Cp4.1LG17g10720.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGCGGCGCCCAATAAGCGTCTGGCGGTGACGCAAAATTCGGGACCGTATCAATGCCAGCCATTAAGTCAAATTATTTAAATCTCAAAATTACTGACCGAAGGATCAGACCATTAATCTACCGGAGAGAAAACTCGCCGCCCGGCCAGGAGGAGAATCGATCACTGCAATTCTTCGAATCTCTCCGGCTATCCAATTTCCTGCCAAAATCATGGTAATTTTCTTCCTCGTTTCGTTTCCATCTCAGATCTGTAAGTGCGGATGATTTTTGTCTAGGGTTTTGATCACTGACTCGTGATATCGATCGTTTTTCCTTAACTGAATCGTTTATCATTGAATGGATCGTTTAATTCTTTTGCTACGCAATTTTTTGTTGTGCATTGTGATCCTTTTTTCTGTTTTCTTCGTTGAGAATTCGGTCTGAATCTGATCTGTTTTGCCATTATAGGTTTTTTTTTTTGTTTGACCTTTGGCTAATTGGTTCTTATTGCATCTCATTCCGAAATTGAGTGATTAAATGTTCGTATTAGTGGTCTTTTGACAATGTAGAATATGAGGAATTAGTGATTTGAAACTAGTGATGGCCTTTGATTGGGAAATTTTTAAAGGGATTTTGTAGTCAGTATTGGTCTGAACTCTTCGTGAAACCTAATTGAGAATATTTATAAGAATAGAGAAAAAAACAGAACGGAGATTATTGAAGATTATTGGAAACAAGTAATCCCTCTTGGGTGTTAATCTAAGTTGATAGTTGTTTTCTCAAGTCTCAATTTTGTAATTTAGACCATCTTATCCTAAGATTTTTGGTCAACATATGGTTAGGTTATAGTTTTTAATGGGGAGAAATAATTGAGCTAACAAAACGATTTCATTTTGTTTTGAATTGTTAGTGCTGCTGAAACGCTGTGTATCCTAAATTTTTATATTTTGGTCTGCCTTTTTGAACAATACTTTTGTAAATGTTGTCTTCGGCTTTTGTAGACAACATCAAGGCGTCTTGCAGACCGAAAGGTGGGGAAGTTCGATAGGAATATCACAAGGAGAGGAGCTGTTCCAGAGACGACTGTTAAGAAGGGGAAGGATTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTCGTTGTCATTGGATCATGTAAGACTAATCCTTTGTTGTGTTTATATCATATAAGTTTTTGCTTCATCTGATATATAGTTTGTAGCTTAAGTTGTGGCTACCTTCTTATAAACCAAGTGTACGAGTTCTAGTTCTAGGCAAGGATTAAAATGGATAAACTCGATAAACAAATATTTCTGTGATTAAAAATTTATATATACATCTTGATATTGGTATTTAAATATGTATAATCTTTTATGGGTATTTATAAAAGATATGAGAGATATTGATTAATCTTCAATATCAATGTTGAACCCTTTGATTTACGGATTTATGGATATTTTCATCCTTGGTTCGAGGTATAGGGTGGAGTCAAGAACAAAGAAGGGAATTAACCTTAGTTTGTCTTAGCTTCAAAATAGTATTTTAAAAAAAGATCTTCAAGTTTTCATCTAACTTGAAACACTTTTTATGTTTTTTTCCACCTAGTCGAGCTGTCTGAGTTTGATGGTGCATCTTGTAAGCTCTTTTTGTATTCATTTTCAGAGTCGTCAATGCTCCATTCCTTCATTCACATTCGTCTCCTTCCCCTTTTCCACCTCAGTATTGTGAGCTCATAGCTCTAATTTTTTACTAGTCTTTCCCTCACATATTATAAAGACAGTCCCGTAAGCCTTATTGGATCCTAGCTCTCATAACATTTGTCATGTTTTCGTTCTCTGTTGCATATCTAGATCATGCTTCTTGTAAAATTTTGTCCGGGCAGAGTTTCCTGGCCTTGGGATGTGATTTTGCTCCCATGCTACCGAAACATTTTTGATAGAACAGCAAAATTGCCCGTGCGGGATATGTCAATTTGTCGCTTATTATATAGGAGGAAATAGGTTCAAGCTACCCCGTTCGTCTTCCTAAACTTAAGATCATATAGTTTTCTAGGCAACTCAATGTAGTAAGGTTGGCGATAGTGAAATTAATCTAGATGATTGCAAGAGGACTCAACCAAGAAAAACAGAACAAGTACTCTACCGTTTAACTCTTCGACTATACCAGTCAAGTCTTATGTCCTTCACATGTTAGATTATGTCCTCAATAGACGGAATTTATTCACATTGTCTTGCAATATGCGGATGAATTATCTAGGGAGGTCCCATGGTTTTATTACGTTTACCTCGCCATCCTAGAACAACCTGGCATTACCTGTCTTACAGGGTTGTGACATCTTTTTGATCTCGATTGCAAAACAACAAGCAAACTTGTCGTGTTCCAAGGATGATAGATGTATTAACCTTGAAAATCTACGTCGAACCCACCGCTAATACATACATAGTGACAACATTTTCATCTTTGCCATGTTATCCCCCTTTTGTATTCAAAGGGTATTATGAATGTTACTAATCTTTGTTTACTCAACAGCGCTCTTCCAGATAATCAGGACAGCAACAGGAGGAGGAATGGCTTGATCCGATGCTCTGATTTTGAGAATGGCATTACTGCTCGATCCCGTCCTCCCTTTCGTAGACGACACAGAAGGAAAGGGAAATTCTTCTAAAAAAGGGAATGATTCCACAGTTCGTACGTCCTGTGGATTTCAAGAACTTGATAATAGAATTGTTGGTCCTTTTCCTGCTTTGACATCATATTATTAACAATTGGTTTGGTTAAACTAATTTATTTCTTCCTTAAATGAAGTTATTTTCTATTGAGTTTTATAGTGTTTATTTCTTGTTTTCAGAACAGAATTCTTTTTTCTTTTGGACCCGAAGAACACATTTTAACTCAATTCAAAGATTCATTTCGTCATGTGGT TGGCGGCGCCCAATAAGCGTCTGGCGGTGACGCAAAATTCGGGACCGTATCAATGCCAGCCATTAAGTCAAATTATTTAAATCTCAAAATTACTGACCGAAGGATCAGACCATTAATCTACCGGAGAGAAAACTCGCCGCCCGGCCAGGAGGAGAATCGATCACTGCAATTCTTCGAATCTCTCCGGCTATCCAATTTCCTGCCAAAATCATGACAACATCAAGGCGTCTTGCAGACCGAAAGGTGGGGAAGTTCGATAGGAATATCACAAGGAGAGGAGCTGTTCCAGAGACGACTGTTAAGAAGGGGAAGGATTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTCGTTGTCATTGGATCATCGCTCTTCCAGATAATCAGGACAGCAACAGGAGGAGGAATGGCTTGATCCGATGCTCTGATTTTGAGAATGGCATTACTGCTCGATCCCGTCCTCCCTTTCGTAGACGACACAGAAGGAAAGGGAAATTCTTCTAAAAAAGGGAATGATTCCACAGTTCGTACGTCCTGTGGATTTCAAGAACTTGATAATAGAATTGTTGGTCCTTTTCCTGCTTTGACATCATATTATTAACAATTGGTTTGGTTAAACTAATTTATTTCTTCCTTAAATGAAGTTATTTTCTATTGAGTTTTATAGTGTTTATTTCTTGTTTTCAGAACAGAATTCTTTTTTCTTTTGGACCCGAAGAACACATTTTAACTCAATTCAAAGATTCATTTCGTCATGTGGT ATGACAACATCAAGGCGTCTTGCAGACCGAAAGGTGGGGAAGTTCGATAGGAATATCACAAGGAGAGGAGCTGTTCCAGAGACGACTGTTAAGAAGGGGAAGGATTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTCGTTGTCATTGGATCATCGCTCTTCCAGATAATCAGGACAGCAACAGGAGGAGGAATGGCTTGA MTTSRRLADRKVGKFDRNITRRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIRTATGGGMA
BLAST of Cp4.1LG17g10720.1 vs. Swiss-Prot
Match: SERP2_BOVIN (Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus GN=SERP2 PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 7.9e-07 Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. Swiss-Prot
Match: SERP2_HUMAN (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens GN=SERP2 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 7.9e-07 Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. Swiss-Prot
Match: SERP2_MOUSE (Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus GN=Serp2 PE=3 SV=2) HSP 1 Score: 53.9 bits (128), Expect = 7.9e-07 Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. TrEMBL
Match: A0A0A0KD83_CUCSA (Stress associated endoplasmic reticulum protein OS=Cucumis sativus GN=Csa_6G087710 PE=4 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 3.7e-27 Identity = 62/68 (91.18%), Postives = 68/68 (100.00%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. TrEMBL
Match: M5XI11_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014280mg PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 9.0e-26 Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. TrEMBL
Match: A0A061E642_THECC (Ribosome associated membrane protein RAMP4 OS=Theobroma cacao GN=TCM_008766 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 1.2e-25 Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. TrEMBL
Match: A9PER5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16960g PE=2 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 1.2e-25 Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. TrEMBL
Match: A0A0B0NAE6_GOSAR (Serp2 OS=Gossypium arboreum GN=F383_13890 PE=4 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 2.0e-25 Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. TAIR10
Match: AT1G27350.1 (AT1G27350.1 Ribosome associated membrane protein RAMP4) HSP 1 Score: 119.0 bits (297), Expect = 1.1e-27 Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. TAIR10
Match: AT1G27330.1 (AT1G27330.1 Ribosome associated membrane protein RAMP4) HSP 1 Score: 119.0 bits (297), Expect = 1.1e-27 Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. NCBI nr
Match: gi|659120090|ref|XP_008460008.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Cucumis melo]) HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27 Identity = 63/68 (92.65%), Postives = 68/68 (100.00%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. NCBI nr
Match: gi|778711512|ref|XP_011656747.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Cucumis sativus]) HSP 1 Score: 128.3 bits (321), Expect = 5.3e-27 Identity = 62/68 (91.18%), Postives = 68/68 (100.00%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. NCBI nr
Match: gi|1009152794|ref|XP_015894289.1| (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Ziziphus jujuba]) HSP 1 Score: 125.2 bits (313), Expect = 4.5e-26 Identity = 61/68 (89.71%), Postives = 67/68 (98.53%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. NCBI nr
Match: gi|596217240|ref|XP_007223937.1| (hypothetical protein PRUPE_ppa014280mg [Prunus persica]) HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25 Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1
BLAST of Cp4.1LG17g10720.1 vs. NCBI nr
Match: gi|590692151|ref|XP_007043980.1| (Ribosome associated membrane protein RAMP4 [Theobroma cacao]) HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25 Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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