Cp4.1LG07g09720.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTGAGCATAATAATAGTATTGCAATATCACAAATATTTTTCAAAATTAACCATAAATTTCGAGCTAATTACATTTTGATCCATAAATTTGTTATTTATTTTCACTTAACAAATTTACGTATTTCCTTGCAATGTAAACATGCCTAACGCAAAAAATTCTCCCATTGCGGCGGCTTCTACTCCTTCAAGCAATCGCCCATCAGGCAGAGGTGATCGCTTTCATAATCGCTATCAATAATTTTTTAAATCCATTTTTTGGGTTGATTCTTGTCAAATGCAGATGGGTTTCGATTCTCGTGTTCATCTTTGCATTCCAACATTCATTCGTGTTCATCTTTGGGTTTCTCGTTGATGTTTGATTTTCATGAGATTATCTGTTTTTTGATCGTGTTTCTTCTGGGTGTAATGTGATTCTCAGATTTGAGGTGTTATGGGTCTGTGATGATATATACATATATGTTTTTGCACGATTTCGAGGCGTTTAATGTTGCATTGTGTACTCTGTTCTTGGCTGGACAATATTATGTCATCTTCGTTAGATTTGTTCATTTTGGTGTTCAGCAGACGTATTGAACTGATACTCAACGTGGGATTGACACCAAATTAGTTCAAGAGATTGCATCCTATGTGAATTTGTACTATTAGTTTTGCTTTAGGTATTTTTTTTTTAATAGCTAAGGTGTCGGGACCTCAGTTCTTGTATTATGTGTTAGGAACCACGACTCTCCATAATTGTATGATATTGACCACTTTGAGCATAAGCTCTCGTGGCTTTACTTTTGGTTTCTCTAATAGGTCTCATACCAATGGAGATGTATTCCTTACTTATAAACTCATGATCAACCCCTTAATTAGCCAATAAGGACTCCTCTCCTAACGATCCTCAACGTTATGCTCATGGCCTATCCCACTAATCTCTGGGAAGCTTTGCTTGCCTCAGAGCACCCTATAAAGAGGGAGGAGATTTCGTAGTGATTACGTTTTCAATTTGGGGCTTTGTAACAGTTCAAACCCACTAGCAAATATTGTTCGCTTTGACCCGTTATGTATCACTTTCAGCCTCACGGTTTTAAAACACGTCTACTAGAGAGAGATTTCCATACTCTTATAAGGAATGCTTTGTTTCCCTCTCCAATTGATGTGGGATCTTAGATGCTTGATCCTTGAACGTTGAACCTTCCCTTTGATAACCATTTATAATGCTTGGATGAAGTTTTCTACTTACCCTTTAACCGTTCGCTTTGATGAGAGTTAGAAATGTCGAGTTGATTAACTCGACAATGAAGTAGGAATACTTTAGAAACGATGAGAGAACTTTCATGAAGCTGCCTTGACTTCCATTAGGAATCAGGATCTTTGTTCAAGTGGAAACTAACTCCTTTGAAGGGATCAAATTTGTAGTTCATCCTTTTGGTTGAATCATGTGGCTCGGTTCAGTGTCATCCTTTACATTTGTTGGTAACAATTTGCTTGTTCTTATGGGTTATGATTCTTATAAATTTTGGATGACTAAAGATGCAATAAAAGCTCATGATACTAAATGTTTTGATTCATGATGCAAACATAATCATGGAATGGCATTTTGATGATCCCTAAGGGGTTCTAATGTTTAATCTGTCTCTTGTAGCTCTGTATTTAACTCTTTGTTATTCGGCGCTCGATACTAAAACGTTGCATTAATAGTTAAACAAGTTATGACAGTTCTTTTATGATGATCAGGAAGCATACTCCCGTAAGCATCGTCGTTAAGAATATCGTCAATGTCAGATTTTTTATTACTCTGTTTGTGATTGATTTGCATTCCTGACGTTTCATTTAGTAGCTTTTTGTTGTTCATCAGTATGTTGTGTTATAACAACTTAGAGCTCATATATGAGACTGCCATCATCAATTGCTAGCTTGATTGAGGCTTCCTTGATCAATTTTCATACTTAGACCTCATCTTGAGTAACAGCTGAAGCCCATTGCTAGCAGATATTGTGCTCTTTGGGCGTTCCCTTATGGGCTTCCCCTCAAGGTTTTAAAACGAGTCTATTAGGAAGAGGTTTTGACACTCTTATAAGGAATGTTTTGTTATCCTTTCCAACCGATGTGGGATCTTGCAATCCACCCCCTTGGTGGCCCATCTGGGCTTCCCCTCAAGGTTTTAAAACGAGTCTGTTAGGGAGAGGTTTTCACACTCTTATAAGAATGTTTTGTTATCCTTTCCAACCGATGTGAGATCTTGCAATCCACCCCCTTTGGTGGCCCAACGTCATTGCTGGCACATTGTCCGATGTCTGCCTCTGATACCATTTGTAACAGCCCACATCGGTTGGAGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAATCTCTCCCTAATGGACGCGTTTTAAAATCTTAAGGGAAGCTCATAAGGGAAAGCCCAAACAAGGGAATATCTGCTGGCGGTGTACTTGGGCGGTTAGCTATGAAGCTTTTAATCTTTTGATCTTCTATTTATTTCTGAACTTCCACATTCCAGTTGAATTCATTGCATATATCTGTGGCTGTCATATGTGAAATGCAGTACATCTTAACTTGATAGCAAATGAATATGTATAGGCTATAATGGACGCTTCTCCAGATTTAGAGGGAGGAAAATGGTTAGTGATAGTATTCATTCAGCTTTGGCATGTGATGACATCCTCACCGAAATCCTCCTTCGTTTACCGGAGAAACATGTTTTCAAATTTATACTCGTGTCGAAAAAATGGCTATACCTGATCTGTGATTTACCTTTCCGACGTTGTTACGAGATGCAATGGGGCACACACACTCGTCTTTTTGGCTTTTTTGTATGCAATCTTCTTTACATTGACAGACCACAAGGCGGGTTGAGGCGCCCTCGGTACGAGCCTGCTCTACCTCTACTTTCAACATGTAAAGAAGGTGATGATTTAATGTCATCTGGATTCTTAAGGAAGCTAGGCTATTTTATTGACTACTCTGATGGCCTTGTGCTCTGTGGCCGACATCCTAAGAATTATTATGTCTGGAATTCTGTATCGAAGTATCGATGCCTTCTTCCTCAACCTCGAAAGCATTATAAATGTCTATGTATCGCGTTCATCACTGAAAACCGTGGTGAAGCTGACGGAGATATGGTATATAGAATCGTTCGGGCGAGCTGTGAATGCAAAGTTGATGTTATTAACACCATCTCTATAGAGACTTTCTCCTCAATGACTTGGACATGGAAGCAATCAACTCTTGTTTGTTCTTCATATTTTTCTTTGAGTCCATGGATGGTGGGAACCGTGATCGACCGAGTTATATACTGGTTCGGAACGTATCGAAGCTTAGCCATTTATGATCCGGGATTCGGAGAAAGGAGCATAAACTCGATCAAGCTACCGGTTGGTCAGCTGACTTATGACTATGAGGACTCCATTTTAGGAGAGTCATCTGATGGGCTTTTGCAGTATGGTCAAAGTGGAAAGATGGGGTTGGAGATATGGATTCTGCACAAGGAGCAAGCTACCGTTACCGATCGATACGAGTACCGGTGGACGTTACGACACAGACTGAGCTGCAAAGAGATGTCGAAACAGAACCCGAATTCAGGTATTCGTACTAAAGAACCTCAAGTATTATCGTTCATTTGTCGAGACTCGGAATCTGTTTTCATTAGATTGGGATCGAACATCTACCTTTGTAATATCAGAAGCAAAACACTGGCTGTGATTCCTTACCACTGTGATGGTGTTTCTATCCCATGGGATTCTTGTAAAGTGGTGCCTTTCTTTCAGAAGATATGGCCTTATTCCCCTTTCCCTGACCCCTCGAACACTTTTAATAATTGATATCAACCATGAGATGCCTGTTGTTCTGTTGC ATGGGCTATAATGGACGCTTCTCCAGATTTAGAGGGAGGAAAATGGTTAGTGATAGTATTCATTCAGCTTTGGCATGTGATGACATCCTCACCGAAATCCTCCTTCGTTTACCGGAGAAACATGTTTTCAAATTTATACTCGTGTCGAAAAAATGGCTATACCTGATCTGTGATTTACCTTTCCGACGTTGTTACGAGATGCAATGGGGCACACACACTCGTCTTTTTGGCTTTTTTGTATGCAATCTTCTTTACATTGACAGACCACAAGGCGGGTTGAGGCGCCCTCGGTACGAGCCTGCTCTACCTCTACTTTCAACATGTAAAGAAGGTGATGATTTAATGTCATCTGGATTCTTAAGGAAGCTAGGCTATTTTATTGACTACTCTGATGGCCTTGTGCTCTGTGGCCGACATCCTAAGAATTATTATGTCTGGAATTCTGTATCGAAGTATCGATGCCTTCTTCCTCAACCTCGAAAGCATTATAAATGTCTATGTATCGCGTTCATCACTGAAAACCGTGGTGAAGCTGACGGAGATATGGTATATAGAATCGTTCGGGCGAGCTGTGAATGCAAAGTTGATGTTATTAACACCATCTCTATAGAGACTTTCTCCTCAATGACTTGGACATGGAAGCAATCAACTCTTGTTTGTTCTTCATATTTTTCTTTGAGTCCATGGATGGTGGGAACCGTGATCGACCGAGTTATATACTGGTTCGGAACGTATCGAAGCTTAGCCATTTATGATCCGGGATTCGGAGAAAGGAGCATAAACTCGATCAAGCTACCGGTTGGTCAGCTGACTTATGACTATGAGGACTCCATTTTAGGAGAGTCATCTGATGGGCTTTTGCAGTATGGTCAAAGTGGAAAGATGGGGTTGGAGATATGGATTCTGCACAAGGAGCAAGCTACCGTTACCGATCGATACGAGTACCGGTGGACGTTACGACACAGACTGAGCTGCAAAGAGATGTCGAAACAGAACCCGAATTCAGGTATTCGTACTAAAGAACCTCAAGTATTATCGTTCATTTGTCGAGACTCGGAATCTGTTTTCATTAGATTGGGATCGAACATCTACCTTTGTAATATCAGAAGCAAAACACTGGCTGTGATTCCTTACCACTGTGATGGTGTTTCTATCCCATGGGATTCTTGTAAAGTGGTGCCTTTCTTTCAGAAGATATGGCCTTATTCCCCTTTCCCTGACCCCTCGAACACTTTTAATAATTGATATCAACCATGAGATGCCTGTTGTTCTGTTGC ATGGGCTATAATGGACGCTTCTCCAGATTTAGAGGGAGGAAAATGGTTAGTGATAGTATTCATTCAGCTTTGGCATGTGATGACATCCTCACCGAAATCCTCCTTCGTTTACCGGAGAAACATGTTTTCAAATTTATACTCGTGTCGAAAAAATGGCTATACCTGATCTGTGATTTACCTTTCCGACGTTGTTACGAGATGCAATGGGGCACACACACTCGTCTTTTTGGCTTTTTTGTATGCAATCTTCTTTACATTGACAGACCACAAGGCGGGTTGAGGCGCCCTCGGTACGAGCCTGCTCTACCTCTACTTTCAACATGTAAAGAAGGTGATGATTTAATGTCATCTGGATTCTTAAGGAAGCTAGGCTATTTTATTGACTACTCTGATGGCCTTGTGCTCTGTGGCCGACATCCTAAGAATTATTATGTCTGGAATTCTGTATCGAAGTATCGATGCCTTCTTCCTCAACCTCGAAAGCATTATAAATGTCTATGTATCGCGTTCATCACTGAAAACCGTGGTGAAGCTGACGGAGATATGGTATATAGAATCGTTCGGGCGAGCTGTGAATGCAAAGTTGATGTTATTAACACCATCTCTATAGAGACTTTCTCCTCAATGACTTGGACATGGAAGCAATCAACTCTTGTTTGTTCTTCATATTTTTCTTTGAGTCCATGGATGGTGGGAACCGTGATCGACCGAGTTATATACTGGTTCGGAACGTATCGAAGCTTAGCCATTTATGATCCGGGATTCGGAGAAAGGAGCATAAACTCGATCAAGCTACCGGTTGGTCAGCTGACTTATGACTATGAGGACTCCATTTTAGGAGAGTCATCTGATGGGCTTTTGCAGTATGGTCAAAGTGGAAAGATGGGGTTGGAGATATGGATTCTGCACAAGGAGCAAGCTACCGTTACCGATCGATACGAGTACCGGTGGACGTTACGACACAGACTGAGCTGCAAAGAGATGTCGAAACAGAACCCGAATTCAGGTATTCGTACTAAAGAACCTCAAGTATTATCGTTCATTTGTCGAGACTCGGAATCTGTTTTCATTAGATTGGGATCGAACATCTACCTTTGTAATATCAGAAGCAAAACACTGGCTGTGATTCCTTACCACTGTGATGGTGTTTCTATCCCATGGGATTCTTGTAAAGTGGTGCCTTTCTTTCAGAAGATATGGCCTTATTCCCCTTTCCCTGACCCCTCGAACACTTTTAATAATTGA MGYNGRFSRFRGRKMVSDSIHSALACDDILTEILLRLPEKHVFKFILVSKKWLYLICDLPFRRCYEMQWGTHTRLFGFFVCNLLYIDRPQGGLRRPRYEPALPLLSTCKEGDDLMSSGFLRKLGYFIDYSDGLVLCGRHPKNYYVWNSVSKYRCLLPQPRKHYKCLCIAFITENRGEADGDMVYRIVRASCECKVDVINTISIETFSSMTWTWKQSTLVCSSYFSLSPWMVGTVIDRVIYWFGTYRSLAIYDPGFGERSINSIKLPVGQLTYDYEDSILGESSDGLLQYGQSGKMGLEIWILHKEQATVTDRYEYRWTLRHRLSCKEMSKQNPNSGIRTKEPQVLSFICRDSESVFIRLGSNIYLCNIRSKTLAVIPYHCDGVSIPWDSCKVVPFFQKIWPYSPFPDPSNTFNN
BLAST of Cp4.1LG07g09720.1 vs. Swiss-Prot
Match: FB251_ARATH (F-box protein At5g03970 OS=Arabidopsis thaliana GN=At5g03970 PE=2 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 8.0e-86 Identity = 165/390 (42.31%), Postives = 233/390 (59.74%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. Swiss-Prot
Match: FB44_ARATH (Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 9.7e-07 Identity = 85/364 (23.35%), Postives = 143/364 (39.29%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. TrEMBL
Match: A0A0A0LJ78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010130 PE=4 SV=1) HSP 1 Score: 650.6 bits (1677), Expect = 1.3e-183 Identity = 309/413 (74.82%), Postives = 346/413 (83.78%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. TrEMBL
Match: K7N055_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 435.3 bits (1118), Expect = 8.5e-119 Identity = 210/397 (52.90%), Postives = 279/397 (70.28%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. TrEMBL
Match: A0A0R0ESK5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G246800 PE=4 SV=1) HSP 1 Score: 435.3 bits (1118), Expect = 8.5e-119 Identity = 210/397 (52.90%), Postives = 279/397 (70.28%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. TrEMBL
Match: A0A0B2SFS9_GLYSO (F-box protein OS=Glycine soja GN=glysoja_001755 PE=4 SV=1) HSP 1 Score: 434.1 bits (1115), Expect = 1.9e-118 Identity = 208/388 (53.61%), Postives = 273/388 (70.36%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. TrEMBL
Match: A0A072U603_MEDTR (F-box associated ubiquitination effector-like protein OS=Medicago truncatula GN=MTR_7g115440 PE=4 SV=1) HSP 1 Score: 431.0 bits (1107), Expect = 1.6e-117 Identity = 208/394 (52.79%), Postives = 271/394 (68.78%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. TAIR10
Match: AT5G03970.1 (AT5G03970.1 F-box associated ubiquitination effector family protein) HSP 1 Score: 318.9 bits (816), Expect = 4.5e-87 Identity = 165/390 (42.31%), Postives = 233/390 (59.74%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. TAIR10
Match: AT1G47790.1 (AT1G47790.1 F-box and associated interaction domains-containing protein) HSP 1 Score: 56.2 bits (134), Expect = 5.5e-08 Identity = 85/364 (23.35%), Postives = 143/364 (39.29%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. NCBI nr
Match: gi|778666410|ref|XP_004139251.2| (PREDICTED: F-box protein At5g03970 isoform X1 [Cucumis sativus]) HSP 1 Score: 650.6 bits (1677), Expect = 1.9e-183 Identity = 309/413 (74.82%), Postives = 346/413 (83.78%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. NCBI nr
Match: gi|700205658|gb|KGN60777.1| (hypothetical protein Csa_2G010130 [Cucumis sativus]) HSP 1 Score: 650.6 bits (1677), Expect = 1.9e-183 Identity = 309/413 (74.82%), Postives = 346/413 (83.78%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. NCBI nr
Match: gi|659070719|ref|XP_008456330.1| (PREDICTED: F-box protein At5g03970 [Cucumis melo]) HSP 1 Score: 648.7 bits (1672), Expect = 7.1e-183 Identity = 308/408 (75.49%), Postives = 344/408 (84.31%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. NCBI nr
Match: gi|778666414|ref|XP_011648736.1| (PREDICTED: F-box protein At5g03970 isoform X2 [Cucumis sativus]) HSP 1 Score: 643.7 bits (1659), Expect = 2.3e-181 Identity = 306/405 (75.56%), Postives = 341/405 (84.20%), Query Frame = 1
BLAST of Cp4.1LG07g09720.1 vs. NCBI nr
Match: gi|1009117476|ref|XP_015875340.1| (PREDICTED: F-box protein At5g03970 [Ziziphus jujuba]) HSP 1 Score: 456.1 bits (1172), Expect = 6.7e-125 Identity = 217/401 (54.11%), Postives = 284/401 (70.82%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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