CsGy1G017360.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G017360.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	serine-rich protein-like protein
Location	Chr1 : 15571557 .. 15572513 (-)
Sequence length	294

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGCAACTGGATTGGCTGTTTCTTGAATTCCCCCTTTTTTTTAGTTGCTTAATCAGTCGTTTGTACGTGTAGTAGATCTGGATGTCTGTTTTTGTTCCTGATTTCGATCTTCTTCCTTCGCTGAATTTCCAGATGAGTTTGTAGATATAGTACTCTGTTTGTGTACAGATTATTTCGAGACGACATTGGATCTTGACGATTCTACAAGTCTTTCTTGAAATATAATTAGTTTTTTTTTCTTTCTCTCTTTCATTTCTTTTGCATCTTTTCCTCTGTTTCTTCTTCTCTGATTCTTGCAACTGGCAAATGCAAGCGAAGTCGTAATAAACGGATGATGATTCATTACATCTTGAAATGTTTTCTTGATTTCTTTATCAAGAACTTCCACAAATTATGTTCTTAGGAATATATTCCACTTTTTTGGGGAATCTTTTCTCTGTTTTTGATAGAGATTTTGGAGTATGGTTGCATTCAATGTATCCTTCAATGGAATCTTACTATAATTTGATATTGTTGAAGAACACTATTAATTTCGCATTTAAATTTTACTTTGCTTAAGCTTTAAGCAAGTTTTGTTGTTAATAGTGTGTAATTTCCTTCCTTTTCATTGCTCACAAGTTTGTATTTCTAATTTTATTTCAAGATTCTGA

mRNA sequence

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGATTCTGA

Coding sequence (CDS)

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGATTCTGA

Protein sequence

MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF

Homology

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BLAST of CsGy1G017360.1 vs. NCBI nr
Match: XP_011655735.1 (PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus] >KGN65201.1 hypothetical protein Csa_1G264520 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 1.0e-40
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD
Sbjct: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
          LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF
Sbjct: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 97

[Close]

BLAST of CsGy1G017360.1 vs. NCBI nr
Match: XP_008443918.1 (PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 2.7e-33
Identity = 76/97 (78.35%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS           ++A+
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSS-------SSAE 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
          LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSRF
Sbjct: 61 LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRF 90

[Close]

BLAST of CsGy1G017360.1 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 69/100 (69.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSS  K  + G SRKCLCSPTTHPGSFRCS HRNR K+S+          ITTA 
Sbjct: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSA-RSSSSSIAAITTAQ 60

Query: 61 LE---LAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
          L+   LAKANALRSFLLQ+I PSS DLQRRRNF P+PSRF
Sbjct: 61 LKLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRF 99

[Close]

BLAST of CsGy1G017360.1 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 4.7e-25
Identity = 67/100 (67.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MA+KS S   K  + G+SRKCLCSPTTHPGSFRCSFHRNR K +S          IT+A 
Sbjct: 1  MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRK-ASARSSSSSITAITSAQ 60

Query: 61 LEL---AKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
          LEL   AKANA+R+FLL +I+PSSNDLQRRRNFHPRPSRF
Sbjct: 61 LELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRF 99

[Close]

BLAST of CsGy1G017360.1 vs. NCBI nr
Match: XP_022921799.1 (uncharacterized protein LOC111429944 [Cucurbita moschata])

HSP 1 Score: 122.9 bits (307), Expect = 6.1e-25
Identity = 68/100 (68.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSS  K  + G SRKCLCSPTTHPGSFRCS HRNR K+S+          ITTA 
Sbjct: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSA-RSSSSSIAAITTAQ 60

Query: 61 LE---LAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
          L+   LAKANALRSFL Q+I PSS DLQRRRNF P+PSRF
Sbjct: 61 LKLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRF 99

[Close]

BLAST of CsGy1G017360.1 vs. TAIR10
Match: AT5G11090.1 (serine-rich protein-related)

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-09
Identity = 38/93 (40.86%), Postives = 48/93 (51.61%), Query Frame = 0


Query: 18  SRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTADLEL---AKANAL----- 77
           SR+C+CSPTTHPGSFRCS H+N                 TT  L +   A  N+L     
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKN-----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGG 179

Query: 78  ------RSFLLQMIKPSSNDLQRRRNFHPRPSR 97
                 R  L  +I+PSS+ L+RR  + PRPSR
Sbjct: 180 VEGEWVRRALTTLIRPSSHHLKRRAAYQPRPSR 207

[Close]

BLAST of CsGy1G017360.1 vs. TAIR10
Match: AT5G25280.1 (serine-rich protein-related)

HSP 1 Score: 57.4 bits (137), Expect = 5.7e-09
Identity = 41/110 (37.27%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
           ++S   S+ HK P   + R+C+CSPTTHPGSFRCS H+N                 TT  
Sbjct: 108 VSSNKPSNHHKIP--DSRRRCMCSPTTHPGSFRCSLHKN-----VANPHGQGTASYTTNG 167

Query: 61  LEL---AKANAL-----------RSFLLQMIKPSSNDLQRRRNFHPRPSR 97
           L +   A  N+L           R  L  +I+PSS+ L+RR  + PR SR
Sbjct: 168 LNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSR 210

[Close]

BLAST of CsGy1G017360.1 vs. TAIR10
Match: AT5G20370.1 (serine-rich protein-related)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-08
Identity = 43/114 (37.72%), Postives = 47/114 (41.23%), Query Frame = 0


Query: 7   SSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD------ 66
           SS H+       RKCLCSPTTHPGSFRCSFHR      S              D      
Sbjct: 62  SSNHQ-----TKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVN 121

Query: 67  -----LELAKANAL------------RSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
                 +LA  N+L            RS    + KPSS    RR  F PR SRF
Sbjct: 122 VGLNLRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

[Close]

BLAST of CsGy1G017360.1 vs. TAIR10
Match: AT3G13227.1 (serine-rich protein-related)

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 15/25 (60.00%), Postives = 20/25 (80.00%), Query Frame = 0


Query: 14 TNGASRKCLCSPTTHPGSFRCSFHR 39
          ++   + CLC+PTTHPGSFRC +HR
Sbjct: 58 SSSVRQNCLCAPTTHPGSFRCRYHR 82

[Close]

BLAST of CsGy1G017360.1 vs. TAIR10
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.3e-04
Identity = 20/38 (52.63%), Postives = 23/38 (60.53%), Query Frame = 0


Query: 2  ASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRN 40
          A + GS      T+     CLCSPTTHPGSFRC  HR+
Sbjct: 25 AVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of CsGy1G017360.1 vs. TrEMBL
Match: tr|A0A0A0LYY6|A0A0A0LYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.9e-41
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD
Sbjct: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
          LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF
Sbjct: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 97

[Close]

BLAST of CsGy1G017360.1 vs. TrEMBL
Match: tr|A0A1S3B8Q0|A0A1S3B8Q0_CUCME (uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-33
Identity = 76/97 (78.35%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS           ++A+
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSS-------SSAE 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
          LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSRF
Sbjct: 61 LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRF 90

[Close]

BLAST of CsGy1G017360.1 vs. TrEMBL
Match: tr|B9SZN1|B9SZN1_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1372180 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASK+ SS  K  T+  +R CLCSPTTHPGSFRCS HRN ++ S+               
Sbjct: 1  MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSNRSRTAHVSPRKWELS 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
          + +AKAN+L++FLLQ+IKPSS+DLQRRRNF PRP+RF
Sbjct: 61 V-IAKANSLKAFLLQIIKPSSHDLQRRRNFQPRPTRF 96

[Close]

BLAST of CsGy1G017360.1 vs. TrEMBL
Match: tr|A0A2P5DX22|A0A2P5DX22_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_239540 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MA+K+ +S+ K    G  R CLCSPTTHPGSFRCS HRN HK  S          +T+  
Sbjct: 1  MATKNTASSQKRHVVG--RTCLCSPTTHPGSFRCSLHRNPHKPRSATTVR-----VTSGP 60

Query: 61 LE---LAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
           E   +AKAN++++FLLQ+IKPSS+DL RRRNF PRPSRF
Sbjct: 61 WEAAMVAKANSIKAFLLQIIKPSSHDLHRRRNFKPRPSRF 93

[Close]

BLAST of CsGy1G017360.1 vs. TrEMBL
Match: tr|A0A2C9VP58|A0A2C9VP58_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G043000 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-17
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1  MASKSGSSTHKFPTNGAS---RKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLIT 60
          MASK   S  K     A+   R CLCSPTTHPGSFRCS HRN  ++ S XXXXXXXX   
Sbjct: 1  MASKRAPSDSKSQMKQAASQGRTCLCSPTTHPGSFRCSLHRNYQRVPSRXXXXXXXXXXW 60

Query: 61 TADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
             + +AKAN+L++FLLQ+IKPSS+DLQRRRNF PRPSRF
Sbjct: 61 ELAV-IAKANSLKAFLLQIIKPSSHDLQRRRNFRPRPSRF 99

The following BLAST results are available for this feature:

BLAST of CsGy1G017360.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655735.1	1.0e-40	100.00	PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus] >KGN65201.1 hy...	[more]
XP_008443918.1	2.7e-33	78.35	PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo]	[more]
XP_023515429.1	1.2e-25	69.00	uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]	[more]
XP_022927032.1	4.7e-25	67.00	uncharacterized protein LOC111433980 [Cucurbita moschata]	[more]
XP_022921799.1	6.1e-25	68.00	uncharacterized protein LOC111429944 [Cucurbita moschata]	[more]

BLAST of CsGy1G017360.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11090.1	2.6e-09	40.86	serine-rich protein-related	[more]
AT5G25280.1	5.7e-09	37.27	serine-rich protein-related	[more]
AT5G20370.1	2.2e-08	37.72	serine-rich protein-related	[more]
AT3G13227.1	1.9e-04	60.00	serine-rich protein-related	[more]
AT1G67910.1	4.3e-04	52.63	unknown protein	[more]

BLAST of CsGy1G017360.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G017360.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYY6\|A0A0A0LYY6_CUCSA	6.9e-41	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1	[more]
tr\|A0A1S3B8Q0\|A0A1S3B8Q0_CUCME	1.8e-33	78.35	uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=...	[more]
tr\|B9SZN1\|B9SZN1_RICCO	2.5e-19	56.70	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1372180 PE=4 SV=1	[more]
tr\|A0A2P5DX22\|A0A2P5DX22_9ROSA	1.4e-17	56.00	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_239540 PE=4 S...	[more]
tr\|A0A2C9VP58\|A0A2C9VP58_MANES	3.1e-17	63.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G043000 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G017360	CsGy1G017360	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G017360.1.CDS.2	CsGy1G017360.1.CDS.2	CDS
CsGy1G017360.1.CDS.1	CsGy1G017360.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G017360.1.exon.2	CsGy1G017360.1.exon.2	exon
CsGy1G017360.1.exon.1	CsGy1G017360.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G017360.1	CsGy1G017360.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 2..97
None	No IPR available	PANTHER	PTHR33132:SF28	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 2..97