Cp4.1LG15g06160.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g06160.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSignal recognition particle 43 kDa protein
LocationCp4.1LG15 : 6932662 .. 6933585 (+)
Sequence length924
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGACCAGTCTCTCCGCCCCAAGCAACCTCTCCCATCCCCCTCTCGGATTCCCCATCTCAATCTCCGCCGCAACTTCAAATGTTTCACACACTACGCCCTCCAAACCAATAAGCACCACGCACAACGGACTCACAAACCAGAGGACAATGAATCCCACGGCCAGGTCGATGCCATCATCGGAAGCCGAGCTCGGTCCGACGCCGCCGGGATGGAGTATCTAATCAAATGGAAAGACGGGTATTCCCCAACATGGGTCGCCTCCAATTTCATTGCTAAACACATTGTCGCAGACTACGAAGCCCCTTGGTGGATTGCTGCCAAGAAAGCCGACGAATCCGCATTAAAATCCCTCATAGACGCCGCCGACGGCCGCGATTTCGATTCCGTTGACGGAGATGGCAGAACCGCTCTGCTCTTCGTCGCTGGGCTTGGGTCAGAGCCGTGCGTGAGAATGTTAGCCGAGGTCGGTGTGAATCTCGATCACCGTGACTACTGCGGTGGGTTCACGGCGCTGCATATGGCGGCTGGGTATGTGAAACCAGGGACGGTGGAGTTGTTGGTGGATTTGGGGGCGGATCCGGAGATCGAAGATGATCAGGGTCGGACGCCGTTGGGTCTTGCAAAAGGGATACTGAAAGCCACGCCGAGGGTTCATTTCGTGAGGAGAGTGGGGCTGGAGAGAGTGATCGGAGCGGTGGAGAAGGTGTGTTTTGAGTACGCGGAGGTGGAGAAATTGCTGGGGAGAAGGGGGAAGGGAGAGGATTTGGAGTATTTGGTGAAATGGAAGGACGGAGAGGATAATGAGTGGGTGAATGTGGGGTTGATTGCGGCGGAATTGGTGGCGGATTTTGAAGCTGAGTTGGAATGCGCGGTGGCGGAGGCGGTGGTTCAGAAGAGGCTTAGGGAATGGGGACGATGA

mRNA sequence

ATGGACGACCAGTCTCTCCGCCCCAAGCAACCTCTCCCATCCCCCTCTCGGATTCCCCATCTCAATCTCCGCCGCAACTTCAAATGTTTCACACACTACGCCCTCCAAACCAATAAGCACCACGCACAACGGACTCACAAACCAGAGGACAATGAATCCCACGGCCAGGTCGATGCCATCATCGGAAGCCGAGCTCGGTCCGACGCCGCCGGGATGGAGTATCTAATCAAATGGAAAGACGGGTATTCCCCAACATGGGTCGCCTCCAATTTCATTGCTAAACACATTGTCGCAGACTACGAAGCCCCTTGGTGGATTGCTGCCAAGAAAGCCGACGAATCCGCATTAAAATCCCTCATAGACGCCGCCGACGGCCGCGATTTCGATTCCGTTGACGGAGATGGCAGAACCGCTCTGCTCTTCGTCGCTGGGCTTGGGTCAGAGCCGTGCGTGAGAATGTTAGCCGAGGTCGGTGTGAATCTCGATCACCGTGACTACTGCGGTGGGTTCACGGCGCTGCATATGGCGGCTGGGTATGTGAAACCAGGGACGGTGGAGTTGTTGGTGGATTTGGGGGCGGATCCGGAGATCGAAGATGATCAGGGTCGGACGCCGTTGGGTCTTGCAAAAGGGATACTGAAAGCCACGCCGAGGGTTCATTTCGTGAGGAGAGTGGGGCTGGAGAGAGTGATCGGAGCGGTGGAGAAGGTGTGTTTTGAGTACGCGGAGGTGGAGAAATTGCTGGGGAGAAGGGGGAAGGGAGAGGATTTGGAGTATTTGGTGAAATGGAAGGACGGAGAGGATAATGAGTGGGTGAATGTGGGGTTGATTGCGGCGGAATTGGTGGCGGATTTTGAAGCTGAGTTGGAATGCGCGGTGGCGGAGGCGGTGGTTCAGAAGAGGCTTAGGGAATGGGGACGATGA

Coding sequence (CDS)

ATGGACGACCAGTCTCTCCGCCCCAAGCAACCTCTCCCATCCCCCTCTCGGATTCCCCATCTCAATCTCCGCCGCAACTTCAAATGTTTCACACACTACGCCCTCCAAACCAATAAGCACCACGCACAACGGACTCACAAACCAGAGGACAATGAATCCCACGGCCAGGTCGATGCCATCATCGGAAGCCGAGCTCGGTCCGACGCCGCCGGGATGGAGTATCTAATCAAATGGAAAGACGGGTATTCCCCAACATGGGTCGCCTCCAATTTCATTGCTAAACACATTGTCGCAGACTACGAAGCCCCTTGGTGGATTGCTGCCAAGAAAGCCGACGAATCCGCATTAAAATCCCTCATAGACGCCGCCGACGGCCGCGATTTCGATTCCGTTGACGGAGATGGCAGAACCGCTCTGCTCTTCGTCGCTGGGCTTGGGTCAGAGCCGTGCGTGAGAATGTTAGCCGAGGTCGGTGTGAATCTCGATCACCGTGACTACTGCGGTGGGTTCACGGCGCTGCATATGGCGGCTGGGTATGTGAAACCAGGGACGGTGGAGTTGTTGGTGGATTTGGGGGCGGATCCGGAGATCGAAGATGATCAGGGTCGGACGCCGTTGGGTCTTGCAAAAGGGATACTGAAAGCCACGCCGAGGGTTCATTTCGTGAGGAGAGTGGGGCTGGAGAGAGTGATCGGAGCGGTGGAGAAGGTGTGTTTTGAGTACGCGGAGGTGGAGAAATTGCTGGGGAGAAGGGGGAAGGGAGAGGATTTGGAGTATTTGGTGAAATGGAAGGACGGAGAGGATAATGAGTGGGTGAATGTGGGGTTGATTGCGGCGGAATTGGTGGCGGATTTTGAAGCTGAGTTGGAATGCGCGGTGGCGGAGGCGGTGGTTCAGAAGAGGCTTAGGGAATGGGGACGATGA

Protein sequence

MDDQSLRPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREWGR
Homology
[Close]
BLAST of Cp4.1LG15g06160.1 vs. Swiss-Prot
Match: SR43C_ARATH (Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=2)

HSP 1 Score: 300.1 bits (767), Expect = 2.9e-80
Identity = 157/302 (51.99%), Postives = 211/302 (69.87%), Query Frame = 1 

Query: 14  SPSRIPHLNLRRNFKCFTHYALQTNKHHA-----QRTHKPEDNESHGQVDAIIGSRARSD 73
           SP  +P   +   F+     A+Q N         +     E + S+G+V+ IIGSR   +
Sbjct: 38  SPESLPIRRIELCFRGAICAAVQRNYEETTSSVEEAEEDDESSSSYGEVNKIIGSRTAGE 97

Query: 74  AAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDF 133
            A MEYLI+WKDG+SP+WV S++IA  +V++YE PWW AA+KADE AL  L++    RD 
Sbjct: 98  GA-MEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE---DRDV 157

Query: 134 DSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELL 193
           D+VD +GRTALLFVAGLGS+ CVR+LAE G +LDHRD  GG TALHMAAGYV+P  VE L
Sbjct: 158 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 217

Query: 194 VDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEKVCFEYAEVE 253
           V+LGAD E+ED++G T L LA+ ILK TP+   + F RR+GLE+VI  +E   FEYAEV+
Sbjct: 218 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVD 277

Query: 254 KLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREW 308
           +++ +RGKG+D+EYLV+WKDG D EWV    +A ++  D+E  LE AVAE+V+ KR+ + 
Sbjct: 278 EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEYAVAESVIGKRVGDD 335

[Close]
BLAST of Cp4.1LG15g06160.1 vs. Swiss-Prot
Match: SR43C_ORYSJ (Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0131900 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.9e-63
Identity = 137/320 (42.81%), Postives = 190/320 (59.38%), Query Frame = 1 

Query: 7   RPKQPLPSPSRIPHLNL---------RRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQV 66
           R K P P+  R P L++          R       +  QTN  +   +   +D+E++G+V
Sbjct: 12  RLKPPNPNAQRTPALSITVPFRLRLPNRRLTAAAVFQDQTNPRNPA-SKGGDDDEAYGEV 71

Query: 67  DAIIGSR-----------ARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWI 126
           D I+ SR           + +     EYL++WKDG+ P+W+ +  IA  +VA+YE PWW 
Sbjct: 72  DRIVSSRTIKNPVFAEDGSATTVTATEYLVEWKDGHEPSWIPAEAIAADVVAEYETPWWT 131

Query: 127 AAKKADESALKSLI-DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRD 186
           AAKKAD + + +L+ D    RD D+ D  GRTA+ F AGLGSE CVR LAE G ++   +
Sbjct: 132 AAKKADAAEITALLADETLRRDPDAEDAQGRTAMHFAAGLGSEECVRALAEAGADVGRPE 191

Query: 187 YCGG-FTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVH---F 246
             GG  T LH+A GY +P  V  L++LGA+PE  D QGRTPL L + +L  TP+ +   F
Sbjct: 192 RAGGGLTPLHIAVGYGRPAAVRALLELGAEPEAPDGQGRTPLELVQDVLAKTPKGNPATF 251

Query: 247 VRRVGLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAEL 302
            RR+ LE     +EK  +E+ EVEK++  RG+G+  EYLV+W+DG D EWV    +A +L
Sbjct: 252 ERRLALEAAAKELEKAVYEWGEVEKVVDGRGEGKWREYLVEWRDGGDREWVRAAWVAEDL 311

[Close]
BLAST of Cp4.1LG15g06160.1 vs. Swiss-Prot
Match: ANKH_ALLVD (Ankyrin homolog OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) GN=Alvin_1094 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-08
Identity = 40/100 (40.00%), Postives = 51/100 (51.00%), Query Frame = 1 

Query: 107 AAKKADESALKSLIDAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDY 166
           AA K +   L  LI+   G D ++ D  G TALL  A  G    V  LA +G  LD  D 
Sbjct: 171 AASKGETGVLPLLIEG--GADLEARDKQGATALLIAADQGQAGAVETLAGLGAQLDAVDA 230

Query: 167 CGGFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPL 207
            G  TAL +A G+     VE L+ +GADP  +D +G T L
Sbjct: 231 LGS-TALILAVGHGHVAMVERLLAMGADPNRQDRKGTTAL 267

[Close]
BLAST of Cp4.1LG15g06160.1 vs. Swiss-Prot
Match: ANR54_BOVIN (Ankyrin repeat domain-containing protein 54 OS=Bos taurus GN=ANKRD54 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-07
Identity = 52/159 (32.70%), Postives = 74/159 (46.54%), Query Frame = 1 

Query: 115 ALKSLIDAADGRDFDSV-------------DGDGRTALLFVAGLGSEPCVRMLAEVGVNL 174
           ALK L D+A+  D ++V             D  GRTAL F +  G++  V++L + G + 
Sbjct: 109 ALKRLRDSANANDVETVQQLLEEGTDPCAADDKGRTALHFASCNGNDQIVQLLLDHGADP 168

Query: 175 DHRDYCGGFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHF 234
           + RD  G  T LH+AA       +  L+  GA  +  D  GRTPL LAK  L      H 
Sbjct: 169 NQRDGLGN-TPLHLAACTNHAPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGH- 228

Query: 235 VRRVGLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYL 261
                LE V   V+++     E  + LGR  + E L+ L
Sbjct: 229 --SQCLEAVRLEVKQIIQMLREYLERLGRHEQRERLDDL 263

[Close]
BLAST of Cp4.1LG15g06160.1 vs. Swiss-Prot
Match: ANR54_RAT (Ankyrin repeat domain-containing protein 54 OS=Rattus norvegicus GN=Ankrd54 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.2e-07
Identity = 51/159 (32.08%), Postives = 74/159 (46.54%), Query Frame = 1 

Query: 115 ALKSLIDAADGRDFDSV-------------DGDGRTALLFVAGLGSEPCVRMLAEVGVNL 174
           ALK L D+A+  D ++V             D  GRTAL F +  G++  V++L + G + 
Sbjct: 109 ALKRLRDSANANDIETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADP 168

Query: 175 DHRDYCGGFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHF 234
           + +D  G  T LH+AA       +  L+  GA  +  D  GRTPL LAK  L      H 
Sbjct: 169 NQQDGLGN-TPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGH- 228

Query: 235 VRRVGLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYL 261
                LE V   V+++     E  + LGR  + E L+ L
Sbjct: 229 --SQCLEAVRLEVKQIIHMLREYLERLGRHEQRERLDDL 263

[Close]
BLAST of Cp4.1LG15g06160.1 vs. TrEMBL
Match: A0A0A0K634_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018780 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 9.4e-123
Identity = 224/302 (74.17%), Postives = 259/302 (85.76%), Query Frame = 1 

Query: 6   LRPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRA 65
           L PK PLP PS IPHLNLRRNF  FT YA+Q+++   Q+T KPED+ES+G+VD IIGSRA
Sbjct: 15  LPPKTPLPFPSPIPHLNLRRNFTHFTAYAVQSDQPITQQTQKPEDDESYGEVDGIIGSRA 74

Query: 66  RSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADG 125
             DA GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKADESALKSLID+ D 
Sbjct: 75  LPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLIDSGDE 134

Query: 126 RDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTV 185
           RDFD+VD DGRTALLFV+GLGS  CVR+LA+ GVNL+HRD  GGFTALHMAAGYVKP TV
Sbjct: 135 RDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNLNHRDNSGGFTALHMAAGYVKPETV 194

Query: 186 ELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVE 245
           ELLV+LGADPEI+D++GRT L LAK ILKATPRV F+RR+GLE+VI AVEKV +EYAEVE
Sbjct: 195 ELLVELGADPEIDDEKGRTALELAKEILKATPRVQFMRRLGLEKVIRAVEKVVYEYAEVE 254

Query: 246 KLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREW 305
           +LL +RGKGE+LEYLVKWKDGEDNEWV VGLIA +LV D+EA LE AVAEAVV KR+ + 
Sbjct: 255 ELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVGDYEAGLEYAVAEAVVGKRVGDD 314

Query: 306 GR 308
           G+
Sbjct: 315 GK 316

[Close]
BLAST of Cp4.1LG15g06160.1 vs. TrEMBL
Match: V7ADE1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G025300g PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.1e-94
Identity = 178/305 (58.36%), Postives = 223/305 (73.11%), Query Frame = 1 

Query: 5   SLRPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSR 64
           S  PK        +P  N    F+  T  A+Q  +  A    K  ++ES+G+V  IIGSR
Sbjct: 67  SSNPKHFFKQQPFLPIPNNPTRFRLVTA-AIQNQQQEAAAASKDTEDESYGEVKGIIGSR 126

Query: 65  ARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAAD 124
           A   AAGMEYLI+WKDG++P+WV ++FIAK +VA+YE PWW AAKKADESAL++L+D+ D
Sbjct: 127 ALDTAAGMEYLIEWKDGHAPSWVPADFIAKDVVAEYETPWWTAAKKADESALRNLVDSGD 186

Query: 125 GRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGT 184
           GRD D+VD DGRTALLFVAGLGSEPCV++LAE G NLDHRD  GG  ALHMAAGYV+PG 
Sbjct: 187 GRDVDAVDADGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGV 246

Query: 185 VELLVDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEKVCFEY 244
            +LL+D GADPE+ DD+GRT L LA+ ILKATP+   + F RR+GLE V+  +E   FEY
Sbjct: 247 AKLLLDFGADPEVADDRGRTALDLAREILKATPKGNPMQFGRRIGLEGVVRVLEGAVFEY 306

Query: 245 AEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKR 304
            E +++L +RGKGE+LEYLV+WKDGE NEWV    +A +LV D EA LE AVAEAV+ KR
Sbjct: 307 VEAQEILEQRGKGENLEYLVRWKDGEANEWVKAKFVAEDLVRDHEAGLEYAVAEAVLAKR 366

Query: 305 LREWG 307
           + + G
Sbjct: 367 VADEG 370

[Close]
BLAST of Cp4.1LG15g06160.1 vs. TrEMBL
Match: A0A0L9V8W8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g192600 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.4e-94
Identity = 179/294 (60.88%), Postives = 225/294 (76.53%), Query Frame = 1 

Query: 19  PHLNLRRN---FKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRARSDAAGMEYL 78
           P L +R+N   F+  T  ALQ N+   Q   K  ++ES+G+V  IIGSRA   A GMEYL
Sbjct: 31  PFLPIRQNPTRFRLVTA-ALQ-NQQQQQAASKDTEDESYGEVKGIIGSRALDAATGMEYL 90

Query: 79  IKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDFDSVDGDG 138
           I+WKDG+ P+WV ++FIAK +VA+YE PWW AAKKADE AL++L+++ADGRD D+VD +G
Sbjct: 91  IEWKDGHEPSWVPADFIAKDVVAEYETPWWTAAKKADEPALRNLLESADGRDVDAVDAEG 150

Query: 139 RTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVDLGADP 198
           RTALLFVAGLGSEPCV++LAE G NLDHRD  GG  ALHMAAGYV+PG  ++L+DLGADP
Sbjct: 151 RTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADP 210

Query: 199 EIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEKVCFEYAEVEKLLGRRG 258
           E+ DD+GRT L LA+ ILKATP+   + F RR+GLE V+  +E   FEYAEVE++L RRG
Sbjct: 211 EVADDRGRTALDLAREILKATPKGNPLQFGRRIGLEGVVRVLEGAVFEYAEVEEILERRG 270

Query: 259 KGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREWG 307
           KGE+LEYLV+WKDG  NEWV    +A +LV D+EA LE AVAEAV+ KR+ + G
Sbjct: 271 KGENLEYLVRWKDGGANEWVKAKFVAEDLVRDYEAGLEYAVAEAVLAKRIADEG 322

[Close]
BLAST of Cp4.1LG15g06160.1 vs. TrEMBL
Match: A0A0S3SE85_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G245100 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.4e-94
Identity = 179/294 (60.88%), Postives = 225/294 (76.53%), Query Frame = 1 

Query: 19  PHLNLRRN---FKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRARSDAAGMEYL 78
           P L +R+N   F+  T  ALQ N+   Q   K  ++ES+G+V  IIGSRA   A GMEYL
Sbjct: 31  PFLPIRQNPTRFRLVTA-ALQ-NQQQQQAASKDTEDESYGEVKGIIGSRALDAATGMEYL 90

Query: 79  IKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDFDSVDGDG 138
           I+WKDG+ P+WV ++FIAK +VA+YE PWW AAKKADE AL++L+++ADGRD D+VD +G
Sbjct: 91  IEWKDGHEPSWVPADFIAKDVVAEYETPWWTAAKKADEPALRNLLESADGRDVDAVDAEG 150

Query: 139 RTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVDLGADP 198
           RTALLFVAGLGSEPCV++LAE G NLDHRD  GG  ALHMAAGYV+PG  ++L+DLGADP
Sbjct: 151 RTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADP 210

Query: 199 EIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEKVCFEYAEVEKLLGRRG 258
           E+ DD+GRT L LA+ ILKATP+   + F RR+GLE V+  +E   FEYAEVE++L RRG
Sbjct: 211 EVADDRGRTALDLAREILKATPKGNPLQFGRRIGLEGVVRVLEGAVFEYAEVEEILERRG 270

Query: 259 KGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREWG 307
           KGE+LEYLV+WKDG  NEWV    +A +LV D+EA LE AVAEAV+ KR+ + G
Sbjct: 271 KGENLEYLVRWKDGGANEWVKAKFVAEDLVRDYEAGLEYAVAEAVLAKRIADEG 322

[Close]
BLAST of Cp4.1LG15g06160.1 vs. TrEMBL
Match: B9RF69_RICCO (Ankyrin repeat domain protein, putative OS=Ricinus communis GN=RCOM_1431980 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 3.2e-94
Identity = 175/302 (57.95%), Postives = 222/302 (73.51%), Query Frame = 1 

Query: 11  PLPSPSRIPHLNLRRN--FKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRARSD 70
           P  SPS   H  L+       FT +A+Q  +         +D+ES+G+V  IIGS+A  D
Sbjct: 22  PSSSPSFFSHQFLKTQPLKPSFTLFAIQNQETQNPLQPSTQDDESYGEVSKIIGSKALED 81

Query: 71  AAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDF 130
             GMEYLI+WKDG++P+WV SN+IAK ++A+YE+PWW AAKKAD +AL  L+ A D RD 
Sbjct: 82  GTGMEYLIEWKDGHTPSWVPSNYIAKDVIAEYESPWWTAAKKADHAALSELLSADDDRDV 141

Query: 131 DSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELL 190
           D+VD  GRTALLFV+GLGSEPCV++LAE G +L+HRD  GG TALHMAAGYV+PG V+LL
Sbjct: 142 DAVDSYGRTALLFVSGLGSEPCVKLLAEAGADLNHRDNSGGLTALHMAAGYVQPGIVKLL 201

Query: 191 VDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEKVCFEYAEVE 250
           ++LGADPE+EDD+G TPL LAK IL  TP+     F RR+GLE VI  + +  FEYAEV+
Sbjct: 202 IELGADPEVEDDKGLTPLALAKQILNVTPKGNPAQFARRLGLENVIRVINEEIFEYAEVQ 261

Query: 251 KLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREW 308
           +LL +RGKG+ +EYLVKWKDG DNEWV  G+I  +L+ DFEA LE AVAE V+ KR+RE 
Sbjct: 262 ELLEKRGKGDKVEYLVKWKDGSDNEWVKAGVIGEDLIRDFEAGLEYAVAEGVMGKRVRED 321

[Close]
BLAST of Cp4.1LG15g06160.1 vs. TAIR10
Match: AT2G47450.1 (AT2G47450.1 chloroplast signal recognition particle component (CAO))

HSP 1 Score: 300.1 bits (767), Expect = 1.6e-81
Identity = 157/302 (51.99%), Postives = 211/302 (69.87%), Query Frame = 1 

Query: 14  SPSRIPHLNLRRNFKCFTHYALQTNKHHA-----QRTHKPEDNESHGQVDAIIGSRARSD 73
           SP  +P   +   F+     A+Q N         +     E + S+G+V+ IIGSR   +
Sbjct: 38  SPESLPIRRIELCFRGAICAAVQRNYEETTSSVEEAEEDDESSSSYGEVNKIIGSRTAGE 97

Query: 74  AAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDF 133
            A MEYLI+WKDG+SP+WV S++IA  +V++YE PWW AA+KADE AL  L++    RD 
Sbjct: 98  GA-MEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE---DRDV 157

Query: 134 DSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELL 193
           D+VD +GRTALLFVAGLGS+ CVR+LAE G +LDHRD  GG TALHMAAGYV+P  VE L
Sbjct: 158 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 217

Query: 194 VDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEKVCFEYAEVE 253
           V+LGAD E+ED++G T L LA+ ILK TP+   + F RR+GLE+VI  +E   FEYAEV+
Sbjct: 218 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVD 277

Query: 254 KLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREW 308
           +++ +RGKG+D+EYLV+WKDG D EWV    +A ++  D+E  LE AVAE+V+ KR+ + 
Sbjct: 278 EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEYAVAESVIGKRVGDD 335

[Close]
BLAST of Cp4.1LG15g06160.1 vs. TAIR10
Match: AT3G04710.1 (AT3G04710.1 ankyrin repeat family protein)

HSP 1 Score: 48.9 bits (115), Expect = 6.5e-06
Identity = 26/76 (34.21%), Postives = 38/76 (50.00%), Query Frame = 1 

Query: 134 DGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVDLGA 193
           D  T LL     GS  C+ +L + G   +   + GG T LH+AA       +  L+  GA
Sbjct: 186 DNITPLLSAVAAGSLSCLELLVKAGAKANV--FAGGATPLHIAADIGNLELINCLLKAGA 245

Query: 194 DPEIEDDQGRTPLGLA 210
           DP  +D++G  PL +A
Sbjct: 246 DPNQKDEEGNRPLEVA 259

[Close]
BLAST of Cp4.1LG15g06160.1 vs. TAIR10
Match: AT5G66055.1 (AT5G66055.1 ankyrin repeat protein)

HSP 1 Score: 48.9 bits (115), Expect = 6.5e-06
Identity = 25/78 (32.05%), Postives = 44/78 (56.41%), Query Frame = 1 

Query: 131 VDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVD 190
           +D +G T + +     S P +++L     +++ +D   G+T LH+A    +   V+LL+ 
Sbjct: 322 LDDEGATLMHYAVQTASAPTIKLLLLYNADINAQDR-DGWTPLHVAVQARRSDIVKLLLI 381

Query: 191 LGADPEIEDDQGRTPLGL 209
            GAD E+++  G TPLGL
Sbjct: 382 KGADIEVKNKDGLTPLGL 398

[Close]
BLAST of Cp4.1LG15g06160.1 vs. NCBI nr
Match: gi|449472373|ref|XP_004153574.1| (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 448.0 bits (1151), Expect = 1.4e-122
Identity = 224/302 (74.17%), Postives = 259/302 (85.76%), Query Frame = 1 

Query: 6   LRPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRA 65
           L PK PLP PS IPHLNLRRNF  FT YA+Q+++   Q+T KPED+ES+G+VD IIGSRA
Sbjct: 15  LPPKTPLPFPSPIPHLNLRRNFTHFTAYAVQSDQPITQQTQKPEDDESYGEVDGIIGSRA 74

Query: 66  RSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADG 125
             DA GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKADESALKSLID+ D 
Sbjct: 75  LPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLIDSGDE 134

Query: 126 RDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTV 185
           RDFD+VD DGRTALLFV+GLGS  CVR+LA+ GVNL+HRD  GGFTALHMAAGYVKP TV
Sbjct: 135 RDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNLNHRDNSGGFTALHMAAGYVKPETV 194

Query: 186 ELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVE 245
           ELLV+LGADPEI+D++GRT L LAK ILKATPRV F+RR+GLE+VI AVEKV +EYAEVE
Sbjct: 195 ELLVELGADPEIDDEKGRTALELAKEILKATPRVQFMRRLGLEKVIRAVEKVVYEYAEVE 254

Query: 246 KLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREW 305
           +LL +RGKGE+LEYLVKWKDGEDNEWV VGLIA +LV D+EA LE AVAEAVV KR+ + 
Sbjct: 255 ELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVGDYEAGLEYAVAEAVVGKRVGDD 314

Query: 306 GR 308
           G+
Sbjct: 315 GK 316

[Close]
BLAST of Cp4.1LG15g06160.1 vs. NCBI nr
Match: gi|659094126|ref|XP_008447899.1| (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 448.0 bits (1151), Expect = 1.4e-122
Identity = 222/297 (74.75%), Postives = 259/297 (87.21%), Query Frame = 1 

Query: 11  PLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRARSDAA 70
           P+P PS IPHLNLRRNF  FT YA+Q+++   Q+T+KPED+ES+G+VD IIGSRA  DA 
Sbjct: 24  PIPFPSTIPHLNLRRNFTHFTAYAVQSDQPITQQTYKPEDDESYGEVDGIIGSRALPDAT 83

Query: 71  GMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDFDS 130
           GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKAD+SAL+SLID+ D RDFD+
Sbjct: 84  GMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADKSALESLIDSGDERDFDA 143

Query: 131 VDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVD 190
           VD DGRTALLFV+GLGS  CVR+LAE GVNL+HRD  GGFTALHMAAGYVKP TVELLV+
Sbjct: 144 VDEDGRTALLFVSGLGSVECVRILAEAGVNLNHRDNSGGFTALHMAAGYVKPETVELLVE 203

Query: 191 LGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVEKLLGR 250
           LGADPEIED++GRT L LAK ILKATPRV F+RR+GLE+VIGAVEKV +EYAEVE+LL +
Sbjct: 204 LGADPEIEDEKGRTALELAKEILKATPRVQFMRRLGLEKVIGAVEKVVYEYAEVEELLEK 263

Query: 251 RGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREWGR 308
           RGKGE+LEYLVKWKDGEDNEWV VGLIA +LVAD+EA LE AVAEAVV KR+ + G+
Sbjct: 264 RGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADYEAGLEYAVAEAVVGKRVGDEGK 320

[Close]
BLAST of Cp4.1LG15g06160.1 vs. NCBI nr
Match: gi|659094128|ref|XP_008447900.1| (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 448.0 bits (1151), Expect = 1.4e-122
Identity = 222/297 (74.75%), Postives = 259/297 (87.21%), Query Frame = 1 

Query: 11  PLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRARSDAA 70
           P+P PS IPHLNLRRNF  FT YA+Q+++   Q+T+KPED+ES+G+VD IIGSRA  DA 
Sbjct: 24  PIPFPSTIPHLNLRRNFTHFTAYAVQSDQPITQQTYKPEDDESYGEVDGIIGSRALPDAT 83

Query: 71  GMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDFDS 130
           GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKAD+SAL+SLID+ D RDFD+
Sbjct: 84  GMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADKSALESLIDSGDERDFDA 143

Query: 131 VDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVD 190
           VD DGRTALLFV+GLGS  CVR+LAE GVNL+HRD  GGFTALHMAAGYVKP TVELLV+
Sbjct: 144 VDEDGRTALLFVSGLGSVECVRILAEAGVNLNHRDNSGGFTALHMAAGYVKPETVELLVE 203

Query: 191 LGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVEKLLGR 250
           LGADPEIED++GRT L LAK ILKATPRV F+RR+GLE+VIGAVEKV +EYAEVE+LL +
Sbjct: 204 LGADPEIEDEKGRTALELAKEILKATPRVQFMRRLGLEKVIGAVEKVVYEYAEVEELLEK 263

Query: 251 RGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREWGR 308
           RGKGE+LEYLVKWKDGEDNEWV VGLIA +LVAD+EA LE AVAEAVV KR+ + G+
Sbjct: 264 RGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADYEAGLEYAVAEAVVGKRVGDEGK 320

[Close]
BLAST of Cp4.1LG15g06160.1 vs. NCBI nr
Match: gi|1009150816|ref|XP_015893225.1| (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 356.7 bits (914), Expect = 4.1e-95
Identity = 172/262 (65.65%), Postives = 213/262 (81.30%), Query Frame = 1 

Query: 49  EDNESHGQVDAIIGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAA 108
           ED+E +G+VD IIGSRA     GMEYLI+WKDG++P+WV+S++IAK +VA+YE PWW AA
Sbjct: 68  EDDEYYGEVDKIIGSRAAEGKTGMEYLIEWKDGHTPSWVSSDYIAKDVVAEYETPWWTAA 127

Query: 109 KKADESALKSLIDAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCG 168
           KKAD +ALK LI+A DGRD D+VD DGRTALLFV+GLGSE CVR+LAE G +LDHRD  G
Sbjct: 128 KKADHNALKRLIEADDGRDIDAVDSDGRTALLFVSGLGSEECVRVLAESGADLDHRDNSG 187

Query: 169 GFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRV 228
           G TALHMAAGYVKPG  +LL++LGADPE++DD+GRTPL LAK ILK TP+   + F RR+
Sbjct: 188 GLTALHMAAGYVKPGVAKLLMELGADPEVQDDRGRTPLDLAKEILKVTPKGNPMQFARRL 247

Query: 229 GLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADF 288
           GLE VI A+E+V FEYAEV++LL +RGKG++LEYLVKWKDG+DN WV    I  +L+ D+
Sbjct: 248 GLESVIRALEEVVFEYAEVQELLEKRGKGDNLEYLVKWKDGDDNTWVKARFIGEDLIKDY 307

Query: 289 EAELECAVAEAVVQKRLREWGR 308
           EA LE AVAE V+ KRL + G+
Sbjct: 308 EAGLEYAVAEGVLGKRLGDDGK 329

[Close]
BLAST of Cp4.1LG15g06160.1 vs. NCBI nr
Match: gi|1009150731|ref|XP_015893177.1| (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 355.5 bits (911), Expect = 9.2e-95
Identity = 171/262 (65.27%), Postives = 213/262 (81.30%), Query Frame = 1 

Query: 49  EDNESHGQVDAIIGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAA 108
           ED+E +G+VD IIGSRA     GMEYLI+WKDG++P+WV+S++IAK +VA+YE PWW AA
Sbjct: 68  EDDEYYGEVDKIIGSRAAEGKTGMEYLIEWKDGHTPSWVSSDYIAKDVVAEYETPWWTAA 127

Query: 109 KKADESALKSLIDAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCG 168
           KKAD +ALK LI+A DGRD D+VD DGRTALLFV+GLGSE CVR+LAE G +LDHR+  G
Sbjct: 128 KKADHNALKRLIEADDGRDIDAVDSDGRTALLFVSGLGSEECVRVLAEAGADLDHRNNSG 187

Query: 169 GFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRV 228
           G TALHMAAGYVKPG  +LL++LGADPE++DD+GRTPL LAK ILK TP+   + F RR+
Sbjct: 188 GLTALHMAAGYVKPGVAKLLMELGADPEVQDDRGRTPLDLAKEILKVTPKGNPMQFARRL 247

Query: 229 GLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADF 288
           GLE VI A+E+V FEYAEV++LL +RGKG++LEYLVKWKDG+DN WV    I  +L+ D+
Sbjct: 248 GLESVIRALEEVVFEYAEVQELLEKRGKGDNLEYLVKWKDGDDNTWVKARFIGEDLIKDY 307

Query: 289 EAELECAVAEAVVQKRLREWGR 308
           EA LE AVAE V+ KRL + G+
Sbjct: 308 EAGLEYAVAEGVLGKRLGDDGK 329

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g06160.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SR43C_ARATH2.9e-8051.99Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thalian... [more]
SR43C_ORYSJ1.9e-6342.81Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sati... [more]
ANKH_ALLVD2.2e-0840.00Ankyrin homolog OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 10... [more]
ANR54_BOVIN1.9e-0732.70Ankyrin repeat domain-containing protein 54 OS=Bos taurus GN=ANKRD54 PE=2 SV=1[more]
ANR54_RAT3.2e-0732.08Ankyrin repeat domain-containing protein 54 OS=Rattus norvegicus GN=Ankrd54 PE=2... [more]
BLAST of Cp4.1LG15g06160.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K634_CUCSA9.4e-12374.17Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018780 PE=4 SV=1[more]
V7ADE1_PHAVU1.1e-9458.36Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G025300g PE=4 SV=1[more]
A0A0L9V8W8_PHAAN2.4e-9460.88Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g192600 PE=4 SV=1[more]
A0A0S3SE85_PHAAN2.4e-9460.88Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G245100 PE=... [more]
B9RF69_RICCO3.2e-9457.95Ankyrin repeat domain protein, putative OS=Ricinus communis GN=RCOM_1431980 PE=4... [more]
BLAST of Cp4.1LG15g06160.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47450.11.6e-8151.99 chloroplast signal recognition particle component (CAO)[more]
AT3G04710.16.5e-0634.21 ankyrin repeat family protein[more]
AT5G66055.16.5e-0632.05 ankyrin repeat protein[more]
BLAST of Cp4.1LG15g06160.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449472373|ref|XP_004153574.1|1.4e-12274.17PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis sa... [more]
gi|659094126|ref|XP_008447899.1|1.4e-12274.75PREDICTED: signal recognition particle 43 kDa protein, chloroplastic isoform X1 ... [more]
gi|659094128|ref|XP_008447900.1|1.4e-12274.75PREDICTED: signal recognition particle 43 kDa protein, chloroplastic isoform X2 ... [more]
gi|1009150816|ref|XP_015893225.1|4.1e-9565.65PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Zizip... [more]
gi|1009150731|ref|XP_015893177.1|9.2e-9565.27PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like isofor... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0080085signal recognition particle, chloroplast targeting
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0045038protein import into chloroplast thylakoid membrane
GO:0009416response to light stimulus
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR016197Chromo-like_dom_sf
IPR002110Ankyrin_rpt
IPR000953Chromo/chromo_shadow_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045038 protein import into chloroplast thylakoid membrane
biological_process GO:0009416 response to light stimulus
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0010155 regulation of proton transport
biological_process GO:0009637 response to blue light
biological_process GO:0010218 response to far red light
biological_process GO:0010114 response to red light
biological_process GO:0009744 response to sucrose
cellular_component GO:0009507 chloroplast
cellular_component GO:0080085 signal recognition particle, chloroplast targeting
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0042802 identical protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG15g06160Cp4.1LG15g06160gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG15g06160.1:cds:001Cp4.1LG15g06160.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG15g06160.1Cp4.1LG15g06160.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 240..290
score: 8.6E-9coord: 53..105
score:
IPR000953Chromo/chromo shadow domainPROFILEPS50013CHROMO_2coord: 242..307
score: 9
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 134..163
score: 47.0coord: 168..197
score: 0.0029coord: 99..130
score: 16
IPR002110Ankyrin repeatPROFILEPS50088ANK_REPEATcoord: 168..200
score: 11.087coord: 134..166
score: 9
IPR016197Chromo domain-likeunknownSSF54160Chromo domain-likecoord: 240..288
score: 8.41E-11coord: 50..104
score: 2.7
IPR020683Ankyrin repeat-containing domainGENE3DG3DSA:1.25.40.20coord: 102..210
score: 9.4
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 106..199
score: 2.5
IPR020683Ankyrin repeat-containing domainPROFILEPS50297ANK_REP_REGIONcoord: 125..209
score: 22
IPR020683Ankyrin repeat-containing domainunknownSSF48403Ankyrin repeatcoord: 99..210
score: 1.71
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 243..288
score: 2.8E-7coord: 45..101
score: 2.
NoneNo IPR availablePANTHERPTHR24128FAMILY NOT NAMEDcoord: 8..304
score: 8.2E