Cp4.1LG16g06350.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g06350.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG16 : 6804338 .. 6807022 (-)
Sequence length	573

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCTCACCACGCATCTCTAGGTCGACGAACGCTAAGAACTTTTTGCTTGTTCGCATTCTTGCGCACCATAATGCCTTCAGTGTGTTTGTGAAATTCGGCAAAAGAGAGCGGCCGAGAGATTGAGCAAAGCTTCTTCCGGACCAGATCTGAGCGCAGCCTCCAAATCAAATGGTTTGTTATTGTTGATTCGTATGGAATTAATGTTGCGATTATTGGTTGTGGATGCAATTTGGTTTCATTGGAACAGAAACTTCTGGCGTTAGAAAATCAGAGAGCGGAAGTCGATTCTCAGAGGTAGGATCATGTTTTTTTTCTTTCCCGCCACGCCGAACCTTCCGCTTGCTTGATGTTTAGGAGTTAGAAACTTCTTTTGTATTATTAACTTTCTCGGCCATGTTCTTGTATCTTGAAATTCTGATACTGATTCTTAGGTTTCGTCTTGAATAGTTTCTTATGGATTTTTACTTAGGCTCTTGTTTTGATAAAATTCATCTATAGTTGGGAAAATGCGGCATGAATGATTAATGGCCAATTGTTGCAATTGCTGACCGATTTCATACAATAGAGAATTTAGATAATAGACAGGATTCTTCAGAATTTGATATTTCAGTCTGATTTCAACATTACCTAAATGTTTTAGGAGACGAACACTGTACCATGTTTAAATCTCTCAAAGATGTAGCCATGGAGAAAAATGCAGCAGTTGTTGCCCAAGAATTTGCAGTCTAGATGTTCTTTAACTATTTTTCCCCTTTTCCTTCATTTTGCTCCTCCTTAGCATTACTGATGGTGTGATAAATTAGCACAGGAGGATCTGTTGCAGCCCAAGCACATCGCACATATTGTCCTCTTTTGGCTCTCTCAAGGATATGTTGCAACTCAAGCCCATCGCTACCAGATATGGTCCTCTTTCTGCTTTTCCTTTCGGGTTTCCCCTCAAGGTTTTTAAAATGCCTCTCCAATGGAGAGGTTTCCACACCCTTATAAGAAATACTTGGTTCCCTTCTCCGACTGACATATAAAGAATGTTTTGTTCCTCTCTCCAACCGATGTGGGATCTCACAGCTAAAGTACGTTCATATTTCTCTTTCTTTTTTCATTGAATTCAGTAGATCATTCTTTTAATGTTTCACACGGTTCTATTCCAAGGATTTATAGCCTTAAAAACTAATTGAATCTTTAAGATCAAGTAAATGAACAATAGATAGATTTGATAGGAGGCACAATCAAGTTTTCTATTGGATCATGGCTGGATCAAATTATCGTAGATTCAATATTCAATATTACTTTTCTTTTGAAGTATGCTTACTACATTCTCTAAGTTACAAAAATGGATCAGAAACTCACCCAGCTATAGTAACAATTGTGATGTCCCACATTGATTGGGGAGGAAAACAAACCACCATTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACCATATCTGCTAGCGGTGGACCTGGACCGTTACAAATGGTATCAGAGCCAGACACTGGACGACCCGAAGGGGGGTAGACACGAGGTGGTGTGCCAGTAAGGACGCTGGGTCCTAAAGGGGGGTGGATTTGGGGGCGGTCCCATATCGATTGGAGGAAGGAAAGAGGGGGGTGGATTGTGATGTTCCACATTGGATGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACCATATCTGCTAGCGGTGGACCTGGACCGTTACAAATGGTATCAGAGCCAGACACTGGACGACCCGAAGGGGGGTAGACACGAGGTGGTGTGCCAGTAAGGACGCTGGGTCCTAAAGGGGGGTGGATTTGGGGGCGGTCCCATATCGATTGGAGGAAGGAAAGAGGGGGGTGGATTGTGATGTTCCACATTGGATGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTATCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAAGACAATATCTGCTAGCGATGGATCTGGGCCGTTACAGTTACACTCGTTTCAAGCTCTCAATCATCAAAATATGAGGACAAATCACAAAAGTTATTCTCAGAGCTATTATTGTGTCCCTTAAGCTAGCTGGATTGCACCAATTGGAAAATTTCCCCTACAAACAACTTCAGAGTAAAGAAGGGAAAAGGAAAGGGATGTTTACATATTTATTGACACTTATTTCCAAAGCTTTCTACAGGTTGGATGAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCCGTTGATGATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAG

mRNA sequence

ATGGACGCTCACCACGCATCTCTAGAGAGCGGCCGAGAGATTGAGCAAAGCTTCTTCCGGACCAGATCTGAGCGCAGCCTCCAAATCAAATGGTTTGTTATTGTTGATTCGTATGGAATTAATGTTGCGATTATTGGTTGTGGATGCAATTTGGTTTCATTGGAACAGAAACTTCTGGCGTTAGAAAATCAGAGAGCGGAAGTCGATTCTCAGAGGTTGGATGAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCCGTTGATGATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAG

Coding sequence (CDS)

ATGGACGCTCACCACGCATCTCTAGAGAGCGGCCGAGAGATTGAGCAAAGCTTCTTCCGGACCAGATCTGAGCGCAGCCTCCAAATCAAATGGTTTGTTATTGTTGATTCGTATGGAATTAATGTTGCGATTATTGGTTGTGGATGCAATTTGGTTTCATTGGAACAGAAACTTCTGGCGTTAGAAAATCAGAGAGCGGAAGTCGATTCTCAGAGGTTGGATGAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCCGTTGATGATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAG

Protein sequence

MDAHHASLESGREIEQSFFRTRSERSLQIKWFVIVDSYGINVAIIGCGCNLVSLEQKLLALENQRAEVDSQRLDEGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDGGSTHVHGGEGGGGGGGD

Homology

[Close]

BLAST of Cp4.1LG16g06350.1 vs. TrEMBL
Match: A0A0A0KFD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-29
Identity = 85/101 (84.16%), Postives = 89/101 (88.12%), Query Frame = 1


Query: 92  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASA 151
           SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G+  A
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63

Query: 152 AGSAAAVAAIAVTAVTMDAVDDDGGSTHVHGGEGGGGGGGD 191
           A SA AVAA+AVTAVTMDA+DDDGGSTHVHGGEGG G GGD
Sbjct: 64  A-SATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

[Close]

BLAST of Cp4.1LG16g06350.1 vs. NCBI nr
Match: gi|700191918|gb|KGN47122.1| (hypothetical protein Csa_6G188150 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 2.4e-29
Identity = 85/101 (84.16%), Postives = 89/101 (88.12%), Query Frame = 1


Query: 92  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASA 151
           SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G+  A
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63

Query: 152 AGSAAAVAAIAVTAVTMDAVDDDGGSTHVHGGEGGGGGGGD 191
           A SA AVAA+AVTAVTMDA+DDDGGSTHVHGGEGG G GGD
Sbjct: 64  A-SATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g06350.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g06350.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFD0_CUCSA	1.7e-29	84.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188150 PE=4 SV=1	[more]

BLAST of Cp4.1LG16g06350.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g06350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191918\|gb\|KGN47122.1\|	2.4e-29	84.16	hypothetical protein Csa_6G188150 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG16g06350	Cp4.1LG16g06350	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g06350.1:cds:003	Cp4.1LG16g06350.1:cds:003	CDS
Cp4.1LG16g06350.1:cds:002	Cp4.1LG16g06350.1:cds:002	CDS
Cp4.1LG16g06350.1:cds:001	Cp4.1LG16g06350.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g06350.1	Cp4.1LG16g06350.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 51..71 scor