CsGy1G030140.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G030140.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DNA (cytosine-5)-methyltransferase
Location	Chr1 : 28319979 .. 28320636 (+)
Sequence length	210

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCATGGGGCCAATGTACTTCAATAAATGGAAAAAGGATGAGGAGAACCAAGTGTAGTTCGGATGGGTGGCTGGAGAGGTAGCTTTCAGTATCAGCATCAGTAAAGAGGCACCCAACGATCTAAAGAAGTCAGACTCCAAAAATGTGCAAGCAGCATAACCGAAGCAGAAGAGAAATAGGTTGTAAACCAGTAAACAGGCTGTTGGTGTTACGAAAATGCCAAAGAATGCTGGTGACTGCTCATAAATTAAGGTCAAAATTATTCCATTACCAGAGAAATCTTATGTTACTAAATGCAAAAAGGAGGTGGCAGTGGAAGATGAGATAGTGTGGTTTGCTTGACAGGTTTGGGGAAGGATGATTCTCAGCCAAATAGGAGACTAACTGAATTTACATTTCAAGATGAGGATGGAAAGCAGCAGGCTGCTGAAATGTTAGAAGTAAACATTTTTTTTATTTCAGGTATTATCTTGCCTTTTGAATACACCCGCCCCTGATAAAGAGAAGAATAAGGGAGTTAGGTGTGAAGGATTTGGGAGAATTGAGTCTTGGACAATATCTGGTTATGAAGATGGCTCACCAACTATATGGATCTCCACCAATGTTGCCAATTATGATCGTGCTAGGCCTGCGGGTGGATACAAAAAGCTATAA

mRNA sequence

ATGAATCATGGGGCCAATGTATTATCTTGCCTTTTGAATACACCCGCCCCTGATAAAGAGAAGAATAAGGGAGTTAGGTGTGAAGGATTTGGGAGAATTGAGTCTTGGACAATATCTGGTTATGAAGATGGCTCACCAACTATATGGATCTCCACCAATGTTGCCAATTATGATCGTGCTAGGCCTGCGGGTGGATACAAAAAGCTATAA

Coding sequence (CDS)

ATGAATCATGGGGCCAATGTATTATCTTGCCTTTTGAATACACCCGCCCCTGATAAAGAGAAGAATAAGGGAGTTAGGTGTGAAGGATTTGGGAGAATTGAGTCTTGGACAATATCTGGTTATGAAGATGGCTCACCAACTATATGGATCTCCACCAATGTTGCCAATTATGATCGTGCTAGGCCTGCGGGTGGATACAAAAAGCTATAA

Protein sequence

MNHGANVLSCLLNTPAPDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL

Homology

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BLAST of CsGy1G030140.1 vs. NCBI nr
Match: XP_008464733.1 (PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Cucumis melo] >XP_008464734.1 PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Cucumis melo] >XP_008464735.1 PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 17  PDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           PDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWIST+VA+YD  RPAGGYKKL
Sbjct: 139 PDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTDVADYDCVRPAGGYKKL 191

[Close]

BLAST of CsGy1G030140.1 vs. NCBI nr
Match: XP_022159176.1 (DNA (cytosine-5)-methyltransferase 1B-like [Momordica charantia] >XP_022159177.1 DNA (cytosine-5)-methyltransferase 1B-like [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 17  PDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           PDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWIST+VA+YD  +PAGGYKKL
Sbjct: 140 PDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTDVADYDCVKPAGGYKKL 192

[Close]

BLAST of CsGy1G030140.1 vs. NCBI nr
Match: XP_011654447.1 (PREDICTED: DNA (cytosine-5)-methyltransferase 1B isoform X2 [Cucumis sativus] >KGN49566.1 hypothetical protein Csa_5G002610 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 5.5e-20
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWIST+VA+YD  RPA GYKKL
Sbjct: 140 DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTDVADYDCVRPAAGYKKL 191

[Close]

BLAST of CsGy1G030140.1 vs. NCBI nr
Match: XP_011654446.1 (PREDICTED: DNA (cytosine-5)-methyltransferase 1B isoform X1 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 5.5e-20
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWIST+VA+YD  RPA GYKKL
Sbjct: 192 DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTDVADYDCVRPAAGYKKL 243

[Close]

BLAST of CsGy1G030140.1 vs. NCBI nr
Match: XP_022929981.1 (DNA (cytosine-5)-methyltransferase 1B-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 17  PDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           PDKEKNKGVRCEGFGRIESWTISGYEDG PTIWIST++A+YD  +PAG Y+KL
Sbjct: 141 PDKEKNKGVRCEGFGRIESWTISGYEDGLPTIWISTDIADYDCVKPAGSYRKL 193

[Close]

BLAST of CsGy1G030140.1 vs. TAIR10
Match: AT5G49160.1 (methyltransferase 1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-17
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           DKEK KGVRC  FGR+E W+ISGYEDGSP IWIST +A+YD  +PA  Y+K+
Sbjct: 123 DKEKEKGVRCTSFGRVEHWSISGYEDGSPVIWISTELADYDCRKPAASYRKV 174

[Close]

BLAST of CsGy1G030140.1 vs. TAIR10
Match: AT4G13610.1 (DNA (cytosine-5-)-methyltransferase family protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-15
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           D+++ KGVR + FGR+E+WTISGYEDGSP IWIST +A+YD  +P+  YKKL
Sbjct: 59  DEKEEKGVRFQSFGRVENWTISGYEDGSPVIWISTVIADYDCRKPSKKYKKL 110

[Close]

BLAST of CsGy1G030140.1 vs. TAIR10
Match: AT4G08990.1 (DNA (cytosine-5-)-methyltransferase family protein)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-15
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           DK + KGVR + FGR+E+W ISGYEDGSP IWIST +A+YD  +PA  YKK+
Sbjct: 116 DKNEEKGVRFQSFGRVENWNISGYEDGSPGIWISTALADYDCRKPASKYKKI 167

[Close]

BLAST of CsGy1G030140.1 vs. TAIR10
Match: AT4G14140.2 (DNA methyltransferase 2)

HSP 1 Score: 77.0 bits (188), Expect = 5.0e-15
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           +K++ KGVR + FGR+E+W ISGYEDGSP IWIST +A+YD  +P+  YKKL
Sbjct: 118 EKKEEKGVRFQSFGRVENWNISGYEDGSPVIWISTALADYDCRKPSKKYKKL 169

[Close]

BLAST of CsGy1G030140.1 vs. Swiss-Prot
Match: sp|P34881|DNMT1_ARATH (DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=DMT1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.5e-16
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           DKEK KGVRC  FGR+E W+ISGYEDGSP IWIST +A+YD  +PA  Y+K+
Sbjct: 123 DKEKEKGVRCTSFGRVEHWSISGYEDGSPVIWISTELADYDCRKPAASYRKV 174

[Close]

BLAST of CsGy1G030140.1 vs. Swiss-Prot
Match: sp|B1Q3J6|DNM1B_ORYSJ (DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica OX=39947 GN=MET1B PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-14
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYK 68
           +K++ KGVRCEGFGRIE W ISGY++G+  +W+ST VA+Y+  +PAG YK
Sbjct: 150 EKDRQKGVRCEGFGRIEDWAISGYDEGTAVVWVSTEVADYECVKPAGNYK 199

[Close]

BLAST of CsGy1G030140.1 vs. Swiss-Prot
Match: sp|Q9T0I1|DNMT3_ARATH (DNA (cytosine-5)-methyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=MET3 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-14
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           D+++ KGVR + FGR+E+WTISGYEDGSP IWIST +A+YD  +P+  YKKL
Sbjct: 59  DEKEEKGVRFQSFGRVENWTISGYEDGSPVIWISTVIADYDCRKPSKKYKKL 110

[Close]

BLAST of CsGy1G030140.1 vs. Swiss-Prot
Match: sp|Q9M0S8|DNMT2_ARATH (DNA (cytosine-5)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=MET2 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           DK + KGVR + FGR+E+W ISGYEDGSP IWIST +A+YD  +PA  YKK+
Sbjct: 116 DKNEEKGVRFQSFGRVENWNISGYEDGSPGIWISTALADYDCRKPASKYKKI 167

[Close]

BLAST of CsGy1G030140.1 vs. Swiss-Prot
Match: sp|O23273|DNMT4_ARATH (DNA (cytosine-5)-methyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=MET4 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.0e-14
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           +K++ KGVR + FGR+E+W ISGYEDGSP IWIST +A+YD  +P+  YKKL
Sbjct: 118 EKKEEKGVRFQSFGRVENWNISGYEDGSPVIWISTALADYDCRKPSKKYKKL 169

[Close]

BLAST of CsGy1G030140.1 vs. TrEMBL
Match: tr|A0A1S3CM89|A0A1S3CM89_CUCME (DNA (cytosine-5)-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103502549 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.7e-22
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 17  PDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           PDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWIST+VA+YD  RPAGGYKKL
Sbjct: 139 PDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTDVADYDCVRPAGGYKKL 191

[Close]

BLAST of CsGy1G030140.1 vs. TrEMBL
Match: tr|A0A0A0KPF1|A0A0A0KPF1_CUCSA (DNA (cytosine-5)-methyltransferase OS=Cucumis sativus OX=3659 GN=Csa_5G002610 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-20
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWIST+VA+YD  RPA GYKKL
Sbjct: 140 DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTDVADYDCVRPAAGYKKL 191

[Close]

BLAST of CsGy1G030140.1 vs. TrEMBL
Match: tr|A0A2R6Q6M8|A0A2R6Q6M8_ACTCH (DNA (cytosine-5)-methyltransferase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc21305 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-16
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKKL 70
           DK K KGVRCEGFGRIESW ISGYEDGSP IW+ST++A+YD  +PAG YK L
Sbjct: 159 DKTKGKGVRCEGFGRIESWAISGYEDGSPVIWVSTDIADYDCLKPAGSYKNL 210

[Close]

BLAST of CsGy1G030140.1 vs. TrEMBL
Match: tr|A0A2G9HXN6|A0A2G9HXN6_9LAMI (DNA (cytosine-5)-methyltransferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05054 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-16
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKK 69
           +KEK KGVRCEGFGRIE WTISGYEDGSP IWIST +A+YD  +P+GGYKK
Sbjct: 144 NKEKPKGVRCEGFGRIEEWTISGYEDGSPVIWISTVLADYDCIKPSGGYKK 194

[Close]

BLAST of CsGy1G030140.1 vs. TrEMBL
Match: tr|V4RXI4|V4RXI4_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10027585mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-16
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 18  DKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTNVANYDRARPAGGYKK 69
           D+EK KGVRCEGFGRIESW+ISGYEDGSP IW+ST++A+YD  +PA  YKK
Sbjct: 88  DREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKK 138

The following BLAST results are available for this feature:

BLAST of CsGy1G030140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464733.1	1.3e-21	92.45	PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Cucumis melo] >XP_0084647...	[more]
XP_022159176.1	2.9e-21	90.57	DNA (cytosine-5)-methyltransferase 1B-like [Momordica charantia] >XP_022159177.1...	[more]
XP_011654447.1	5.5e-20	90.38	PREDICTED: DNA (cytosine-5)-methyltransferase 1B isoform X2 [Cucumis sativus] >K...	[more]
XP_011654446.1	5.5e-20	90.38	PREDICTED: DNA (cytosine-5)-methyltransferase 1B isoform X1 [Cucumis sativus]	[more]
XP_022929981.1	2.1e-19	83.02	DNA (cytosine-5)-methyltransferase 1B-like isoform X1 [Cucurbita moschata]	[more]

BLAST of CsGy1G030140.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49160.1	1.4e-17	67.31	methyltransferase 1	[more]
AT4G13610.1	1.0e-15	63.46	DNA (cytosine-5-)-methyltransferase family protein	[more]
AT4G08990.1	1.7e-15	63.46	DNA (cytosine-5-)-methyltransferase family protein	[more]
AT4G14140.2	5.0e-15	61.54	DNA methyltransferase 2	[more]

BLAST of CsGy1G030140.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P34881\|DNMT1_ARATH	2.5e-16	67.31	DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=DMT1 PE=...	[more]
sp\|B1Q3J6\|DNM1B_ORYSJ	1.4e-14	60.00	DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q9T0I1\|DNMT3_ARATH	1.8e-14	63.46	DNA (cytosine-5)-methyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=MET3 PE=...	[more]
sp\|Q9M0S8\|DNMT2_ARATH	3.1e-14	63.46	DNA (cytosine-5)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=MET2 PE=...	[more]
sp\|O23273\|DNMT4_ARATH	9.0e-14	61.54	DNA (cytosine-5)-methyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=MET4 PE=...	[more]

BLAST of CsGy1G030140.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CM89\|A0A1S3CM89_CUCME	8.7e-22	92.45	DNA (cytosine-5)-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103502549 PE=3 ...	[more]
tr\|A0A0A0KPF1\|A0A0A0KPF1_CUCSA	3.7e-20	90.38	DNA (cytosine-5)-methyltransferase OS=Cucumis sativus OX=3659 GN=Csa_5G002610 PE...	[more]
tr\|A0A2R6Q6M8\|A0A2R6Q6M8_ACTCH	2.4e-16	75.00	DNA (cytosine-5)-methyltransferase OS=Actinidia chinensis var. chinensis OX=1590...	[more]
tr\|A0A2G9HXN6\|A0A2G9HXN6_9LAMI	3.2e-16	78.43	DNA (cytosine-5)-methyltransferase OS=Handroanthus impetiginosus OX=429701 GN=CD...	[more]
tr\|V4RXI4\|V4RXI4_9ROSI	4.2e-16	74.51	Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10027...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR022702	Cytosine_MeTrfase1_RFD

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090116	C-5 methylation of cytosine
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003886	DNA (cytosine-5-)-methyltransferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G030140	CsGy1G030140	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G030140.1.CDS.1	CsGy1G030140.1.CDS.1	CDS
CsGy1G030140.1.CDS.2	CsGy1G030140.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G030140.1	CsGy1G030140.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022702	DNA (cytosine-5)-methyltransferase 1, replication foci domain	PFAM	PF12047	DNMT1-RFD	coord: 18..69 e-value: 1.4E-11 score: 44.5