct: 1   MGRRMPLAGMETSVMANDSVEFIGVSVPSSSSRDASITSVASQATTSLTEDHASCVVVGD 60

Query: 61  PPTYLIWRIRKILPHVVELLEFSTSNEFCRTGLRIAFPETLHPAVFVCKNEISSSMGHPF 120
           PPTYLIW IRKILPHVVELLEFSTSNEF R GLRIAFPETLHPAVFVCKNEISSSMGHPF
Sbjct: 61  PPTYLIWSIRKILPHVVELLEFSTSNEFRRIGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180
           LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 181 RNDGSVSCYKLGSLDQHSPGFEHELRDDSGFNRLLGFISR 221
           RNDGSVSCYKLGSLDQH+PGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 220

The following BLAST results are available for this feature:

BLAST of CsGy2G009640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61507.1	9.1e-120	100.00	hypothetical protein Csa_2G150000 [Cucumis sativus]	[more]
XP_011649106.1	9.1e-120	100.00	PREDICTED: nuclear pore complex protein NUP160 isoform X1 [Cucumis sativus]	[more]
XP_011649107.1	9.1e-120	100.00	PREDICTED: nuclear pore complex protein NUP160 isoform X2 [Cucumis sativus]	[more]
XP_011649108.1	9.1e-120	100.00	PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Cucumis sativus]	[more]
XP_011649109.1	9.1e-120	100.00	PREDICTED: nuclear pore complex protein NUP160 isoform X4 [Cucumis sativus]	[more]

BLAST of CsGy2G009640.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33410.1	1.0e-35	39.63	SUPPRESSOR OF AUXIN RESISTANCE1	[more]

BLAST of CsGy2G009640.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C811\|NU160_ARATH	1.8e-34	39.63	Nuclear pore complex protein NUP160 OS=Arabidopsis thaliana OX=3702 GN=NUP160 PE...	[more]

BLAST of CsGy2G009640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLC2\|A0A0A0LLC2_CUCSA	6.0e-120	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G150000 PE=4 SV=1	[more]
tr\|A0A1S3C516\|A0A1S3C516_CUCME	7.6e-115	95.91	nuclear pore complex protein NUP160 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A1S3C4Y2\|A0A1S3C4Y2_CUCME	7.6e-115	95.91	nuclear pore complex protein NUP160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A1S3C5M5\|A0A1S3C5M5_CUCME	7.6e-115	95.91	nuclear pore complex protein NUP160 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A1S3C685\|A0A1S3C685_CUCME	7.6e-115	95.91	nuclear pore complex protein NUP160 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021717	Nucleoporin_Nup160

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G009640	CsGy2G009640	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G009640.1	CsGy2G009640.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G009640.1.CDS.4	CsGy2G009640.1.CDS.4	CDS
CsGy2G009640.1.CDS.3	CsGy2G009640.1.CDS.3	CDS
CsGy2G009640.1.CDS.2	CsGy2G009640.1.CDS.2	CDS
CsGy2G009640.1.CDS.1	CsGy2G009640.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G009640.1.exon.4	CsGy2G009640.1.exon.4	exon
CsGy2G009640.1.exon.3	CsGy2G009640.1.exon.3	exon
CsGy2G009640.1.exon.2	CsGy2G009640.1.exon.2	exon
CsGy2G009640.1.exon.1	CsGy2G009640.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021717	Nucleoporin Nup120/160	PANTHER	PTHR21286	NUCLEAR PORE COMPLEX PROTEIN NUP160	coord: 25..219