CsGy1G023460 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G023460
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 22284599 .. 22285299 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTCAACAAAATAATTAGCCTTTCCATAGTTTCTTCATCTCTCACTACCTAAATTTATATATATATTGATTTCTTTATTTTTTAATCTCCATTACCAATCATTCAAACCAAACAAAAAACAACTAACATGGATTATTCTAAAGCTCATCTCGCCCTCTTCCTTTTGGTCTCGTTTGTCCTTGTTACCTCGGCTCGAATCATACCCCATTCAGGTACGCAAAATTTGTTAAATTATAAATCTATTGTTGAATAGTCTAGATTTGCATAATTGTATAGAAAACTAAAATGTAATATCATATCAGAAAATCAAGAAGCTGCATATATGATAATTGACTATCCTGAGCCAAGACATCATCCACCACCTCCATCACCACCTTCGTTCGAGGTTAACGTTGTCAAGGACCGCCACATCAAGAAAAATCCCTAAAGAAATTTTGGTTGTTAGAGGAGGAAGAAAGTATCAGTAAGGAAGGAAGCTTAAAATGAGAAATGATGATGTGCATGAACCAATAATAGCACTATATAAATGTTATATTATCGAATTATATAATTCCCTTTATGTGTGTTGAGAATGAACAAAATATATATATATAGTTTGTTCTAATACATGTCTCTCTATTATATCTAATGAATAAATAGATTTATGATAAGACATTTACCCTACTTTTTTTCTTCTATTCTTTTAAATGAAGAAAAGAC

mRNA sequence

GTTTTCAACAAAATAATTAGCCTTTCCATAGTTTCTTCATCTCTCACTACCTAAATTTATATATATATTGATTTCTTTATTTTTTAATCTCCATTACCAATCATTCAAACCAAACAAAAAACAACTAACATGGATTATTCTAAAGCTCATCTCGCCCTCTTCCTTTTGGTCTCGTTTGTCCTTGTTACCTCGGCTCGAATCATACCCCATTCAGAAAATCAAGAAGCTGCATATATGATAATTGACTATCCTGAGCCAAGACATCATCCACCACCTCCATCACCACCTTCGTTCGAGGTTAACGTTGTCAAGGACCGCCACATCAAGAAAAATCCCTAAAGAAATTTTGGTTGTTAGAGGAGGAAGAAAGTATCAGTAAGGAAGGAAGCTTAAAATGAGAAATGATGATGTGCATGAACCAATAATAGCACTATATAAATGTTATATTATCGAATTATATAATTCCCTTTATGTGTGTTGAGAATGAACAAAATATATATATATAGTTTGTTCTAATACATGTCTCTCTATTATATCTAATGAATAAATAGATTTATGATAAGACATTTACCCTACTTTTTTTCTTCTATTCTTTTAAATGAAGAAAAGAC

Coding sequence (CDS)

ATGGATTATTCTAAAGCTCATCTCGCCCTCTTCCTTTTGGTCTCGTTTGTCCTTGTTACCTCGGCTCGAATCATACCCCATTCAGAAAATCAAGAAGCTGCATATATGATAATTGACTATCCTGAGCCAAGACATCATCCACCACCTCCATCACCACCTTCGTTCGAGGTTAACGTTGTCAAGGACCGCCACATCAAGAAAAATCCCTAA

Protein sequence

MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVVKDRHIKKNP

Homology

[Close]

BLAST of CsGy1G023460 vs. NCBI nr
Match: KGN65817.1 (hypothetical protein Csa_1G532250 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXPSFEVNVV 60
          MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXPSFEVNVV
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXPSFEVNVV 60

Query: 61 KDRHIKKNP 70
          KDRHIKKNP
Sbjct: 61 KDRHIKKNP 69

[Close]

BLAST of CsGy1G023460 vs. NCBI nr
Match: KGN65815.1 (hypothetical protein Csa_1G532230 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 5.9e-14
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXPS-----F 60
          MDYSKA L+L LL+SFVLVTSARIIPHSENQE AYMI DYP+P         P      F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVNVVKDRHIKKNP 70
          E++VVKD  I KNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]

BLAST of CsGy1G023460 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_1G532240 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXP-----SF 60
          MDYSKA LALFLL+SF L TSARIIPHSENQEA Y++ DY +P         P     SF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNVVKDRHIKKNP 70
          EVN V+ RHI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]

BLAST of CsGy1G023460 vs. NCBI nr
Match: XP_011658636.1 (PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1G532260 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1  MDYSKAH--LALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHXXXXXXXPS 60
          MDYSKA   LALFLL+SF LV SARIIPHSENQEAAY+I DYP+    PRH        S
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60

Query: 61 FEVNVVKDRHIKKNP 70
           EV+VVK R IK  P
Sbjct: 61 SEVSVVKSRLIKNKP 75

[Close]

BLAST of CsGy1G023460 vs. TrEMBL
Match: tr|A0A0A0LY98|A0A0A0LY98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.9e-26
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXPSFEVNVV 60
          MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXPSFEVNVV
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXPSFEVNVV 60

Query: 61 KDRHIKKNP 70
          KDRHIKKNP
Sbjct: 61 KDRHIKKNP 69

[Close]

BLAST of CsGy1G023460 vs. TrEMBL
Match: tr|A0A0A0LV67|A0A0A0LV67_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.9e-14
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXPS-----F 60
          MDYSKA L+L LL+SFVLVTSARIIPHSENQE AYMI DYP+P         P      F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVNVVKDRHIKKNP 70
          E++VVKD  I KNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]

BLAST of CsGy1G023460 vs. TrEMBL
Match: tr|A0A0A0M0T8|A0A0A0M0T8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXP-----SF 60
          MDYSKA LALFLL+SF L TSARIIPHSENQEA Y++ DY +P         P     SF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNVVKDRHIKKNP 70
          EVN V+ RHI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]

BLAST of CsGy1G023460 vs. TrEMBL
Match: tr|A0A0A0LVJ6|A0A0A0LVJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.6e-13
Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1  MDYSKAH--LALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHXXXXXXXPS 60
          MDYSKA   LALFLL+SF LV SARIIPHSENQEAAY+I DYP+    PRH        S
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60

Query: 61 FEVNVVKDRHIKKNP 70
           EV+VVK R IK  P
Sbjct: 61 SEVSVVKSRLIKNKP 75

The following BLAST results are available for this feature:

BLAST of CsGy1G023460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65817.1	1.5e-25	100.00	hypothetical protein Csa_1G532250 [Cucumis sativus]	[more]
KGN65815.1	5.9e-14	63.51	hypothetical protein Csa_1G532230 [Cucumis sativus]	[more]
KGN65816.1	7.7e-14	62.16	hypothetical protein Csa_1G532240 [Cucumis sativus]	[more]
XP_011658636.1	1.5e-12	64.00	PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1...	[more]

BLAST of CsGy1G023460 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G023460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G023460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY98\|A0A0A0LY98_CUCSA	9.9e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1	[more]
tr\|A0A0A0LV67\|A0A0A0LV67_CUCSA	3.9e-14	63.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1	[more]
tr\|A0A0A0M0T8\|A0A0A0M0T8_CUCSA	5.1e-14	62.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1	[more]
tr\|A0A0A0LVJ6\|A0A0A0LVJ6_CUCSA	9.6e-13	64.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G023460.1	CsGy1G023460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..69

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G023460	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G023460	Watermelon (97103) v2	cgybwmbB015
CsGy1G023460	Watermelon (97103) v2	cgybwmbB042
CsGy1G023460	Wax gourd	cgybwgoB045
CsGy1G023460	Cucurbita maxima (Rimu)	cgybcmaB075
CsGy1G023460	Cucurbita maxima (Rimu)	cgybcmaB083
CsGy1G023460	Cucurbita maxima (Rimu)	cgybcmaB104
CsGy1G023460	Cucurbita maxima (Rimu)	cgybcmaB133
CsGy1G023460	Cucurbita maxima (Rimu)	cgybcmaB140
CsGy1G023460	Cucurbita moschata (Rifu)	cgybcmoB069
CsGy1G023460	Cucurbita moschata (Rifu)	cgybcmoB077
CsGy1G023460	Cucurbita moschata (Rifu)	cgybcmoB098
CsGy1G023460	Cucurbita moschata (Rifu)	cgybcmoB124
CsGy1G023460	Cucurbita moschata (Rifu)	cgybcmoB125
CsGy1G023460	Cucurbita moschata (Rifu)	cgybcmoB131
CsGy1G023460	Cucurbita pepo (Zucchini)	cgybcpeB065
CsGy1G023460	Cucurbita pepo (Zucchini)	cgybcpeB071
CsGy1G023460	Cucurbita pepo (Zucchini)	cgybcpeB091
CsGy1G023460	Cucurbita pepo (Zucchini)	cgybcpeB149
CsGy1G023460	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G023460	Cucumber (Chinese Long) v2	cgybcuB023
CsGy1G023460	Bottle gourd (USVL1VR-Ls)	cgyblsiB027
CsGy1G023460	Melon (DHL92) v3.5.1	cgybmeB023
CsGy1G023460	Melon (DHL92) v3.5.1	cgybmeB059
CsGy1G023460	Melon (DHL92) v3.6.1	cgybmedB021
CsGy1G023460	Melon (DHL92) v3.6.1	cgybmedB053
CsGy1G023460	Watermelon (Charleston Gray)	cgybwcgB004
CsGy1G023460	Watermelon (Charleston Gray)	cgybwcgB044
CsGy1G023460	Watermelon (Charleston Gray)	cgybwcgB055
CsGy1G023460	Watermelon (97103) v1	cgybwmB005
CsGy1G023460	Watermelon (97103) v1	cgybwmB023
CsGy1G023460	Watermelon (97103) v1	cgybwmB066
CsGy1G023460	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G023460	Wild cucumber (PI 183967)	cgybcpiB022
CsGy1G023460	Silver-seed gourd	carcgybB0166
CsGy1G023460	Silver-seed gourd	carcgybB0390
CsGy1G023460	Silver-seed gourd	carcgybB0525
CsGy1G023460	Silver-seed gourd	carcgybB0655
CsGy1G023460	Silver-seed gourd	carcgybB0983