CsGy1G016670 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G016670
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Omega-6 fatty acid desaturase
Location	Chr1 : 13917095 .. 13918880 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCATGTTGCTGAGGCCTTCATTGAGAAAAATTATCACCCAACAGTCATTTGTCGGGGTAATTTTTGTTTTTTAGCCAGTGATTTCATCTTGGATATTGATCATAACGTGATCCTTATAAACATCCATTTCCTTTGTTACAGCCTATAACAAAGCTCTAGAGGATGCACTTGCTGTGCTTGATAAAATAGCTATGGACATCGATGTGAAAGATCGTAAGTTACTTGAATTCCCTTACCTTTGACTTGTTGAGTGAAATGGCCTTCAGTACAATCATGTACTCATGTCTACTAACTTAGACACCAGATGCTAAACCAAATGCTTCAATATATTTCCTCTCAAACAATTACTGGTTTATTCCATTAAAAACTACAATAATTGGAAAGATCTCTACTCTACTAATGACTATCATGTGACAGGCACTGCTATGTTGGGGCTGGTCAAAAGCTGCATAGGCACCAAGTTCACTAGTCAATTTGGAGATCTGATTGCTGTAAGAATTTTAGTTCATTGCCTTGTGACATTGTTGTATGATTTCATTTATTTGTATATTTTCAATCTAACACGTGAATCATTTTTAGAAGTTGGAAAATGATCCATCTCTATAATGGCTATGTAGATTAGTTTCTGTAGACTAGTTGAAATATTGATTGATTGGTTCATCCACTCTTTCTTTTAAGGATGCCAGATCTTTAGATTCAGTGTCAAGATTTTTAGGAGGTTGTTGCAGAAGACAACTTAAATAGATAATTTGGTTATTTTCAGATATTTTTGGCCTATAAGGATGCCAGGTCTTTATATTTTTGATGTTATAAGTTTTTAGGAGGAGATTTGTCTAGTAGACCCGTTGCTTGATTTATTTTCATTTGCAGAAGATACTAGTCATGTGTAGCCTACAAGAAGTTATAATCTTATTTGCAGATAGTCCAAGTTTTCTAGTGAATTTAAATTTAATTATTTCAAGGGTTTTTTTCTTTTTTCTTTTTCAAGAGTTGAATATTGAAGAAAATTTAGGCTGTTATTTGTGGATAGTGTATAGACTATGTGCATTTAAAATCTTATTTGTACTCTAAAGATCTAATTGTGATGATCAAGGGATTCCCTCTCCATTTGTAATGTAGAGGTGTTTTTTTGTGGCAAGTTAGAGTGAATCATTCATTTCAGTGTCTTTTTTTCCTTTTCTTTTCTTTTCTCTTCTCTTTTCTTGCTTAATTCGACTCTAAGCCGATAAAAAGGCACATCGGAAAAAGATTCAGGCACTGTTCATGAGATTCTCTAGTCTTGAAATTGCTAGATAATTCATGTTAACTAAGATTTATTACCATAAGTCACATTGACTTAGCTTCTAAGTTTATCCTCTCCCATCTACAGGATCGAGATTCTCTGCCATGACATCAATGTGCACATTCCCCACCATATTTCTCCAAGAATACCGAGTTACAACTTACGGGCAGCTCATAAGTCTCTTCAAGAAAACTGGGGAAAGGTAATGGGGTTAAACCAAATGCATATGTACGTAGTTCGATGTTCAGATCTTGCAAAATCTAATGGTTGCCTTGTTTATTGCATATATTTTCCCCCATTGATGCTAATAATCTAGTTCTTTTCTTCCACTTTGTTACACATTCTGTAGCATCTGAATGAGGCTTCATGGAATTGGCGATTAATGAAGACGATCATGACGATATGCCATGTATACAACAAAGAGGAAAATGACCGACTCAATAAAGAAGATTCTTATCCCATTACATTCCTCAAGAAAGTCATGCCTGATCTTGCTTGA

mRNA sequence

ATGCTCCATGTTGCTGAGGCCTTCATTGAGAAAAATTATCACCCAACAGTCATTTGTCGGGCCTATAACAAAGCTCTAGAGGATGCACTTGCTGTGCTTGATAAAATAGCTATGGACATCGATGTGAAAGATCGCACTGCTATGTTGGGGCTGGTCAAAAGCTGCATAGGCACCAAGTTCACTAGTCAATTTGGAGATCTGATTGCTATATTTTTGGCCTATAAGGATGCCAGGATCGAGATTCTCTGCCATGACATCAATGTGCACATTCCCCACCATATTTCTCCAAGAATACCGAGTTACAACTTACGGGCAGCTCATAAGTCTCTTCAAGAAAACTGGGGAAAGCATCTGAATGAGGCTTCATGGAATTGGCGATTAATGAAGACGATCATGACGATATGCCATGTATACAACAAAGAGGAAAATGACCGACTCAATAAAGAAGATTCTTATCCCATTACATTCCTCAAGAAAGTCATGCCTGATCTTGCTTGA

Coding sequence (CDS)

ATGCTCCATGTTGCTGAGGCCTTCATTGAGAAAAATTATCACCCAACAGTCATTTGTCGGGCCTATAACAAAGCTCTAGAGGATGCACTTGCTGTGCTTGATAAAATAGCTATGGACATCGATGTGAAAGATCGCACTGCTATGTTGGGGCTGGTCAAAAGCTGCATAGGCACCAAGTTCACTAGTCAATTTGGAGATCTGATTGCTATATTTTTGGCCTATAAGGATGCCAGGATCGAGATTCTCTGCCATGACATCAATGTGCACATTCCCCACCATATTTCTCCAAGAATACCGAGTTACAACTTACGGGCAGCTCATAAGTCTCTTCAAGAAAACTGGGGAAAGCATCTGAATGAGGCTTCATGGAATTGGCGATTAATGAAGACGATCATGACGATATGCCATGTATACAACAAAGAGGAAAATGACCGACTCAATAAAGAAGATTCTTATCCCATTACATTCCTCAAGAAAGTCATGCCTGATCTTGCTTGA

Protein sequence

MLHVAEAFIEKNYHPTVICRAYNKALEDALAVLDKIAMDIDVKDRTAMLGLVKSCIGTKFTSQFGDLIAIFLAYKDARIEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVYNKEENDRLNKEDSYPITFLKKVMPDLA

Homology

[Close]

BLAST of CsGy1G016670 vs. NCBI nr
Match: XP_004146685.1 (PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X1 [Cucumis sativus] >KGN65155.1 hypothetical protein Csa_1G255170 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY
Sbjct: 353 IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 412

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           NKEEN    DRLNKEDSYPITFLKKVMPDLA
Sbjct: 413 NKEENYVAFDRLNKEDSYPITFLKKVMPDLA 443

[Close]

BLAST of CsGy1G016670 vs. NCBI nr
Match: XP_011655551.1 (PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY
Sbjct: 342 IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 401

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           NKEEN    DRLNKEDSYPITFLKKVMPDLA
Sbjct: 402 NKEENYVAFDRLNKEDSYPITFLKKVMPDLA 432

[Close]

BLAST of CsGy1G016670 vs. NCBI nr
Match: XP_008443861.1 (PREDICTED: omega-6 fatty acid desaturase, chloroplastic [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 1.4e-42
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHH+SPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMT+CHVY
Sbjct: 353 IEILCHDINVHIPHHVSPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTVCHVY 412

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           +KEEN    DRLNKEDSYPITFLKKVMPDLA
Sbjct: 413 SKEENYVAFDRLNKEDSYPITFLKKVMPDLA 443

[Close]

BLAST of CsGy1G016670 vs. NCBI nr
Match: XP_022930407.1 (omega-6 fatty acid desaturase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 178.3 bits (451), Expect = 2.1e-41
Identity = 84/91 (92.31%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY
Sbjct: 353 IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 412

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           +KEEN    DRL  EDSYPITFLKKVMPDLA
Sbjct: 413 SKEENYVAFDRLKPEDSYPITFLKKVMPDLA 443

[Close]

BLAST of CsGy1G016670 vs. NCBI nr
Match: XP_023529482.1 (omega-6 fatty acid desaturase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.8 bits (447), Expect = 6.1e-41
Identity = 82/91 (90.11%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVH+PHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY
Sbjct: 353 IEILCHDINVHVPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 412

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           +KEEN    DRL  EDSYPITFL+KVMPDLA
Sbjct: 413 SKEENYVAFDRLKPEDSYPITFLRKVMPDLA 443

[Close]

BLAST of CsGy1G016670 vs. TAIR10
Match: AT4G30950.1 (fatty acid desaturase 6)

HSP 1 Score: 155.2 bits (391), Expect = 3.4e-38
Identity = 71/89 (79.78%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAH+S+QENWGK+ N A+WNWRLMKTIMT+CHVY
Sbjct: 357 IEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKYTNLATWNWRLMKTIMTVCHVY 416

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPD 164
           +KEEN    DRL  E+S PITFLKK MP+
Sbjct: 417 DKEENYIPFDRLAPEESQPITFLKKAMPN 445

[Close]

BLAST of CsGy1G016670 vs. TAIR10
Match: AT5G26360.1 (TCP-1/cpn60 chaperonin family protein)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MLHVAEAFIEKNYHPTVICRAYNKALEDALAVLDKIAMDIDVKDRTAMLGLVKSCIGTKF 60
           MLHVAEAF+EKNYHPTVICRAY KALED++AVLDKIAM ID+ DR+ +LGLVKSCIGTKF
Sbjct: 103 MLHVAEAFLEKNYHPTVICRAYIKALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGTKF 162

Query: 61  TSQFGDLIA 70
           TSQFGDLIA
Sbjct: 163 TSQFGDLIA 171

[Close]

BLAST of CsGy1G016670 vs. Swiss-Prot
Match: sp|P48627|FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus OX=3708 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.3e-38
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAH+S+QENWGK+ N A+WNWRLMKTIMT+CHVY
Sbjct: 352 IEILCHDINVHIPHHISPRIPSYNLRAAHQSIQENWGKYTNLATWNWRLMKTIMTVCHVY 411

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           +KEEN    DRL  E+S PITFLKK MPD A
Sbjct: 412 DKEENYIPFDRLAPEESQPITFLKKAMPDYA 442

[Close]

BLAST of CsGy1G016670 vs. Swiss-Prot
Match: sp|P46312|FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FAD6 PE=1 SV=2)

HSP 1 Score: 155.2 bits (391), Expect = 6.2e-37
Identity = 71/89 (79.78%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAH+S+QENWGK+ N A+WNWRLMKTIMT+CHVY
Sbjct: 357 IEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKYTNLATWNWRLMKTIMTVCHVY 416

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPD 164
           +KEEN    DRL  E+S PITFLKK MP+
Sbjct: 417 DKEENYIPFDRLAPEESQPITFLKKAMPN 445

[Close]

BLAST of CsGy1G016670 vs. Swiss-Prot
Match: sp|P48628|FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-30
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWG++LNEASWNWRLMKTIMT+C VY
Sbjct: 351 IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGQYLNEASWNWRLMKTIMTVCQVY 410

Query: 139 NKEEN 144
           +KE++
Sbjct: 411 DKEKS 415

[Close]

BLAST of CsGy1G016670 vs. Swiss-Prot
Match: sp|P48629|FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea OX=3562 GN=FAD6 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 58/91 (63.74%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDI+VHIPHHISP+IPSYNLRAA++SL ENWG++LN+   NWRLM+TIMT CH+Y
Sbjct: 357 IEILCHDISVHIPHHISPKIPSYNLRAANQSLNENWGEYLNKPKSNWRLMRTIMTTCHIY 416

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           +K+ N    ++   E+S PI+  K+VMPD A
Sbjct: 417 DKDGNYVSFEKAVPEESQPISIPKRVMPDYA 447

[Close]

BLAST of CsGy1G016670 vs. Swiss-Prot
Match: sp|Q84WV1|TCPG_ARATH (T-complex protein 1 subunit gamma OS=Arabidopsis thaliana OX=3702 GN=CCT3 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-27
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MLHVAEAFIEKNYHPTVICRAYNKALEDALAVLDKIAMDIDVKDRTAMLGLVKSCIGTKF 60
           MLHVAEAF+EKNYHPTVICRAY KALED++AVLDKIAM ID+ DR+ +LGLVKSCIGTKF
Sbjct: 103 MLHVAEAFLEKNYHPTVICRAYIKALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGTKF 162

Query: 61  TSQFGDLIA 70
           TSQFGDLIA
Sbjct: 163 TSQFGDLIA 171

[Close]

BLAST of CsGy1G016670 vs. TrEMBL
Match: tr|A0A0A0LTB1|A0A0A0LTB1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255170 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY
Sbjct: 353 IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 412

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           NKEEN    DRLNKEDSYPITFLKKVMPDLA
Sbjct: 413 NKEENYVAFDRLNKEDSYPITFLKKVMPDLA 443

[Close]

BLAST of CsGy1G016670 vs. TrEMBL
Match: tr|A0A1S3B9S5|A0A1S3B9S5_CUCME (omega-6 fatty acid desaturase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487358 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.6e-43
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHH+SPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMT+CHVY
Sbjct: 353 IEILCHDINVHIPHHVSPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTVCHVY 412

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           +KEEN    DRLNKEDSYPITFLKKVMPDLA
Sbjct: 413 SKEENYVAFDRLNKEDSYPITFLKKVMPDLA 443

[Close]

BLAST of CsGy1G016670 vs. TrEMBL
Match: tr|A0A2P6RI95|A0A2P6RI95_ROSCH (Putative acyl-CoA (9+3)-desaturase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0085771 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.1e-38
Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAHKS+QENWGK+LNEA+WNWRLMKTIMT+CHVY
Sbjct: 350 IEILCHDINVHIPHHISPRIPSYNLRAAHKSIQENWGKYLNEATWNWRLMKTIMTVCHVY 409

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           NKEEN    D L  EDS PI FLKKVMPD A
Sbjct: 410 NKEENYIPFDELAPEDSLPIAFLKKVMPDYA 440

[Close]

BLAST of CsGy1G016670 vs. TrEMBL
Match: tr|E6Y9A8|E6Y9A8_ARAHY (Chloroplast omega-6 fatty acid desaturase OS=Arachis hypogaea OX=3818 GN=fad6 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 76/91 (83.52%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGK+LNEASWNWRLMKTIMT+CHVY
Sbjct: 352 IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKYLNEASWNWRLMKTIMTVCHVY 411

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           +K++N    D L  EDS PITFLK+VMPD A
Sbjct: 412 DKQQNYVAFDELAPEDSRPITFLKEVMPDYA 442

[Close]

BLAST of CsGy1G016670 vs. TrEMBL
Match: tr|A0A2R6QS37|A0A2R6QS37_ACTCH (Omega-6 fatty acid desaturase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14552 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 79  IEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVY 138
           IEILCHDINVHIPHHISPRIPSYNLRAAH+SL+ENWGK+LNEA+WNWRLMKTI+T+CHVY
Sbjct: 351 IEILCHDINVHIPHHISPRIPSYNLRAAHQSLRENWGKYLNEATWNWRLMKTILTVCHVY 410

Query: 139 NKEEN----DRLNKEDSYPITFLKKVMPDLA 166
           +KE+N    D L  ++SYPITFLKKVMPD A
Sbjct: 411 SKEQNYVAFDELTPKESYPITFLKKVMPDYA 441

The following BLAST results are available for this feature:

BLAST of CsGy1G016670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146685.1	2.2e-43	95.60	PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X1 [Cucumis sati...	[more]
XP_011655551.1	2.2e-43	95.60	PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X2 [Cucumis sati...	[more]
XP_008443861.1	1.4e-42	92.31	PREDICTED: omega-6 fatty acid desaturase, chloroplastic [Cucumis melo]	[more]
XP_022930407.1	2.1e-41	92.31	omega-6 fatty acid desaturase, chloroplastic-like [Cucurbita moschata]	[more]
XP_023529482.1	6.1e-41	90.11	omega-6 fatty acid desaturase, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G016670 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30950.1	3.4e-38	79.78	fatty acid desaturase 6	[more]
AT5G26360.1	1.1e-28	85.51	TCP-1/cpn60 chaperonin family protein	[more]

BLAST of CsGy1G016670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P48627\|FAD6C_BRANA	7.3e-38	80.22	Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus OX=3708 PE=1 SV=1	[more]
sp\|P46312\|FAD6C_ARATH	6.2e-37	79.78	Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|P48628\|FAD6C_SOYBN	1.5e-30	89.23	Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|P48629\|FAD6C_SPIOL	1.4e-28	63.74	Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea OX=3562 GN=FAD...	[more]
sp\|Q84WV1\|TCPG_ARATH	2.0e-27	85.51	T-complex protein 1 subunit gamma OS=Arabidopsis thaliana OX=3702 GN=CCT3 PE=1 S...	[more]

BLAST of CsGy1G016670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTB1\|A0A0A0LTB1_CUCSA	1.5e-43	95.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255170 PE=4 SV=1	[more]
tr\|A0A1S3B9S5\|A0A1S3B9S5_CUCME	9.6e-43	92.31	omega-6 fatty acid desaturase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A2P6RI95\|A0A2P6RI95_ROSCH	7.1e-38	84.62	Putative acyl-CoA (9+3)-desaturase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0...	[more]
tr\|E6Y9A8\|E6Y9A8_ARAHY	3.5e-37	83.52	Chloroplast omega-6 fatty acid desaturase OS=Arachis hypogaea OX=3818 GN=fad6 PE...	[more]
tr\|A0A2R6QS37\|A0A2R6QS37_ACTCH	1.0e-36	80.22	Omega-6 fatty acid desaturase OS=Actinidia chinensis var. chinensis OX=1590841 G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006629	lipid metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027413	GROEL-like_equatorial_sf
IPR005804	FA_desaturase_dom
IPR002423	Cpn60/TCP-1
IPR027410	TCP-1-like_intermed_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G016670.1	CsGy1G016670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027410	TCP-1-like chaperonin intermediate domain superfamily	GENE3D	G3DSA:3.30.260.10		coord: 41..70 e-value: 6.8E-12 score: 46.8
IPR002423	Chaperonin Cpn60/TCP-1 family	PFAM	PF00118	Cpn60_TCP1	coord: 1..69 e-value: 8.4E-11 score: 41.1
IPR005804	Fatty acid desaturase domain	PFAM	PF00487	FA_desaturase	coord: 81..118 e-value: 2.9E-7 score: 30.5
IPR027413	GroEL-like equatorial domain superfamily	GENE3D	G3DSA:1.10.560.10		coord: 1..40 e-value: 6.8E-12 score: 46.8
IPR027413	GroEL-like equatorial domain superfamily	SUPERFAMILY	SSF48592	GroEL equatorial domain-like	coord: 1..40
None	No IPR available	PANTHER	PTHR32100:SF10	OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC	coord: 78..164
None	No IPR available	PANTHER	PTHR32100	FAMILY NOT NAMED	coord: 78..164

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G016670	Csa1G255170	Cucumber (Chinese Long) v2	cgybcuB007

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G016670	Cucurbita maxima (Rimu)	cgybcmaB010
CsGy1G016670	Cucurbita maxima (Rimu)	cgybcmaB026
CsGy1G016670	Cucurbita maxima (Rimu)	cgybcmaB033
CsGy1G016670	Cucurbita moschata (Rifu)	cgybcmoB011
CsGy1G016670	Cucurbita moschata (Rifu)	cgybcmoB031
CsGy1G016670	Cucurbita pepo (Zucchini)	cgybcpeB050
CsGy1G016670	Cucurbita pepo (Zucchini)	cgybcpeB057
CsGy1G016670	Cucurbita pepo (Zucchini)	cgybcpeB124
CsGy1G016670	Cucurbita pepo (Zucchini)	cgybcpeB131
CsGy1G016670	Bottle gourd (USVL1VR-Ls)	cgyblsiB065
CsGy1G016670	Bottle gourd (USVL1VR-Ls)	cgyblsiB074
CsGy1G016670	Melon (DHL92) v3.5.1	cgybmeB045
CsGy1G016670	Melon (DHL92) v3.5.1	cgybmeB056
CsGy1G016670	Melon (DHL92) v3.6.1	cgybmedB039
CsGy1G016670	Melon (DHL92) v3.6.1	cgybmedB051
CsGy1G016670	Watermelon (Charleston Gray)	cgybwcgB072
CsGy1G016670	Watermelon (Charleston Gray)	cgybwcgB082
CsGy1G016670	Watermelon (97103) v1	cgybwmB085
CsGy1G016670	Watermelon (97103) v1	cgybwmB097
CsGy1G016670	Silver-seed gourd	carcgybB0035
CsGy1G016670	Silver-seed gourd	carcgybB0135
CsGy1G016670	Silver-seed gourd	carcgybB0136
CsGy1G016670	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G016670	Watermelon (97103) v2	cgybwmbB069
CsGy1G016670	Watermelon (97103) v2	cgybwmbB080
CsGy1G016670	Wax gourd	cgybwgoB084
CsGy1G016670	Wax gourd	cgybwgoB115