Cp4.1LG08g08890.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCAAGCCAGATCCCGCGGAGCAAACAATCGCTGATAATAAAAGGCGGAACAAAAATTAAAACCTCCGTTCGACTCTTCCACTGCCACCCGTCGCATTCTGGCATTTATCTCTTCTCCATTTCCTTGATTTTTGGGATCTGAAAAATCGCCATGAATCGCCACAACGATCCCAATCCATTCGATGAAGAAGAGGTCAATCCATTCTCGGTAAGTTTCTATTTCTGTCGTGGCTAAATCTCCGCTCATATAGATCTATGTGCACTGTTTCTCGTTTTTGTTTCATGTTTTACGCGATTTTTATTCGGCTAATGTCGAGATCGGGCGGTTTTTCTATTTTTGAGGTTTGGGAGGGGGTGGAGGGTGAGGGATGGTTGTTGGATTGTTCTTTTATCTGGATCTGATGGAGATCTTTCTAAATTTGGAGGAATATTGTTAGTTTATGGCTGCGGAGAAATATCGTGGTGGAATTGTAGGAGTGGTGTGGAACAGGTGAAGAATTGAGTAGAAATTTCGTGTTTGAAATTTGAATAATACTAAAAGTAGACATACGGAACTAGTAGTTGTGTTGGAGTACGGATGGAGGCGATTTCATTATCTAGGATTGGAAACGAGCGTCATTACAATCTGATTTTCGTGTTTGTGTGGGATTGTTCGTTGAATATAAATTAACTGAAAGCAACGTTCTGTTGATTATTGAAAATACTCTACTGATTGACGTACTTTTTACTCACCTGTAACATCTGATATCTGTAAAATGAAGCAAGCTGAATCTTAGGAGGATTGAAATGATAATAATATCATCTGTTGTTACTGGTTTTGACCTTTGCAGAAAGGTGGTTCTGCTCCTGGATCAAAGTTTCGAATCCCACAAGTGGTGTCGGAAACTCTGGGCTTTGGCCAGAAGCATGATGCTACTGTGGACATACCACTGGATAGGATGAATGTAATTAATATCGTACTCTGTTTTTTCTTGCTTAGAGTCTTTTTTGTCTGGAAGAAGCTTGTAAATGTAATGTTACATTTGGTTTGTGTAGGATCCGAAGACGAAGGAGCGAGAGCTTGCTGCTTGGGAAGCAGAACTTAGTAGGAAAGAAAAGGTTGTTCTATGATATACATAATTTTTTGTTTGCGTGACAATGGTGTACTACAGCTTGGTCCATAACTTGACAATATATCAATACATTTTTCGTAATTGTTCACCTACCTATTTCTTTATGCAAGTTGATTTTGTTTTCTTTGATTTTCATCCGCACACTAAATTTATTCCACAGCTATTTCTTATTTGATATATATATTTTTATCAGCCGCCCAATAAAAGACTACAACAAAATATGATATTTTGTTATTGTGTAGTGGTTACCTAACTGTTGTCATGCTTCTTTTTTTTACCAGGAAATCAAAAAGAGGGAAGAAGCTGTTTCTAAAGGTGATTAAAAAAATGCTACAAGCAATGACATTGAATATTGTTTACTTTTGTTTTTATGAAGCTATTGGGTCTATAACTTTTTGTATGTTGAACAGCTGGTGTCCCTGCTGATGATAGAAACTGGCCTCCATTTTTTCCCATTATTCATCATGATATAGCTAATGAAATACCAGTACATGCTCAGAAGTTACAGTACTTAGCCTTTGCTAGCTGGCTAGGTATGCAAAGTTAATTATCTCAATTCATCATCACATGACATCTCATCTTATAATTATTTTTTTGTATTAATGGAAGGGAAATCGTTTTTTCTTAAATCTTTTTTTTTTTTAAATGAGGTTTTTAATTATTATTTATTTATGCACTGTATTTGAGATGGTAATTGCCATAAATGCCCTTTATAAGCTGTGATAACCGTATCATCATTTGGTCAATTTCCTTATCATTACCAAATCTAGCCACCTATTTGAGATGGTAATGTATGTTGACTATAGAGACTCATTTCCATGCTTTAGTGTTAGCCTTGTCTTCAATGACTTCCGTGTGCCACACTTCATATTTTGCAGGCCACTCCCAATCTAACGCGCACTTGTGCACCTTGCACCTCATGCAACTAAGTGGTGTACATTTTTTTTAACAGCCCAATATTTTTTCCTTGTTACTTTCAAAACTGCTCTTTTCAGGTTTTCTTTTCCCATCCCAGCTTGTTATCATGGGCAAAATACCCCCCTCTCCCCCTCTCTTTTCTGTTATCGTATATACTTTATATCCAAATATTTAGTTTAAACATTCTTGCAAGAGTGGCTTTTCTATGTGTATATGATGTTCTTCACCTCACTCTAGTTCTTGCTTCAGTTAGCACTTGATCGTTGACATTTTCTTAAGCGTATGTCATGCAACATAGTTATTTTTAAGTCTACATTTTTATCCTTTGCTGCTTTTGCAGGTATAGTGTTGTGTTTGGTCTTCAACGTTGTTGCTATAACTGTCAATTGGATAAGAGGCGGGGGTAATTACTTTACTATCAATTTTTGCTTTTGTGTAATGGTTTTTACCTTAAGCTGCAACTGGTTCTTATGTTTTATTTTTATTGTTGTCACAACTTGCAGGAGTGATAATCTTTTTCCTCGCTGTAATATATTCCATACTTGGGATTCCTCTTTCATATGTCCTGTGGTACAGGCCTCTATACCGTGCTATGAGGTGAGATTGAATAATCTTTATATTTCCTTTATTCGTTGTCATTGGGTTAAGAGGCTTCTTTTGTTATATTATTGTTTAATAACCTAAGATGCTATTTTTATATTTGCTCGTTGTCATTGTATCCATAGACAATTTGCTGAATGCTGATGGTATTTTGCGTTGCCCATTGTATTTAACTTGCAGGACGGATAGTGCCTTGAAGTTTGGTTGGTTCTTCATGTTCTACTTGGTATGAATAGTAAATAATATCTTTCTTTCTCAAGATAAAGATCTTTTATATCCCTTATTTTATTTAGTAGTCAATTAACTGAGTTTCCACCACTGTACAGTTACATATCTTATTTTGCATTTTTGCTGCCATTGCGCCTCCGGTTGTGTTTCACGGGCAGTCATTGACGTAAGTTTATTGCTGATTAATTTCATTTGTAAGCTTCTAATATGCTTCAACTTTAAAATGTTCATGAAATGAATTCTCATTCTACTGCCTACAAACGTAGTAGCCCCTTTTATTATTTTTGTTGCGCCTTATTGCTTCTCCATACTGCTTGCATTGTGCTAAACATATGTCCAAATATTTTCAGGGGCATCTTAGCAGCAATTGACGTCTTCTCTGAGCATGTCTTGGTTGGGGTAAGTTTTGAATAGATAAGAACATACAACTACAAATTTCTTTATCTAAAAAGAGAATTAGAATAGTGAACATACAAATTGGGGTGCATGTTTTTAATGCTTATGCTCTTTAAACTGATGTACCAATAGAATCATTATTATTATTAACGCTTATGCTATTCCCAAGTTTGACTAACATTAAATTCGTATTATATCTTGCAGATATTCTACTTAATTGGATTTGGCTTTTTCTGCTTGGAATCGCTTCTTAGTTTGTGGGTCCTTCAGGTTAGAACACGAGCATCTTTATTATAATTCTAAACCAAATTTCAAACACAAAATCAAGCTTTTTCCCAAAATTTGCTTGGTTTTAATGATTTAAAGTTTTAGAGCTTAACTGTTCAACTCAATATAATTGGATTAATATGCCATGCATCATCTCATAGTCTTGTATTACAGTTCCAAGCAACGATTTAAACCTTCTAAGCATTTACAAGTTTACAAATTTGTAGAGAATGTTCATCTGTATCTTACTAGTTTTAAACTCTCTTTTTTGGCAGAAAATCTATTTGTACTTTAGGGGAAACAAGTGACTTGAGTGAAGAGATTACGCCACGGTTGCGACGTCGCAGCGGTTAAATTTTCAGGTTATCATTTCTTGTGATGGTGATTGTATTTTTAGGATGTTGGTGATTTTTTTAAATGAGCTGAGAGTGAGAGATGTGGATTCTAAAGTTGATACTGTTGATGTGATATAAATATATAGTTTTGTGCCAATTTGTTATTGTATTTTAGCATATGGTCGTTCTTAGGATGTGGAAAATTATAATTTAGCTGTCACAATCGGTTATTAGAAAAATATAGTTTTTGGTTTGTCATACGACAAGCCTTTAACT CCAAGCCAGATCCCGCGGAGCAAACAATCGCTGATAATAAAAGGCGGAACAAAAATTAAAACCTCCGTTCGACTCTTCCACTGCCACCCGTCGCATTCTGGCATTTATCTCTTCTCCATTTCCTTGATTTTTGGGATCTGAAAAATCGCCATGAATCGCCACAACGATCCCAATCCATTCGATGAAGAAGAGGTCAATCCATTCTCGAAAGGTGGTTCTGCTCCTGGATCAAAGTTTCGAATCCCACAAGTGGTGTCGGAAACTCTGGGCTTTGGCCAGAAGCATGATGCTACTGTGGACATACCACTGGATAGGATGAATGATCCGAAGACGAAGGAGCGAGAGCTTGCTGCTTGGGAAGCAGAACTTAGTAGGAAAGAAAAGGAAATCAAAAAGAGGGAAGAAGCTGTTTCTAAAGCTGGTGTCCCTGCTGATGATAGAAACTGGCCTCCATTTTTTCCCATTATTCATCATGATATAGCTAATGAAATACCAGTACATGCTCAGAAGTTACAGTACTTAGCCTTTGCTAGCTGGCTAGGTATAGTGTTGTGTTTGGTCTTCAACGTTGTTGCTATAACTGTCAATTGGATAAGAGGCGGGGGAGTGATAATCTTTTTCCTCGCTGTAATATATTCCATACTTGGGATTCCTCTTTCATATGTCCTGTGGTACAGGCCTCTATACCGTGCTATGAGGACGGATAGTGCCTTGAAGTTTGGTTGGTTCTTCATGTTCTACTTGTTACATATCTTATTTTGCATTTTTGCTGCCATTGCGCCTCCGGTTGTGTTTCACGGGCAGTCATTGACGGGCATCTTAGCAGCAATTGACGTCTTCTCTGAGCATGTCTTGGTTGGGATATTCTACTTAATTGGATTTGGCTTTTTCTGCTTGGAATCGCTTCTTAGTTTGTGGGTCCTTCAGAAAATCTATTTGTACTTTAGGGGAAACAAGTGACTTGAGTGAAGAGATTACGCCACGGTTGCGACGTCGCAGCGGTTAAATTTTCAGGTTATCATTTCTTGTGATGGTGATTGTATTTTTAGGATGTTGGTGATTTTTTTAAATGAGCTGAGAGTGAGAGATGTGGATTCTAAAGTTGATACTGTTGATGTGATATAAATATATAGTTTTGTGCCAATTTGTTATTGTATTTTAGCATATGGTCGTTCTTAGGATGTGGAAAATTATAATTTAGCTGTCACAATCGGTTATTAGAAAAATATAGTTTTTGGTTTGTCATACGACAAGCCTTTAACT ATGAATCGCCACAACGATCCCAATCCATTCGATGAAGAAGAGGTCAATCCATTCTCGAAAGGTGGTTCTGCTCCTGGATCAAAGTTTCGAATCCCACAAGTGGTGTCGGAAACTCTGGGCTTTGGCCAGAAGCATGATGCTACTGTGGACATACCACTGGATAGGATGAATGATCCGAAGACGAAGGAGCGAGAGCTTGCTGCTTGGGAAGCAGAACTTAGTAGGAAAGAAAAGGAAATCAAAAAGAGGGAAGAAGCTGTTTCTAAAGCTGGTGTCCCTGCTGATGATAGAAACTGGCCTCCATTTTTTCCCATTATTCATCATGATATAGCTAATGAAATACCAGTACATGCTCAGAAGTTACAGTACTTAGCCTTTGCTAGCTGGCTAGGTATAGTGTTGTGTTTGGTCTTCAACGTTGTTGCTATAACTGTCAATTGGATAAGAGGCGGGGGAGTGATAATCTTTTTCCTCGCTGTAATATATTCCATACTTGGGATTCCTCTTTCATATGTCCTGTGGTACAGGCCTCTATACCGTGCTATGAGGACGGATAGTGCCTTGAAGTTTGGTTGGTTCTTCATGTTCTACTTGTTACATATCTTATTTTGCATTTTTGCTGCCATTGCGCCTCCGGTTGTGTTTCACGGGCAGTCATTGACGGGCATCTTAGCAGCAATTGACGTCTTCTCTGAGCATGTCTTGGTTGGGATATTCTACTTAATTGGATTTGGCTTTTTCTGCTTGGAATCGCTTCTTAGTTTGTGGGTCCTTCAGAAAATCTATTTGTACTTTAGGGGAAACAAGTGA MNRHNDPNPFDEEEVNPFSKGGSAPGSKFRIPQVVSETLGFGQKHDATVDIPLDRMNDPKTKERELAAWEAELSRKEKEIKKREEAVSKAGVPADDRNWPPFFPIIHHDIANEIPVHAQKLQYLAFASWLGIVLCLVFNVVAITVNWIRGGGVIIFFLAVIYSILGIPLSYVLWYRPLYRAMRTDSALKFGWFFMFYLLHILFCIFAAIAPPVVFHGQSLTGILAAIDVFSEHVLVGIFYLIGFGFFCLESLLSLWVLQKIYLYFRGNK
BLAST of Cp4.1LG08g08890.1 vs. Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 2.3e-110 Identity = 203/271 (74.91%), Postives = 227/271 (83.76%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 5.9e-98 Identity = 179/272 (65.81%), Postives = 218/272 (80.15%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 1.5e-96 Identity = 178/281 (63.35%), Postives = 215/281 (76.51%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 2.0e-90 Identity = 165/267 (61.80%), Postives = 211/267 (79.03%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 7.8e-90 Identity = 161/263 (61.22%), Postives = 208/263 (79.09%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. TrEMBL
Match: A0A0A0L3U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006700 PE=4 SV=1) HSP 1 Score: 516.2 bits (1328), Expect = 2.5e-143 Identity = 259/269 (96.28%), Postives = 262/269 (97.40%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. TrEMBL
Match: C6TC38_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G210800 PE=2 SV=1) HSP 1 Score: 468.0 bits (1203), Expect = 7.7e-129 Identity = 229/269 (85.13%), Postives = 250/269 (92.94%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. TrEMBL
Match: A0A0B2S561_GLYSO (Secretory carrier-associated membrane protein 4 OS=Glycine soja GN=glysoja_000903 PE=4 SV=1) HSP 1 Score: 461.1 bits (1185), Expect = 9.4e-127 Identity = 226/269 (84.01%), Postives = 249/269 (92.57%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. TrEMBL
Match: C6TGL4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G010300 PE=2 SV=1) HSP 1 Score: 461.1 bits (1185), Expect = 9.4e-127 Identity = 226/269 (84.01%), Postives = 249/269 (92.57%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. TrEMBL
Match: I3SNS8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 456.8 bits (1174), Expect = 1.8e-125 Identity = 223/269 (82.90%), Postives = 250/269 (92.94%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. TAIR10
Match: AT1G32050.1 (AT1G32050.1 SCAMP family protein) HSP 1 Score: 399.8 bits (1026), Expect = 1.3e-111 Identity = 203/271 (74.91%), Postives = 227/271 (83.76%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. TAIR10
Match: AT1G61250.1 (AT1G61250.1 secretory carrier 3) HSP 1 Score: 329.3 bits (843), Expect = 2.2e-90 Identity = 166/271 (61.25%), Postives = 214/271 (78.97%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. TAIR10
Match: AT2G20840.1 (AT2G20840.1 Secretory carrier membrane protein (SCAMP) family protein) HSP 1 Score: 326.6 bits (836), Expect = 1.4e-89 Identity = 157/268 (58.58%), Postives = 213/268 (79.48%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. TAIR10
Match: AT1G11180.2 (AT1G11180.2 Secretory carrier membrane protein (SCAMP) family protein) HSP 1 Score: 308.1 bits (788), Expect = 5.2e-84 Identity = 160/287 (55.75%), Postives = 209/287 (72.82%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. TAIR10
Match: AT1G03550.1 (AT1G03550.1 Secretory carrier membrane protein (SCAMP) family protein) HSP 1 Score: 302.4 bits (773), Expect = 2.8e-82 Identity = 153/269 (56.88%), Postives = 202/269 (75.09%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. NCBI nr
Match: gi|449456749|ref|XP_004146111.1| (PREDICTED: secretory carrier-associated membrane protein 4 [Cucumis sativus]) HSP 1 Score: 516.2 bits (1328), Expect = 3.6e-143 Identity = 259/269 (96.28%), Postives = 262/269 (97.40%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. NCBI nr
Match: gi|659095511|ref|XP_008448620.1| (PREDICTED: secretory carrier-associated membrane protein 4 [Cucumis melo]) HSP 1 Score: 513.5 bits (1321), Expect = 2.3e-142 Identity = 256/269 (95.17%), Postives = 262/269 (97.40%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. NCBI nr
Match: gi|359806482|ref|NP_001241252.1| (uncharacterized protein LOC100806586 [Glycine max]) HSP 1 Score: 468.0 bits (1203), Expect = 1.1e-128 Identity = 229/269 (85.13%), Postives = 250/269 (92.94%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. NCBI nr
Match: gi|359806258|ref|NP_001241214.1| (uncharacterized protein LOC100780723 [Glycine max]) HSP 1 Score: 461.1 bits (1185), Expect = 1.4e-126 Identity = 226/269 (84.01%), Postives = 249/269 (92.57%), Query Frame = 1
BLAST of Cp4.1LG08g08890.1 vs. NCBI nr
Match: gi|388507708|gb|AFK41920.1| (unknown [Lotus japonicus]) HSP 1 Score: 456.8 bits (1174), Expect = 2.6e-125 Identity = 223/269 (82.90%), Postives = 250/269 (92.94%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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