CsGy1G020700.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G020700.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DNA polymerase epsilon subunit
Location	Chr1 : 19374591 .. 19385794 (+)
Sequence length	2915

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAACAAAACAAGAAATATTTATATGTTTCTATTCTATTTGTTTCAAGAAATAACTTATTTCTAAAAAAATAGGAAGAAAGTTGGAGAAAAAGTGAAGCAAAGTCTCAACCTAGAAGAATGAGCAGAAAGATAGGAGAATAGGTTGAGCCTCAGCGACTGAAACAGGTACGGCAACTTCCCCAACTGCTGAAACCCGGATACAGGAAGGAGAAGAACGGCTACGTGGACTGAGGCAGCTTCTAATGGCGCCGACTGATGGTTTGTGCGTCTTCTTATTGAAGTGTGAAATATGAGCTACTTGCTGACTCCCACTGGGTGGTAGGCTCTGGCCGGGTACCAAGAATTGAGTGAATATAGTGGGTTGGAAATCTTTGATCAAGTCAAGAGACCTTTCTCATTCCCGCAAGGACACAAGTACTTCTCCAACAAGAACTGAGAGCTACAGGAACAAGAACTAGCGGGACAAGAACTTAGTCAACACGAACAGCTACTGCAAGAGCGGCCTCTTGCCCTTGGACCACTCAAAATCAGGGAGCCACAAGGTTCGGATCCGTAGTAGTCTTTTCTTCTTCTTCCTATTCATTTGTTCTTTTTCTTCCTTTAACTGAAAACCTTTAACTGCGTTTTCTTGTTGGACTGATTACAATTGTATCTAGTAGAGCCAAAAAAGAATTTCGTCGTGAATCAACCCTCCATTTTCCAACCCCATCATCATTCCTTCACAATTATTGTGCAGAATTGCAGATTGTCTCACAGAAGAATGGACACATTAACTTTGAGGAAAAAGGTACAGAGGAAAGCTAAAATCAGAGGGTTGTACAGCATCAAACTGGAAGCTCTTGACGAGATTGTTTCCTTTGTCTCTCGTTCCCATGGCTTCGAAGATGAAGCTATAGAATTTGTTCTTGACAATCTCCATGAAGAATCTTGTACTGTTCCTTCTTCTTTCATACTACGATTATATCTTCTTTGCAATTCACCTCATTCCTTTTCATGGACAGTTTCTTTGTTTTGGCTATTGTGGCAGTGAAATCTCCAATATTAGACAAGGATGCGGTGCATCGAGTTATCAGCATTATGGTTGCAGCTGATAAAGTGGGAGAAGAAAGTCCCAATACCATTACCAGTACATCTGCTCTTTGCATCATCAACGCTTTTGATATCCCCAAGTTTCGTTATGATCCCATAAAAAAGATCTTTCTGTATGGTTTTCTCCCATTTATATTTATTTTTAATAGTTGTTAAACTAAGCATACCTGGTTAAGCATATACCTTGGGCCAAGAAGTCAGCAAAATCTCTCATTCCCATGTGTTGTTGAATACTTGAACTAAAAAAAAACTACTAGTTGGGTTTTTGGGATAATTAGACGCGGATAACTAATGCAGCTCATTGCAAAAAAGAGAGATATAATGGATTTAACTGAGAACTATCATCATCAACATTCCTTTTCTCTGCACTTGAAATCACATGTTCTTGAACCATGTACATATATATTTTTAGGCACACAGAAAACCTTCCAATTCATGGAGATGCTTCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTTTTGCTTTCCCAAAGGCTCTCTCGAGATCAGCATTTCTCCAAACCTGCTTTTGACATTGGCATGTCTCATTTTGGAAGTTGTGAGGTACTCCATTTCTCTTGACCTATGAATTGATCATGTTAGCCTTTACAATTGAACATGAGCATTTACACTAATTTTGTTTGTGATGTGTTTCCCAGATTTCTCCTATTCAATCTTTGGTGGGGCAAACAGGGAGAAAATGGGTCATGGGAGTGATCTCTCAAATGGAGGATGGCCACTTCTACTTGGAAGACCTTACCGCATCTGTGGAAATTAATTTATCTAGTGCTATATCCTTTACTGGCAACTTCTATGATGTGGAAAAATCTGAACTTGTTTGATATTTGAAGATGACATGCCCTGCAGTTTTCATTAATAGTTAGCACAAGATAACTACAGGTCTATTTACAGAGAACACCATTATTGTAGCTGAAGGAGAGATGCTCGTGGAGGGTATTTTTCAGGTTTGTAGTACCACGTTTGCCTTCAAGTTCTGTATAAATAGGTGGTTGAAATTTCCCCTTAGTGTCCTATTAGGTATTTCTAAACCCCCTTGTTTATAGAGAGAACTTACTTTCTTAAAGACATATGTAGCGTTCATTATTCTATTTTCTCTACGGATCATCCAGTTTTCCTATTAGCTGTTGCCAGGATGTACTTTGCTTACGAAGTTTTCATATTTGATCAGATTATTATGCTTGGTTACCCTTTTAAAAGGTATTATCTTTGCATATTTCCCTATATTCTTTTCAAAAAAGCTTTGCAGTTTTGGCACTTTTAATGTATAGCAGTATTTTGTTTATACTGTAACTGCTTCCTAAGTTGAACGCTTTTTGAAGTTCTTACATGCTTATGAGATGATTTTTTTTTTACAATGCTATGGGATGGATCTTAGTTCTGTTTGGTCCTGATCAGAGTTTTGTGTAAAGATACTACAGAAATATCTTGATATATTGCTATTCCTCAACGATTACAATATGAAAATACTATATGAAACAGTAAAATGATCGCGAATGATCAATCATCAAAATTACAGCCACTAATTACTGAAGTAAATCAACAGACAGAAATTCCACAAACATTCTTTCCAAACAATAACAATGGAAAATAAGAAAAAACACAAGAACCCGAACCCTCTGCTTTCCTTTCCTGCGCAAGGAGGAATGCAGCCTCTCTTCTTCTCCAGAAAATACTCGATACCTCCTTCCTTTTCTTTACTTTCTTTTATTATGATTTGCTAACTAACTACTGTGCCCCACCAGAGTGGTCCCCATCTTCATTACCACCTCCTACACTCCCACGTGTGGCCTTACTGTTATTCTTATTTCTTCTACTATATTTAAACAATATTGGAGGCCTAGCATTTTGCATGCCTAAGTTATATTTCACGTAGTTCTCAATTGGTAAGTGGATAACACCATCTTGTAGTTGGTTATTTAATATTTCGTTAGGTATCCAGAAGTTGAAATTTACTTTTGAGAGATATGAAACCTTATTTTTGTAAACAATTTTTTTTTTTTTAGCGAGTTCCGCCCACAGTCTTCTCAAAAGGTTTTGAATCTTGATAACATGAGGTTGACATTTAAGCACAACAGATTTAAATATGCAAGTGTCCTGCCTTCATCCAAAGCATATTTACTATTCAAAATTGGATTTGCTTGTGGAATTTCATTCTTGTCCTTTACTTTCTTATTGTTTTCTAGCACAAGGATACTGATGGGATACCAGTTGTTCCCAATCCCAGTAGCTGAAAATCAAATACTACTGATATTACTAAGATGAAAATAACGATAATAACTACAGGACAATATCACCGAATTCGTTTATAGCCGATTCGATGGACACTCTTCCCTCTCCTGCTATCCTTTCTTTCAAGAATATACAGAAAGATAACTTCACCAAAAGAAAAGCTCCCAGTTCTCTCTTTCACTTCCTTATTTATATTCACTCCCCACCTACAGTGGTCCCCCTGTTTCATGTGTCGCTCCACTCATTGTGGTCCCCACATGCGGTTACATAACTAACTCCTCCTCCTGCTTCTCTTTCCTATTCTTTCTCCTACTGTATTGATGTATGATGGGTGGTCTAACATTGCATTCCCGGTCCAGTTTCACCTTGTCCTCAAGGTGGAAATCGGGGAAGGATTGCTGAAAGTCATCATAGTTTTCCCATGTTGCTTCATGATGCGGTAGACCCTTCCAACTCATTAAGACTTCCCATCCTCCTTTCTCGTTTTTCTGATAACCGAAGACCTCCTGAGGCACAGCTCTCCTTTTCCGCAGTGATACCTGCCTGTATGGCCTAATCTTTAGGAACACCTTATCGCCTTCTTCAAATTCGACATGTCTTCTCTTCATATCGGCACAACTCTTCATCTTTTCTTGGGCTATGCGTAAATGTTCCTTCAAAGCACCCAAGGCTACATCTCTTTCCTTAAGTTGCTCATCTAAAGCCGAGTTGGGAGTTTCACGATCTCCATAATATATCAGGGCTGGGGGTGTTCTTCCATAGACAGCTTGGAATGGTGACACGCCTAATGATCTTTGGAATGTAGTGTTATACCAGTATTCAGCCCAAGACAACCATTTCATCCAATCTTTCGGTTTTTGCCCACGGAAGCACCTTAAATAAATTTCTACAGATCTGTTGACCACCTCTGTCTATCCATCTGTCTAGGGTGGTATGCTGTGCTTCGGTTCAACTTCGTACCAGCTAAACGAAACAACTCTTTCAAAAAATGACTCAGAAAGATCTTGTCTCGGTCAGGGACAATTGACTGTGGAAAGCCATGCAGTCTTACAACCTCCCGAACAATTCAGCTACCATCTTAGCGTCAAAAGGATGTTTAAGGCCGAGGAAGTGAGCATATTTATTGAAGCAATCCACCACTACGAATATTACTTCAAACCCCATTGATTTAGGCAGTCCTTCAATAAAATCCATGGATATATCCTCCCATACTCTATTTGGTATCTCTAGGGGGGTCAATAATCCTGCAGGTGACAATGCTAAAGTCTTATTCCGCTGACACGTAATACATTCTTCGCAATATTTTTTAACGTGAGCTTTCATTCCCACCCAAAACAACTCTCCTGTCAGCCTCTTATACGTTCTTAAGAACCCGGAATGACCTCCTAGGGCCGAGTCATGATATGTGTGCATAATAATAGGTATCAATGAAGAATTCTTCGCAATCACTAATCTCCCTTTGTATCTCAGTATTCCTTGTTGCAGAGTGTAATTCTTTACCTTCTCCTCCCTCTGAATCCTGTTGATTATATCTTGCAAGTAGTCATTCTTGTTAACCTCCTCTCTGATTACCTTTATGTCCACCAAGGTGGGGGCTGTTAGTTGGTTAAGATGGACAGTTGGTGGCACTCGTGAAAGGGCATCTGCTGCCTTGTTTTCCAAGCCCGGTTTATACACCACCTCAAATGAATAACCCAACAATTTTGCAATCCACTTCTGATATTGCGGTTGTATGACTCTCTGTTCCAGAAAGAACTTAAGTGATCGCTGATCTGTCTCAACTATGAATGTCCTTCCTAACAAATAGGGTCGCCAACGTTGGACTATCAATACTACTGCCATTAATTCCCTCTCGTATACTGGTTTGGTTCGGTCTCGCAAGGCTAGTGTATGGCTATAAAAAGCAATTGGTCTCTTGTTCTGCATTAGCACTGCCCCTACCCCATAGCCTGACGCATCTGTATCTACTTCGAATGGTGCATTAAAATCTGGAAGAGCTAATATAGGCAAGGCCATCATTGCTCGTTGAAGCTTTTCAAACGCTTCTTGTGCTCCCTCATTCCATTTAAATGATCCCAGCTTCAGTAGTTGAGTTAGAGGTGCCGCTATGGACCCATAGTGCTGTACAAAACGGCGGTAGTAACCAGTCAACCCCAGAAACCCTCTAACTTCCCGAACATTTGTTGGAGTTGGCCGTTGCTTGATTGCTCTAATTTTTTCAGGATTGACTTCTACTCCCTTTCCTGACAATGTGTCCCAAATGCTCCACATTTTAGTACGCAAAGCTGCATTTCTTTCTATTAGCAAACAGTTTATGCCTCCTCAATTCTTCCAGAACTAATTCAATGTGCTGACAATGTTCCTCTAAGTTCCTACTATAGACCAGTATATCATCGAGGAAGACCAAGACGAACTTCCTCAAGTACGATCTAAAAACCGAATTCATTAGTGATTGGAAAGTTTCTGGTGCGTTTGTGAGTCCAAACGGCATCACCAAAAACTCATAATGTCCTTCGTGAGTTCTAAAGGCCGTTTTCTCTATATCTTGACTGCACATTCTAATTGATGATATCCCGCTTTCAAGTCAATTTTGGAGAATAGATTTGCACCATTTAGCTCGTCGAACAGTTCTTCCACAACAGGGATAGGAAACTTATCTGGAATAGTTATGTTATTGAGTGCCCTGTAGTCCACGCAGAATCGCCAACTTCCGTCCTTCTTGACCAATAATACGGGGCTTGAGTAGGGGCTTGTGCTGGGACGGATAATTCCTGAGGTTAGCATTTCGTCCACCAATTTTTCCATTTCCTCCTTCTGCTGAAAAGCATACCGATAAGGCCTGACATTCACCGGATCTGCCCCTCCCCTTACGTGTATATGATGTTCGATATCCCTTCTTGGAGGTAATTCTTTGGGCCAATCGAAAACGTCATTATACTGTTTCAAGGCTGTTAGTATGCTCTCAGGTATGTTATTACTCTCTTCTGGCTCTATCTCGGCTATGTGGGCTTCCAAGGTTCTGCACTCAATCAAGTATCCCATGTCTGACTCAGTCCACGATTTAGTTAAATTCTTCAAGCTCACTTGAGTTTTGGTTAGGCTTGGATCCCCTTTTATCACTATTTTTCTGTTGTCATGGAAAAATGACATGGTTAAGTTCTTTCAGTCCATCTCAGTCACTCCCAATGAGTGTAACCATTGCATCCCAAGTATCACGTCTACCCCTCCCAGTTCCAGTGGTAGGAAGTTTTCAAGGACTGTCCACCCATTGAGATCCAACTTTACTTTTTCACACACTCCCTTGCCTTTGATGGCTGTTCCTAACCCAAGTATTACCCCATAGTTAGAAGTATCCTTTGTGGGTAATTTCAGTGTCATCACTAGTCGGTCGGATATGAAATTGTGGGTGGCTCCGCAATCCACTAGCACGACAACCTCCTTACTTTGAATTGTTCCCCTTATCTTCATGGTACTCGGATTCGTCAATCCCACTACCGAGTTAATATATAACTCCACTACTTCCCCAAGGTCATTCTGCAACTCAATAGTTTTCAATTCCTTCAAGTCATACTCGTCTTCCTCAATAATTTCTTCCTCCACGTCGTCCGCTCTTACCACGAACATACATAACTCACGTATTTCCTTCACCCTGCATTTGTGCCTGGAGTAATACTTCTCATCACATTTGAAACAGAGTCCTTTCTCCCTCTTGGCCTGGAATTCTGCGTCGAAAAGCCGTTTGGATGGTCCTTCTTTCTTAATCTCCTTTGCCGGTGATCCCCTCAGTATGATTGTTCGTATCGAAAATACCGTGTTCTCCTTATTCCCCTGTTCTTTTATAATTGAATTTGTTTTGGCCGTATTATAGGGGTAATTTGGAACTTTCGCTCCAGAATAACCGGGTAAATTTGCTTATCTCCTCAGGATCTTCCAATGTTCCACCATTTGCGCGTATCTCATCATCTCCGCTAATCCCACGGGATTGCAGAATTCCATCTCCACCTTAATCCACGGTAACAGCCCTCCCATGAACGTCTCTTCCACAATCTTTTTCGGAATGTCCGATCGGTGCCACCCACTTATCGAATAGATTCCGGTATTCCTCTACACTTGATTCCTGCTGCTGAATACGTAAGAACCGACCATATAGGGAGCCTTCACGGGATGATCGAAACGGATCAATAATCGTTCTTTTAAGTTTAACCAACAGGTAAATTTGTCTCTCTCCTCCTGCGATCGATACCAGTTGAGTGTGGGGCCTTCAAAACTGATTGTAGCGACCGTGAGTTTTCAGAATTCGTCAGTTTGTGTATTTGAAAATACCTATCTGCACGGAATAGCCATGAATCTGGGTCATCTCCATTGAATACCGACATTTCAACTTTGTTGAATTTGTTTCGATCGTTGTTATCCCCATCGCCATCACCCTTCTTCTCCATCGTGTCATTTTTAGTTTCCTTACTTGCCGAACTCTCTCCCTCCGCCGATTTTCCCGTCCATGTTTCTTGTGCCGACGAATCGATTCGTTTACCGCTCGCTAATACTCGTTCCTTGGCCATCGTCTCCATGAATATCATCACCATCTGGTGTGTTTTCTCCACTTGGGCCTGAAGGTTTTCCATGTTTTGTGACATCACCGTAAGCTTCTCTTCCATCACCGGAATTTTGTTGAGTTCTTGTTCGTGTGTGTCCCTTCTCTCTTCACTTCTGGTTTGAACCATGTTTTCCCACTTATTTCGAATCGACGTGCTCTGATACCAAGTTGATGGGATACCAGTTGTTCTCAATCCCAGTAGCCGAAAATCAAATACTACTGATATTACTAAGATGAAAATAATGATAATAACTACAGGACAATATCACCGAATTGGTTTATAGCCGATTCGATGGACACTCTTCCCTCTCCTGCTATCCTTTCTTTCAAGAATATACAGAAAGATAACTTCACCAAAAGAAAAGCTCCCTGTTCTCTCTTTCACTCCCTTATTTATATTCACTCCCCACCTACAGTGGTCCCCCTGTTTCATGTGTCGCTCCACTCATTGTGGTCCCCACATGCGGTTACATAACTAACTCCTCCTCCTGCTTCTCTTTCCTATTCTTTCTCCTACTGTATTGATGTATGATGGGTGGTCTAACAGATACCTTCCTACTCAAACGTTTTGGAAAATGTTCAGAACTTGTTTCATTGAAGTGTTTCAAATACTCTTCATCGTATTAATTATGTGTTTTTCCTGGGTGTCTATTTAGGTTGTTACGTGTGGATTTCCTCCATTAGAGGAAAGGGGCAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGCGATGGTGTGCTACCTAAAGAGGAGACTGTATCCTCTTGTTTTGGTCTATAAAATGAATTTCTAAATAAGCATTGGAAAGGAGGGCTATAGTTGACATTTTATTGTGCTGAATTTTGGTTATTAAAGGGGTGTAAGTGCAATCAAGTTTTCCTTAATCATCAATAGCTCAGGCGTGCAGATCTGGAGAAGAAAGCAGTTAATGATATGTTTGTCATACTCTCTGACATTTGGTTGGATAGTGAAGAGGTGACAAATAGCCTTTTTATGTTTCATGTGTATTGTGTGTCTATAAAGCTTGGTGGCCTTATTAAAACTTTTTCATGTGGTAGGCCATGGGAAAACTGGAGACCATACTTGATGGTTTCGAGAATGTGGAAGTGGTTCCTTCCTTGTTTGTTTTGATGGGGAATTTTTGTTCCCATCCTTGTAATATTGCCTTTAATTCTTTCTCAAGTCTCAGGTATGTATTATCGCAATTGTTTCTGTGTTATTGAGATGAGTTCAGTGCAATAATGAGTTCAAATGTGCAGACTACAGTTTGGTAAGTTAGGAAAAATGATAGCAGCTCATCCACGATTAAATGAGCATAGCAAGTTTCTTTTTATTCCTGGTCCAGATGATGCAGGTTTGTGTTGTTATCTGTTAAGAAACTCCTCACTATGCACTATATTTTCTGAGATTTTATTTACATGGAGTTTATAGGGCCATCAACAGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTAACCGAAGAGCTTCAAATGCATGTTTCAAATGCCATTTTCTCAAGTAACCCTTGCAGGTGAATACTTTGATTGCTGACTTGTAACCTTAATGGTGCTTCTAGTCTTGACTATAATATTATGTTGCATGAGGGGCTTCACTTCTACAGCTTACTTGTGAAATAAATCATTTTTTTTATTTGGAATAATTTAATAGATTTAAAGGCCAGTGTTATTGGTATGGATTTAGTTATCCAGTTTTTTTAACTATTGAATTTAGGGGGGAAAAGGTCATTTATTAACAAGTGAGAACAAAGCTACGATGAGCAAAATAAATGGTCCTCTACAAGGCGTTCTATTTTTTACTTAATTAAGAGGAATTAACCGATTTTAAGATGAGATTATGCTCCCTTTGGTGAATGCGATGCCTTTTACAGTCCTTTGGTGAATGCTATGCCTTTTACAGTCCTTTGGTGAATGCTATGCCTTTTACAGTCCTTTGGTGAATGCTATGCCTTTTACAGTCCTTTGGTGAATGCTATGCCTTTTACAGTTTTACTCCATAGTGGTGGATAATTGTCATACTTGAATGCAGGGTCAGATTCTACACTCAGGAAATTGTATTTTTCCGACAGGACTTGCTTTATAGAATGCGTCGTTCCTGTCTCATACCACCTTCCACAGAAGAAACAAGCGATCCTTTTGAGCATGTGAATTTTTTTTCTTTGCCTTTTACATTTCTGTTTTTTTTTTCTAGTTCTCTGTTTATGGATTCTACACCCTTTCGGATATTTATATATGAAGGCCTTAAGTTTTCATGATTCTCTTGCAGCTTGTTGCCACCATAACTCATCAAAGTCATCTCTGTCCTCTTCCTCTGGTTATTCAACCAATTATCTGGAATTACGACCACTGTCTTCATCTATATCCTACTCCTCATGTGGTACTTACCCATATCTCAATCTAGTGTTTTAATCGATCTATTTATACATCCAAAGTTGGATGTTCTTTCTCTCCACACCTGGAGACAGATAATGAATGAGGGTTCCGATGAATGATAAGTGTTCTACTGCGATTGAACTTTCAGATTATTATATCAATCTTTATTTGGTTTATGCAGATAGTGTTGGGGGATAGAAGTAAGCAACAAGCGTTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTTGTGGCATATCGTCCATGCAATCAAGAAGTTGAACTGTCTGCCCTGTAAATTATTACAAAGTTTAGGCCAGATTCAAGCGGGCACACTCCTTTATGCAGCATAACAATTCGTTTAGAACATGAATGAGAAATCCTATAGCATCATTCTTTATCTTGGGAGTTGCACTATTCTTTATCTTGGGAGTTGCACTGGTGCACACCAAGAATTACCACTAGCTAGAATCTAACTCTATGCCGAAGAAGGCTTTTGTGATTTCTGTTTAGGAAAAAGTCGAAACATTGATGCAGAGTTAGGAATCTTTTTAGTTGTACAATTGTAAATCCGAATAACATATATTTTCTTTTAGATTATGTACTTTCTAACCGTGGACGATGGATTGATCAACAACTAACCTAAAAGTTCTTCACCCACCTGATGGATTTTTTTTTTTTTAGAGAAAAAGATAATTAGTTCATGCCTTATAGTGCATGTTATGTTATAATGTTATTCAAGATCAGATCATGAATACAGGTTAAGCATAATGAGGGATTTTTTATTTTTATTTTTTGGTAAGTGGTTGCCCATACTTTCAGAGAGTTGCTGAAGTGTGTAGAGCAGG

mRNA sequence

AAGAACAAAACAAGAAATATTTATATGTTTCTATTCTATTTGTTTCAAGAAATAACTTATTTCTAAAAAAATAGGAAGAAAGTTGGAGAAAAAGTGAAGCAAAGTCTCAACCTAGAAGAATGAGCAGAAAGATAGGAGAATAGGTTGAGCCTCAGCGACTGAAACAGGTACGGCAACTTCCCCAACTGCTGAAACCCGGATACAGGAAGGAGAAGAACGGCTACGTGGACTGAGGCAGCTTCTAATGGCGCCGACTGATGGTTTGTGCGTCTTCTTATTGAAGTGTGAAATATGAGCTACTTGCTGACTCCCACTGGGTGGTAGGCTCTGGCCGGGTACCAAGAATTGAGTGAATATAGTGGGTTGGAAATCTTTGATCAAGTCAAGAGACCTTTCTCATTCCCGCAAGGACACAAGTACTTCTCCAACAAGAACTGAGAGCTACAGGAACAAGAACTAGCGGGACAAGAACTTAGTCAACACGAACAGCTACTGCAAGAGCGGCCTCTTGCCCTTGGACCACTCAAAATCAGGGAGCCACAAGAATTGCAGATTGTCTCACAGAAGAATGGACACATTAACTTTGAGGAAAAAGGTACAGAGGAAAGCTAAAATCAGAGGGTTGTACAGCATCAAACTGGAAGCTCTTGACGAGATTGTTTCCTTTGTCTCTCGTTCCCATGGCTTCGAAGATGAAGCTATAGAATTTGTTCTTGACAATCTCCATGAAGAATCTTTGAAATCTCCAATATTAGACAAGGATGCGGTGCATCGAGTTATCAGCATTATGGTTGCAGCTGATAAAGTGGGAGAAGAAAGTCCCAATACCATTACCAGTACATCTGCTCTTTGCATCATCAACGCTTTTGATATCCCCAAGCACACAGAAAACCTTCCAATTCATGGAGATGCTTCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTTTTGCTTTCCCAAAGGCTCTCTCGAGATCAGCATTTCTCCAAACCTGCTTTTGACATTGGCATGTCTCATTTTGGAAGTTGTGAGATTTCTCCTATTCAATCTTTGGTGGGGCAAACAGGGAGAAAATGGGTCATGGGAGTGATCTCTCAAATGGAGGATGGCCACTTCTACTTGGAAGACCTTACCGCATCTGTGGAAATTAATTTATCTAGTGCTATATCCTTTACTGGCAACTTCTATGATGTGGAAAAATCTGAACTTGTTTGATATTTGAAGATGACATGCCCTGCAGTTTTCATTAATAGTTAGCACAAGATAACTACAGGTCTATTTACAGAGAACACCATTATTGTAGCTGAAGGAGAGATGCTCGTGGAGGGTATTTTTCAGGTTGTTACGTGTGGATTTCCTCCATTAGAGGAAAGGGGCAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGCGATGGTGTGCTACCTAAAGAGGAGACTCTCAGGCGTGCAGATCTGGAGAAGAAAGCAGTTAATGATATGTTTGTCATACTCTCTGACATTTGGTTGGATAGTGAAGAGGCCATGGGAAAACTGGAGACCATACTTGATGGTTTCGAGAATGTGGAAGTGGTTCCTTCCTTGTTTGTTTTGATGGGGAATTTTTGTTCCCATCCTTGTAATATTGCCTTTAATTCTTTCTCAAGTCTCAGGTATGTATTATCGCAATTGTTTCTGTGTTATTGAGATGAGTTCAGTGCAATAATGAGTTCAAATGTGCAGACTACAGTTTGGTAAGTTAGGAAAAATGATAGCAGCTCATCCACGATTAAATGAGCATAGCAAGTTTCTTTTTATTCCTGGTCCAGATGATGCAGGTTTGTGTTGTTATCTGTTAAGAAACTCCTCACTATGCACTATATTTTCTGAGATTTTATTTACATGGAGTTTATAGGGCCATCAACAGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTAACCGAAGAGCTTCAAATGCATGTTTCAAATGCCATTTTCTCAAGTAACCCTTGCAGGGTCAGATTCTACACTCAGGAAATTGTATTTTTCCGACAGGACTTGCTTTATAGAATGCGTCGTTCCTGTCTCATACCACCTTCCACAGAAGAAACAAGCGATCCTTTTGAGCATCTTGTTGCCACCATAACTCATCAAAGTCATCTCTGTCCTCTTCCTCTGGTTATTCAACCAATTATCTGGAATTACGACCACTGTCTTCATCTATATCCTACTCCTCATGTGATAGTGTTGGGGGATAGAAGTAAGCAACAAGCGTTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTTGTGGCATATCGTCCATGCAATCAAGAAGTTGAACTGTCTGCCCTGTAAATTATTACAAAGTTTAGGCCAGATTCAAGCGGGCACACTCCTTTATGCAGCATAACAATTCGTTTAGAACATGAATGAGAAATCCTATAGCATCATTCTTTATCTTGGGAGTTGCACTATTCTTTATCTTGGGAGTTGCACTGGTGCACACCAAGAATTACCACTAGCTAGAATCTAACTCTATGCCGAAGAAGGCTTTTGTGATTTCTGTTTAGGAAAAAGTCGAAACATTGATGCAGAGTTAGGAATCTTTTTAGTTGTACAATTGTAAATCCGAATAACATATATTTTCTTTTAGATTATGTACTTTCTAACCGTGGACGATGGATTGATCAACAACTAACCTAAAAGTTCTTCACCCACCTGATGGATTTTTTTTTTTTTAGAGAAAAAGATAATTAGTTCATGCCTTATAGTGCATGTTATGTTATAATGTTATTCAAGATCAGATCATGAATACAGGTTAAGCATAATGAGGGATTTTTTATTTTTATTTTTTGGTAAGTGGTTGCCCATACTTTCAGAGAGTTGCTGAAGTGTGTAGAGCAGG

Coding sequence (CDS)

ATGGACACATTAACTTTGAGGAAAAAGGTACAGAGGAAAGCTAAAATCAGAGGGTTGTACAGCATCAAACTGGAAGCTCTTGACGAGATTGTTTCCTTTGTCTCTCGTTCCCATGGCTTCGAAGATGAAGCTATAGAATTTGTTCTTGACAATCTCCATGAAGAATCTTTGAAATCTCCAATATTAGACAAGGATGCGGTGCATCGAGTTATCAGCATTATGGTTGCAGCTGATAAAGTGGGAGAAGAAAGTCCCAATACCATTACCAGTACATCTGCTCTTTGCATCATCAACGCTTTTGATATCCCCAAGCACACAGAAAACCTTCCAATTCATGGAGATGCTTCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTTTTGCTTTCCCAAAGGCTCTCTCGAGATCAGCATTTCTCCAAACCTGCTTTTGACATTGGCATGTCTCATTTTGGAAGTTGTGAGATTTCTCCTATTCAATCTTTGGTGGGGCAAACAGGGAGAAAATGGGTCATGGGAGTGATCTCTCAAATGGAGGATGGCCACTTCTACTTGGAAGACCTTACCGCATCTGTGGAAATTAATTTATCTAGTGCTATATCCTTTACTGGCAACTTCTATGATGTGGAAAAATCTGAACTTGTTTGA

Protein sequence

MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSPILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPKHTENLPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRKWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNFYDVEKSELV

Homology

[Close]

BLAST of CsGy1G020700.1 vs. NCBI nr
Match: KGN65523.1 (hypothetical protein Csa_1G434690 [Cucumis sativus])

HSP 1 Score: 414.8 bits (1065), Expect = 1.7e-112
Identity = 215/226 (95.13%), Postives = 215/226 (95.13%), Query Frame = 0


Query: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60
           MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP
Sbjct: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60

Query: 61  ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK-----------HTENL 120
           ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK           HTENL
Sbjct: 61  ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPKFRYDPIKKIFLHTENL 120

Query: 121 PIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRK 180
           PIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRK
Sbjct: 121 PIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRK 180

Query: 181 WVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNFYDVEKSELV 216
           WVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNFYDVEKSELV
Sbjct: 181 WVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNFYDVEKSELV 226

[Close]

BLAST of CsGy1G020700.1 vs. NCBI nr
Match: XP_011657177.1 (PREDICTED: DNA polymerase epsilon subunit 2 [Cucumis sativus])

HSP 1 Score: 386.0 bits (990), Expect = 8.6e-104
Identity = 202/217 (93.09%), Postives = 202/217 (93.09%), Query Frame = 0


Query: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60
           MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP
Sbjct: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60

Query: 61  ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK-----------HTENL 120
           ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK           HTENL
Sbjct: 61  ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPKFRYDPIKKIFLHTENL 120

Query: 121 PIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRK 180
           PIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRK
Sbjct: 121 PIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRK 180

Query: 181 WVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNF 207
           WVMGVISQMEDGHFYLEDLTASVEINLSSA   TG F
Sbjct: 181 WVMGVISQMEDGHFYLEDLTASVEINLSSAKITTGLF 217

[Close]

BLAST of CsGy1G020700.1 vs. NCBI nr
Match: XP_016899382.1 (PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 2 [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 3.8e-91
Identity = 180/218 (82.57%), Postives = 191/218 (87.61%), Query Frame = 0


Query: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60
           MD LTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSR HGFED+AIE VLD+LHEESLKSP
Sbjct: 1   MDALTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRFHGFEDDAIELVLDDLHEESLKSP 60

Query: 61  ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK------------HTEN 120
           IL+KD VHRVIS ++AA++  E SPNTITST+ALCII+AFDI K            HT +
Sbjct: 61  ILEKDGVHRVISKLLAAEEAEEASPNTITSTTALCIIDAFDISKFRYDPIKKIFHRHTGD 120

Query: 121 LPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGR 180
           LPIHGDA AKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGR
Sbjct: 121 LPIHGDAPAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGR 180

Query: 181 KWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNF 207
           KWVMGVISQMEDGHFYLEDLTASVEINLS+A   TG F
Sbjct: 181 KWVMGVISQMEDGHFYLEDLTASVEINLSNAKITTGLF 218

[Close]

BLAST of CsGy1G020700.1 vs. NCBI nr
Match: XP_023525784.1 (DNA polymerase epsilon subunit B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.2 bits (822), Expect = 2.6e-84
Identity = 170/218 (77.98%), Postives = 186/218 (85.32%), Query Frame = 0


Query: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60
           MD  TLR+KVQRK+KIRG YSIKL+AL EIVSF SR  G ED+AI+ VLD+LH+ESL+S 
Sbjct: 1   MDESTLRRKVQRKSKIRG-YSIKLDALAEIVSFASRFDGCEDDAIDLVLDHLHDESLQSS 60

Query: 61  ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK------------HTEN 120
           I+DKDAVHRV+SI++AAD+ GEE P+T TSTSALCII+AFDI K            HT +
Sbjct: 61  IIDKDAVHRVVSILLAADEAGEECPDTSTSTSALCIIDAFDISKFRYDPIKKIFYMHTGS 120

Query: 121 LPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGR 180
           LPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFD GMSHFGSCEISPIQSLVGQTGR
Sbjct: 121 LPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDTGMSHFGSCEISPIQSLVGQTGR 180

Query: 181 KWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNF 207
           KWVMGVISQMEDGHFYLEDLTASVEINLSSA   TG F
Sbjct: 181 KWVMGVISQMEDGHFYLEDLTASVEINLSSAKITTGLF 217

[Close]

BLAST of CsGy1G020700.1 vs. NCBI nr
Match: XP_022998323.1 (DNA polymerase epsilon subunit B [Cucurbita maxima])

HSP 1 Score: 320.9 bits (821), Expect = 3.4e-84
Identity = 170/218 (77.98%), Postives = 186/218 (85.32%), Query Frame = 0


Query: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60
           MD  TLR+KVQRK+KIRG YSIKL+AL EIVSF SR  G ED+AI+ VLD+LH+ESL+S 
Sbjct: 1   MDESTLRRKVQRKSKIRG-YSIKLDALAEIVSFASRFDGCEDDAIDLVLDHLHDESLQSS 60

Query: 61  ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK------------HTEN 120
           I+DKDAVHRV+SI++AAD+ GEE P+T TSTSALCII+AFDI K            HT +
Sbjct: 61  IIDKDAVHRVVSILLAADEAGEECPDTSTSTSALCIIDAFDISKYRYDPIKKIFYMHTGS 120

Query: 121 LPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGR 180
           LPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFD GMSHFGSCEISPIQSLVGQTGR
Sbjct: 121 LPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDSGMSHFGSCEISPIQSLVGQTGR 180

Query: 181 KWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNF 207
           KWVMGVISQMEDGHFYLEDLTASVEINLSSA   TG F
Sbjct: 181 KWVMGVISQMEDGHFYLEDLTASVEINLSSAKITTGLF 217

[Close]

BLAST of CsGy1G020700.1 vs. TAIR10
Match: AT5G22110.1 (DNA polymerase epsilon subunit B2)

HSP 1 Score: 202.6 bits (514), Expect = 2.4e-52
Identity = 117/213 (54.93%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 7   RKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFED-EAIEFVLDNLHEESLKSPILDKD 66
           RKK+Q+K K RG Y++K +ALDEI+ F  +    +D EAI+ +LDNL +E+ KS  +D +
Sbjct: 8   RKKIQKKFKNRG-YNLKFDALDEILVFADQFPDDDDGEAIDLLLDNL-QETHKSSTVDAE 67

Query: 67  AVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK------------HTENLPIHG 126
           +V  +I+ ++ A    EE     TS S+L II+AF +PK            HT +LPIHG
Sbjct: 68  SVRGLINRLLGAHNAPEE---PTTSASSLAIIDAFLVPKFGYDSVKKKFNEHTSSLPIHG 127

Query: 127 DASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRKWVMG 186
           +ASAK ALYR+RF+LLSQR+SR +HFS+PAFD  MS F + EIS IQSL+ Q GRKWVMG
Sbjct: 128 EASAKTALYRERFMLLSQRVSRAEHFSRPAFDAEMSQFENNEISSIQSLISQRGRKWVMG 187

Query: 187 VISQMEDGHFYLEDLTASVEINLSSAISFTGNF 207
           VISQ+EDGHFYLEDL+ASVEI+LS A   TG F
Sbjct: 188 VISQLEDGHFYLEDLSASVEIDLSKAKITTGFF 215

[Close]

BLAST of CsGy1G020700.1 vs. Swiss-Prot
Match: sp|Q500V9|DPB2_ARATH (DNA polymerase epsilon subunit B OS=Arabidopsis thaliana OX=3702 GN=DPB2 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.4e-51
Identity = 117/213 (54.93%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 7   RKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFED-EAIEFVLDNLHEESLKSPILDKD 66
           RKK+Q+K K RG Y++K +ALDEI+ F  +    +D EAI+ +LDNL +E+ KS  +D +
Sbjct: 8   RKKIQKKFKNRG-YNLKFDALDEILVFADQFPDDDDGEAIDLLLDNL-QETHKSSTVDAE 67

Query: 67  AVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK------------HTENLPIHG 126
           +V  +I+ ++ A    EE     TS S+L II+AF +PK            HT +LPIHG
Sbjct: 68  SVRGLINRLLGAHNAPEE---PTTSASSLAIIDAFLVPKFGYDSVKKKFNEHTSSLPIHG 127

Query: 127 DASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRKWVMG 186
           +ASAK ALYR+RF+LLSQR+SR +HFS+PAFD  MS F + EIS IQSL+ Q GRKWVMG
Sbjct: 128 EASAKTALYRERFMLLSQRVSRAEHFSRPAFDAEMSQFENNEISSIQSLISQRGRKWVMG 187

Query: 187 VISQMEDGHFYLEDLTASVEINLSSAISFTGNF 207
           VISQ+EDGHFYLEDL+ASVEI+LS A   TG F
Sbjct: 188 VISQLEDGHFYLEDLSASVEIDLSKAKITTGFF 215

[Close]

BLAST of CsGy1G020700.1 vs. Swiss-Prot
Match: sp|Q54Y85|DPOE2_DICDI (DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum OX=44689 GN=pole2 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-17
Identity = 64/207 (30.92%), Postives = 114/207 (55.07%), Query Frame = 0


Query: 7   RKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSPILDK-D 66
           +K++ +   + G +SIK +A+  I++ + ++ G++   I  ++DNL +   KS  L   +
Sbjct: 6   KKQITKSFSLTG-FSIKADAMKCIINRI-KNEGYD---ITQLIDNLLKNLDKSQYLQTIE 65

Query: 67  AVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK-----------HTENL--PIH 126
              ++I  + ++D + +E         AL +I+AF+ P             +EN    +H
Sbjct: 66  GCFKLIDTINSSDAIEKE---------ALKVIDAFNTPLFNFDSNSKQFIKSENFDRSLH 125

Query: 127 GDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRKWVM 186
           G +++K+ LYR R+L + QR  R+ +FS P             I+P+ SL+G TGRK V+
Sbjct: 126 GSSNSKSDLYRKRYLKVLQRTERNDYFSTPVLASDKLKNEYQTITPLSSLLGNTGRKHVL 185

Query: 187 GVISQMEDGHFYLEDLTASVEINLSSA 200
           G ISQ+E+  FY+EDL  +V+I++S A
Sbjct: 186 GTISQIEEDQFYIEDLNTNVKIDISKA 198

[Close]

BLAST of CsGy1G020700.1 vs. Swiss-Prot
Match: sp|A7YWS7|DPOE2_BOVIN (DNA polymerase epsilon subunit 2 OS=Bos taurus OX=9913 GN=POLE2 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-13
Identity = 62/220 (28.18%), Postives = 111/220 (50.45%), Query Frame = 0


Query: 6   LRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFE-DEAIEFVLDNLHEESLKSPILDK 65
           LR +     K+RGL  ++ EA+  +   +   +  E ++A+E ++D + ++ L S ++++
Sbjct: 6   LRSRALSAFKLRGL-MLRGEAVKYLTEALQSINEIELEDALEKIIDAVEKQPLSSNMIER 65

Query: 66  DAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPKHTEN------LP-------- 125
             V    ++   +  V E      T      II AFDIP+   N      LP        
Sbjct: 66  SVVE--AAVQECSQSVDE------TIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPA 125

Query: 126 --IHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGS-CEISPIQSLVGQT- 185
             + G A  KA L+R+R+ +L QR  R + F+ P         GS  ++  I++L+G T 
Sbjct: 126 PNLFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTS 185

Query: 186 --GRKWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTG 205
             G   V+G+I+Q+++G F+LED T +++++LS A   +G
Sbjct: 186 KIGDVIVLGMITQLKEGKFFLEDPTGTIQLDLSKAQFHSG 216

[Close]

BLAST of CsGy1G020700.1 vs. Swiss-Prot
Match: sp|O54956|DPOE2_MOUSE (DNA polymerase epsilon subunit 2 OS=Mus musculus OX=10090 GN=Pole2 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-12
Identity = 62/220 (28.18%), Postives = 106/220 (48.18%), Query Frame = 0


Query: 6   LRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFE-DEAIEFVLDNLHEESLKSPILDK 65
           LR +     K+RGL  ++ EA   +   +      E +E +  ++D + ++ L S ++++
Sbjct: 6   LRSRTVSAFKLRGLL-LRSEATKYLTEALQSVTELELEENLGKIIDAVEKQPLSSNMIER 65

Query: 66  DAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPKHTEN------LP-------- 125
             V        A  +  +    TI       II AFDIP+   N      LP        
Sbjct: 66  SVVE------AAVQECSQSMDETI--EHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAA 125

Query: 126 --IHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGS-CEISPIQSLVGQT- 185
             + G A  KA LY +R+ +L QR  R + F+ P     +   GS  ++  I++L+G T 
Sbjct: 126 PTLFGTARDKAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTS 185

Query: 186 --GRKWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTG 205
             G   V+G+I+Q+++G F+LED T +V+++LS A   +G
Sbjct: 186 KVGDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSG 216

[Close]

BLAST of CsGy1G020700.1 vs. Swiss-Prot
Match: sp|P56282|DPOE2_HUMAN (DNA polymerase epsilon subunit 2 OS=Homo sapiens OX=9606 GN=POLE2 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-11
Identity = 59/220 (26.82%), Postives = 108/220 (49.09%), Query Frame = 0


Query: 6   LRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFE-DEAIEFVLDNLHEESLKSPILDK 65
           LR +     K+RGL  ++ EA+  +   +      E ++ +E +++ + ++ L S ++++
Sbjct: 6   LRSRALSAFKLRGLL-LRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSNMIER 65

Query: 66  DAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPKHTEN------LP-------- 125
             V    ++   +  V E      T      II AFDIP+   N      LP        
Sbjct: 66  SVVE--AAVQECSQSVDE------TIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPA 125

Query: 126 --IHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGS-CEISPIQSLVGQT- 185
             + G    KA ++R+R+ +L QR  R + F+ P         GS  ++  I++L+G T 
Sbjct: 126 PNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTT 185

Query: 186 --GRKWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTG 205
             G   V+G+I+Q+++G F+LED T +V+++LS A   +G
Sbjct: 186 KIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSG 216

[Close]

BLAST of CsGy1G020700.1 vs. TrEMBL
Match: tr|A0A0A0LUV9|A0A0A0LUV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434690 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 1.1e-112
Identity = 215/226 (95.13%), Postives = 215/226 (95.13%), Query Frame = 0


Query: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60
           MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP
Sbjct: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60

Query: 61  ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK-----------HTENL 120
           ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK           HTENL
Sbjct: 61  ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPKFRYDPIKKIFLHTENL 120

Query: 121 PIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRK 180
           PIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRK
Sbjct: 121 PIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRK 180

Query: 181 WVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNFYDVEKSELV 216
           WVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNFYDVEKSELV
Sbjct: 181 WVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNFYDVEKSELV 226

[Close]

BLAST of CsGy1G020700.1 vs. TrEMBL
Match: tr|A0A1S4DTQ5|A0A1S4DTQ5_CUCME (DNA polymerase epsilon subunit OS=Cucumis melo OX=3656 GN=LOC103501415 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 2.5e-91
Identity = 180/218 (82.57%), Postives = 191/218 (87.61%), Query Frame = 0


Query: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60
           MD LTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSR HGFED+AIE VLD+LHEESLKSP
Sbjct: 1   MDALTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRFHGFEDDAIELVLDDLHEESLKSP 60

Query: 61  ILDKDAVHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK------------HTEN 120
           IL+KD VHRVIS ++AA++  E SPNTITST+ALCII+AFDI K            HT +
Sbjct: 61  ILEKDGVHRVISKLLAAEEAEEASPNTITSTTALCIIDAFDISKFRYDPIKKIFHRHTGD 120

Query: 121 LPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGR 180
           LPIHGDA AKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGR
Sbjct: 121 LPIHGDAPAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGR 180

Query: 181 KWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNF 207
           KWVMGVISQMEDGHFYLEDLTASVEINLS+A   TG F
Sbjct: 181 KWVMGVISQMEDGHFYLEDLTASVEINLSNAKITTGLF 218

[Close]

BLAST of CsGy1G020700.1 vs. TrEMBL
Match: tr|A0A2I4GYY1|A0A2I4GYY1_9ROSI (DNA polymerase epsilon subunit OS=Juglans regia OX=51240 GN=LOC109012089 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.5e-69
Identity = 140/225 (62.22%), Postives = 176/225 (78.22%), Query Frame = 0


Query: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60
           M++ T+RKKV+RK KIRG Y++K+EALDEI+SFV+R  G +D+A++ +LD L  ESLKS 
Sbjct: 1   MNSSTIRKKVERKCKIRG-YTLKVEALDEILSFVNRFQGAQDDALDLLLDQLEHESLKSS 60

Query: 61  ILDKDAVHRVISIMVAADKVGEESPNTI-----TSTSALCIINAFDIPK----------- 120
           I+DKD VHRV+S+++ A+   E+ P+       +S S++ +I+AF +PK           
Sbjct: 61  IIDKDPVHRVVSLLLEAEAAAEDGPDIDGVTGGSSASSIRVIDAFLVPKFRYDPIKKIFY 120

Query: 121 -HTENLPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLV 180
            HT  LPIHG+ASAKAALY+DRFL+L QRL+RDQHFSKPAFD  MSHFGSCEISPIQSLV
Sbjct: 121 EHTGGLPIHGEASAKAALYKDRFLMLFQRLARDQHFSKPAFDTEMSHFGSCEISPIQSLV 180

Query: 181 GQTGRKWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNFYD 209
           GQTGR+WVMGVISQ+EDGHFYLEDLTASVEINLS+A   TG F +
Sbjct: 181 GQTGRRWVMGVISQLEDGHFYLEDLTASVEINLSNAKITTGFFLE 224

[Close]

BLAST of CsGy1G020700.1 vs. TrEMBL
Match: tr|A0A2I4GYY9|A0A2I4GYY9_9ROSI (DNA polymerase epsilon subunit OS=Juglans regia OX=51240 GN=LOC109012089 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.5e-69
Identity = 140/225 (62.22%), Postives = 176/225 (78.22%), Query Frame = 0


Query: 1   MDTLTLRKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSP 60
           M++ T+RKKV+RK KIRG Y++K+EALDEI+SFV+R  G +D+A++ +LD L  ESLKS 
Sbjct: 1   MNSSTIRKKVERKCKIRG-YTLKVEALDEILSFVNRFQGAQDDALDLLLDQLEHESLKSS 60

Query: 61  ILDKDAVHRVISIMVAADKVGEESPNTI-----TSTSALCIINAFDIPK----------- 120
           I+DKD VHRV+S+++ A+   E+ P+       +S S++ +I+AF +PK           
Sbjct: 61  IIDKDPVHRVVSLLLEAEAAAEDGPDIDGVTGGSSASSIRVIDAFLVPKFRYDPIKKIFY 120

Query: 121 -HTENLPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLV 180
            HT  LPIHG+ASAKAALY+DRFL+L QRL+RDQHFSKPAFD  MSHFGSCEISPIQSLV
Sbjct: 121 EHTGGLPIHGEASAKAALYKDRFLMLFQRLARDQHFSKPAFDTEMSHFGSCEISPIQSLV 180

Query: 181 GQTGRKWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTGNFYD 209
           GQTGR+WVMGVISQ+EDGHFYLEDLTASVEINLS+A   TG F +
Sbjct: 181 GQTGRRWVMGVISQLEDGHFYLEDLTASVEINLSNAKITTGFFLE 224

[Close]

BLAST of CsGy1G020700.1 vs. TrEMBL
Match: tr|A5AMH8|A5AMH8_VITVI (DNA polymerase epsilon subunit OS=Vitis vinifera OX=29760 GN=VITISV_038180 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 3.9e-68
Identity = 140/209 (66.99%), Postives = 169/209 (80.86%), Query Frame = 0


Query: 7   RKKVQRKAKIRGLYSIKLEALDEIVSFVSRSHGFEDEAIEFVLDNLHEESLKSPILDKDA 66
           RKKVQRK KIRG Y++K+EALDEI+SF+S     EDEAI+ +LD L  ESLKS ILDK++
Sbjct: 6   RKKVQRKFKIRG-YTLKVEALDEILSFLSHFQDAEDEAIDLLLDELENESLKSSILDKES 65

Query: 67  VHRVISIMVAADKVGEESPNTITSTSALCIINAFDIPK------------HTENLPIHGD 126
           VHRV+S+++ A+   EE+P  I++ SAL I++AF + K            +T  L IHGD
Sbjct: 66  VHRVVSLLLEAEAAVEETPGAISTRSALRIVDAFLMSKFCYDPIKKIFYENTGRLAIHGD 125

Query: 127 ASAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRKWVMGV 186
           ASAK+ALYR+RFLLL QRLSRDQHFSKPAFD  MSHFGSCEISPIQSL+GQTG++WVMGV
Sbjct: 126 ASAKSALYRNRFLLLFQRLSRDQHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKRWVMGV 185

Query: 187 ISQMEDGHFYLEDLTASVEINLSSAISFT 204
           ISQ+EDGHF+LEDLTASVEINLS+AISFT
Sbjct: 186 ISQLEDGHFFLEDLTASVEINLSNAISFT 213

The following BLAST results are available for this feature:

BLAST of CsGy1G020700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65523.1	1.7e-112	95.13	hypothetical protein Csa_1G434690 [Cucumis sativus]	[more]
XP_011657177.1	8.6e-104	93.09	PREDICTED: DNA polymerase epsilon subunit 2 [Cucumis sativus]	[more]
XP_016899382.1	3.8e-91	82.57	PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 2 [Cucumis melo]	[more]
XP_023525784.1	2.6e-84	77.98	DNA polymerase epsilon subunit B [Cucurbita pepo subsp. pepo]	[more]
XP_022998323.1	3.4e-84	77.98	DNA polymerase epsilon subunit B [Cucurbita maxima]	[more]

BLAST of CsGy1G020700.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22110.1	2.4e-52	54.93	DNA polymerase epsilon subunit B2	[more]

BLAST of CsGy1G020700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q500V9\|DPB2_ARATH	4.4e-51	54.93	DNA polymerase epsilon subunit B OS=Arabidopsis thaliana OX=3702 GN=DPB2 PE=1 SV...	[more]
sp\|Q54Y85\|DPOE2_DICDI	1.9e-17	30.92	DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum OX=44689 GN=pole2 P...	[more]
sp\|A7YWS7\|DPOE2_BOVIN	3.7e-13	28.18	DNA polymerase epsilon subunit 2 OS=Bos taurus OX=9913 GN=POLE2 PE=2 SV=1	[more]
sp\|O54956\|DPOE2_MOUSE	5.3e-12	28.18	DNA polymerase epsilon subunit 2 OS=Mus musculus OX=10090 GN=Pole2 PE=2 SV=2	[more]
sp\|P56282\|DPOE2_HUMAN	2.0e-11	26.82	DNA polymerase epsilon subunit 2 OS=Homo sapiens OX=9606 GN=POLE2 PE=1 SV=2	[more]

BLAST of CsGy1G020700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUV9\|A0A0A0LUV9_CUCSA	1.1e-112	95.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434690 PE=4 SV=1	[more]
tr\|A0A1S4DTQ5\|A0A1S4DTQ5_CUCME	2.5e-91	82.57	DNA polymerase epsilon subunit OS=Cucumis melo OX=3656 GN=LOC103501415 PE=3 SV=1	[more]
tr\|A0A2I4GYY1\|A0A2I4GYY1_9ROSI	3.5e-69	62.22	DNA polymerase epsilon subunit OS=Juglans regia OX=51240 GN=LOC109012089 PE=3 SV...	[more]
tr\|A0A2I4GYY9\|A0A2I4GYY9_9ROSI	3.5e-69	62.22	DNA polymerase epsilon subunit OS=Juglans regia OX=51240 GN=LOC109012089 PE=3 SV...	[more]
tr\|A5AMH8\|A5AMH8_VITVI	3.9e-68	66.99	DNA polymerase epsilon subunit OS=Vitis vinifera OX=29760 GN=VITISV_038180 PE=3 ...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0051781	positive regulation of cell division
cellular_component	GO:0008622	epsilon DNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0070182	DNA polymerase binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G020700	CsGy1G020700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G020700.1	CsGy1G020700.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G020700.1.exon.1	CsGy1G020700.1.exon.1	exon
CsGy1G020700.1.exon.2	CsGy1G020700.1.exon.2	exon
CsGy1G020700.1.exon.3	CsGy1G020700.1.exon.3	exon
CsGy1G020700.1.exon.4	CsGy1G020700.1.exon.4	exon
CsGy1G020700.1.exon.5	CsGy1G020700.1.exon.5	exon
CsGy1G020700.1.exon.6	CsGy1G020700.1.exon.6	exon
CsGy1G020700.1.exon.7	CsGy1G020700.1.exon.7	exon
CsGy1G020700.1.exon.8	CsGy1G020700.1.exon.8	exon
CsGy1G020700.1.exon.9	CsGy1G020700.1.exon.9	exon
CsGy1G020700.1.exon.10	CsGy1G020700.1.exon.10	exon
CsGy1G020700.1.exon.11	CsGy1G020700.1.exon.11	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G020700.1.five_prime_UTR.1	CsGy1G020700.1.five_prime_UTR.1	five_prime_UTR
CsGy1G020700.1.five_prime_UTR.2	CsGy1G020700.1.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G020700.1.CDS.1	CsGy1G020700.1.CDS.1	CDS
CsGy1G020700.1.CDS.2	CsGy1G020700.1.CDS.2	CDS
CsGy1G020700.1.CDS.3	CsGy1G020700.1.CDS.3	CDS
CsGy1G020700.1.CDS.4	CsGy1G020700.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G020700.1.three_prime_UTR.1	CsGy1G020700.1.three_prime_UTR.1	three_prime_UTR
CsGy1G020700.1.three_prime_UTR.2	CsGy1G020700.1.three_prime_UTR.2	three_prime_UTR
CsGy1G020700.1.three_prime_UTR.3	CsGy1G020700.1.three_prime_UTR.3	three_prime_UTR
CsGy1G020700.1.three_prime_UTR.4	CsGy1G020700.1.three_prime_UTR.4	three_prime_UTR
CsGy1G020700.1.three_prime_UTR.5	CsGy1G020700.1.three_prime_UTR.5	three_prime_UTR
CsGy1G020700.1.three_prime_UTR.6	CsGy1G020700.1.three_prime_UTR.6	three_prime_UTR
CsGy1G020700.1.three_prime_UTR.7	CsGy1G020700.1.three_prime_UTR.7	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12708	DNA POLYMERASE EPSILON SUBUNIT B	coord: 4..207