Cp4.1LG11g08470.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g08470.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG11 : 6900906 .. 6901223 (-)
Sequence length318
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTTTTGGAGGCTTCTGGCATTGGAGGACGTCGGTGGAATCAGTATGAGAAGCTACACTGTGAAGGTAATGACGTGGTTAAGTGTAGACGTCGATGGATGAAGAAAACACTGAAGAGAAGCAAGAAGGGTTTTCGATTGTATCGGCTTACGAGGTCGAGGAGTTTTAGTTTGAAGGTATCGTTTTTGGTCTTGTTGTCGAGAAGAATCAGGGAGATTGTGAATAGAATGAAGGTCGAAGATGTATGTGCTAACGTCATCTTCTTCACTCAATGGGGACTTCCTACTTTGTCTTACAATTCCTCTACGAGTTAG

mRNA sequence

ATGGGTCTTTTGGAGGCTTCTGGCATTGGAGGACGTCGGTGGAATCAGTATGAGAAGCTACACTGTGAAGGTAATGACGTGGTTAAGTGTAGACGTCGATGGATGAAGAAAACACTGAAGAGAAGCAAGAAGGGTTTTCGATTGTATCGGCTTACGAGGTCGAGGAGTTTTAGTTTGAAGGTATCGTTTTTGGTCTTGTTGTCGAGAAGAATCAGGGAGATTGTGAATAGAATGAAGGTCGAAGATGTATGTGCTAACGTCATCTTCTTCACTCAATGGGGACTTCCTACTTTGTCTTACAATTCCTCTACGAGTTAG

Coding sequence (CDS)

ATGGGTCTTTTGGAGGCTTCTGGCATTGGAGGACGTCGGTGGAATCAGTATGAGAAGCTACACTGTGAAGGTAATGACGTGGTTAAGTGTAGACGTCGATGGATGAAGAAAACACTGAAGAGAAGCAAGAAGGGTTTTCGATTGTATCGGCTTACGAGGTCGAGGAGTTTTAGTTTGAAGGTATCGTTTTTGGTCTTGTTGTCGAGAAGAATCAGGGAGATTGTGAATAGAATGAAGGTCGAAGATGTATGTGCTAACGTCATCTTCTTCACTCAATGGGGACTTCCTACTTTGTCTTACAATTCCTCTACGAGTTAG

Protein sequence

MGLLEASGIGGRRWNQYEKLHCEGNDVVKCRRRWMKKTLKRSKKGFRLYRLTRSRSFSLKVSFLVLLSRRIREIVNRMKVEDVCANVIFFTQWGLPTLSYNSSTS
Homology
[Close]
BLAST of Cp4.1LG11g08470.1 vs. TrEMBL
Match: A0A0A0LJ29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G035390 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 73/105 (69.52%), Postives = 82/105 (78.10%), Query Frame = 1 

Query: 1   MGLLEASGIGGRRWN-QYEKLHCEGND--VVKCRRRWMKKTLKRSKKGFRLYRLTRSR-S 60
           M LLE +GIGGRRW   YEKL+  G++  VV  RRRW+KK LKR  KGFRLYR TR + S
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60

Query: 61  FSLKVSFLVLLSRRIREIVNRMK-VEDVCANVIFFTQWGLPTLSY 101
           F LKVSFL+ LSRRIREIV+RMK VEDVC N+IF TQWGLP LSY
Sbjct: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSY 105

[Close]
BLAST of Cp4.1LG11g08470.1 vs. TrEMBL
Match: W9R5R9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022680 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 1 

Query: 9   IGGRRWNQYEKLHCEGNDVVKCRRRWMKKTLKRSKKGFRLYRLTRSRSFSLKVSFLVLLS 68
           IG R   +YE+L      V K  R W+KKT  + K      RL+RSR  +LKV  +V+ +
Sbjct: 10  IGVRLRCRYERLSNIDEKVTKPGRCWVKKTNGKLKG----LRLSRSRKLTLKVFSVVVFT 69

Query: 69  RRI----REIVNRMKVEDVCANVIFFTQWGLPTLSYNS 103
            RI     EIVNRM ++ V  N+IF TQWGLP LS++S
Sbjct: 70  NRIARIYNEIVNRMSIDGVHPNIIFTTQWGLPVLSHSS 103

[Close]
BLAST of Cp4.1LG11g08470.1 vs. TrEMBL
Match: A0A067ER54_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044474mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-06
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 1 

Query: 9   IGGRRWNQYEKLHCEGNDVVKCRRR---------WMKKTLKRSKKGFRLYRLTRSRSFSL 68
           + GR   +YE+L CE +   K   R         W+KK   R  KG RL    RSR  +L
Sbjct: 10  VAGRVRCRYERLICEDDHQEKVMARPRSSSRKCYWVKKMNGRLIKGLRLS--PRSRKLTL 69

Query: 69  K-VSFLVLLSRRIR---EIVNRMKVEDVCANVIFFTQWGLPTLSYNS 103
           K +S +V+ S+ IR   ++++RMK++ +C N+IF  QWGLP LSY S
Sbjct: 70  KALSAVVVPSKIIRMYADVLDRMKMDGLCPNLIFSAQWGLPVLSYPS 114

[Close]
BLAST of Cp4.1LG11g08470.1 vs. NCBI nr
Match: gi|700205920|gb|KGN61039.1| (hypothetical protein Csa_2G035390 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-26
Identity = 73/105 (69.52%), Postives = 82/105 (78.10%), Query Frame = 1 

Query: 1   MGLLEASGIGGRRWN-QYEKLHCEGND--VVKCRRRWMKKTLKRSKKGFRLYRLTRSR-S 60
           M LLE +GIGGRRW   YEKL+  G++  VV  RRRW+KK LKR  KGFRLYR TR + S
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60

Query: 61  FSLKVSFLVLLSRRIREIVNRMK-VEDVCANVIFFTQWGLPTLSY 101
           F LKVSFL+ LSRRIREIV+RMK VEDVC N+IF TQWGLP LSY
Sbjct: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSY 105

[Close]
BLAST of Cp4.1LG11g08470.1 vs. NCBI nr
Match: gi|703093441|ref|XP_010094930.1| (hypothetical protein L484_022680 [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 1 

Query: 9   IGGRRWNQYEKLHCEGNDVVKCRRRWMKKTLKRSKKGFRLYRLTRSRSFSLKVSFLVLLS 68
           IG R   +YE+L      V K  R W+KKT  + K      RL+RSR  +LKV  +V+ +
Sbjct: 10  IGVRLRCRYERLSNIDEKVTKPGRCWVKKTNGKLKG----LRLSRSRKLTLKVFSVVVFT 69

Query: 69  RRI----REIVNRMKVEDVCANVIFFTQWGLPTLSYNS 103
            RI     EIVNRM ++ V  N+IF TQWGLP LS++S
Sbjct: 70  NRIARIYNEIVNRMSIDGVHPNIIFTTQWGLPVLSHSS 103

[Close]
BLAST of Cp4.1LG11g08470.1 vs. NCBI nr
Match: gi|1009116446|ref|XP_015874776.1| (PREDICTED: uncharacterized protein LOC107411665 [Ziziphus jujuba])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 1 

Query: 9   IGGRRWNQYEKLHCEGNDVVKC----RRRWMKKTLKRSKKGFRLYRLTRSRSFSLKVSFL 68
           + GR   +YEKL    N + K     RR W+KK   R K      RL+RSR  +LKV  +
Sbjct: 7   VEGRIRYRYEKLSSNMN-IEKVASPGRRHWVKKMNGRLKG----LRLSRSRRLTLKVFSV 66

Query: 69  VLLSRRI----REIVNRMKVEDVCANVIFFTQWGLPTLSYNS 103
           V+LS RI     ++VNRMK+E  C  +IF TQWGLP LS+ S
Sbjct: 67  VVLSSRIGRIYTKVVNRMKIEGGCPAIIFSTQWGLPVLSHPS 103

[Close]
BLAST of Cp4.1LG11g08470.1 vs. NCBI nr
Match: gi|641837406|gb|KDO56360.1| (hypothetical protein CISIN_1g044474mg [Citrus sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-06
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 1 

Query: 9   IGGRRWNQYEKLHCEGNDVVKCRRR---------WMKKTLKRSKKGFRLYRLTRSRSFSL 68
           + GR   +YE+L CE +   K   R         W+KK   R  KG RL    RSR  +L
Sbjct: 10  VAGRVRCRYERLICEDDHQEKVMARPRSSSRKCYWVKKMNGRLIKGLRLS--PRSRKLTL 69

Query: 69  K-VSFLVLLSRRIR---EIVNRMKVEDVCANVIFFTQWGLPTLSYNS 103
           K +S +V+ S+ IR   ++++RMK++ +C N+IF  QWGLP LSY S
Sbjct: 70  KALSAVVVPSKIIRMYADVLDRMKMDGLCPNLIFSAQWGLPVLSYPS 114

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g08470.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g08470.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ29_CUCSA1.6e-2669.52Uncharacterized protein OS=Cucumis sativus GN=Csa_2G035390 PE=4 SV=1[more]
W9R5R9_9ROSA1.0e-0744.90Uncharacterized protein OS=Morus notabilis GN=L484_022680 PE=4 SV=1[more]
A0A067ER54_CITSI5.5e-0640.19Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044474mg PE=4 SV=1[more]
BLAST of Cp4.1LG11g08470.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g08470.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205920|gb|KGN61039.1|2.4e-2669.52hypothetical protein Csa_2G035390 [Cucumis sativus][more]
gi|703093441|ref|XP_010094930.1|1.4e-0744.90hypothetical protein L484_022680 [Morus notabilis][more]
gi|1009116446|ref|XP_015874776.1|1.2e-0645.10PREDICTED: uncharacterized protein LOC107411665 [Ziziphus jujuba][more]
gi|641837406|gb|KDO56360.1|7.9e-0640.19hypothetical protein CISIN_1g044474mg [Citrus sinensis][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG11g08470Cp4.1LG11g08470gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG11g08470.1:cds:001Cp4.1LG11g08470.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG11g08470.1Cp4.1LG11g08470.1-proteinpolypeptide